MD04G1091600.v1.1

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012852
Physical Location & Seq
Forward (+)
16340502 .. 16347315
6814 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1091600.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGAAACTAATGGTAGCAATTCTAATTCTCAAGAAAATCAACCTTTAGATGCTTCAAATATTGCTAGTAGAGGGAAGCTTAATGAGAAAGAAGTCTTTGTTAATAATGCTGAGATAGCTTGGCATGAGAAAAGAAGAGAATGGATTGGCAATCAGTCTCAGAAATCGCGAAGAGCACCAAAAGAACCAATTATGAGCTGGACAACAACGTATGAGGATCTTCTTTTATCTACTGAACCTTTTCAGGAGCCAATACCTTTAGCTGAAATGGTGGATTTTTTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

96

Amino Acids

10.94

Weight (kDa)

4.82

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03440 AT5G03440 AT5G03440
fragaria_vesca FvH4_6g16540
malus_domestica MD04G1091600.v1.1 MD12G1109500.v1.1
prunus_persica Prupe.7G128200_v2.0.a1
pyrus_communis pycom04g08630
rosa_chinensis RchiOBHm_Chr3g0470451
rosa_laevigata RLG00000024266
rosa_multiflora Rmu_sc0003381.1_g000005
rosa_roxburghii Rroxscaffold_6G00410790
rosa_rugosa Rorug03G0109200
rosa_samantha Rh3AG159600 Rh3BG184100 Rh3CG174600 Rh3DG190800
rosa_wichuraiana Rw3G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AclWI GGATC 1 cut(s) 225
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 4 cut(s) 79, 119, 198, 263
AluI AGCT 4 cut(s) 79, 119, 198, 263
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 102, 173
Bsh1236I CGCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 217
Bsp68I TCGCGA 1 cut(s) 169
BspCNI CTCAG 2 cut(s) 103, 172
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 166
BssMI GATC 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 130, 166
BstDEI CTNAG 2 cut(s) 111, 159
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstUI CGCG 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BtuMI TCGCGA 1 cut(s) 169
CviAII CATG 1 cut(s) 125
CviJI RGCY 5 cut(s) 79, 119, 198, 250, 263
CviKI_1 RGCY 5 cut(s) 79, 119, 198, 250, 263
DdeI CTNAG 2 cut(s) 111, 159
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 130, 166
EarI CTCTTC 2 cut(s) 130, 166
FaeI CATG 1 cut(s) 128
FaiI YATR 3 cut(s) 126, 194, 213
FatI CATG 1 cut(s) 124
FspBI CTAG 1 cut(s) 66
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 3 cut(s) 32, 168, 245
HpyCH4IV ACGT 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 111, 159
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 2 cut(s) 184, 230
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 209
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 147, 183, 212
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 3 cut(s) 19, 25, 189
MnlI CCTC 2 cut(s) 65, 208
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 2 cut(s) 81, 102
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 249
NruI TCGCGA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 217
RruI TCGCGA 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 81, 102
Sau3AI GATC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 178
SetI ASST 8 cut(s) 46, 81, 121, 200, 212, 241, 259, 265
SfaNI GCATC 1 cut(s) 40
SgeI CNNG 7 cut(s) 44, 78, 132, 137, 180, 211, 257
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 3 cut(s) 19, 25, 189
SspI AATATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 66
TaiI ACGT 1 cut(s) 212
TasI AATT 3 cut(s) 19, 25, 189
Tru1I TTAA 2 cut(s) 81, 102
Tru9I TTAA 2 cut(s) 81, 102
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.