Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011417

Physical Location & Seq

Genomic Coordinates Reverse (-)

1474027 .. 1476434

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCAGCTTTGCAAACGCTTCGTGAATGGATCGGTATCCAGCAGTTCCCACCTGCTACTCAATCTAAATTGCTCGAGATCCTTGGGAAGTATAAAGAAGAGGATGTGAGCTCGCTAACGGTCCTTGTAATGGGGAAAGGTGGTGTTGGAAAGTCATCAACTGTGAATTCAGTTATAGGCGAGAAAGCTGCTGCAGTTAGTACTTTCCAGTCTGAAGGACTGAGGCCTACCTTGGTCTCTCGCACAAGATCGGGATTTACATTGAATATCATCGACACTCCTGGTCTTATTGAGGGAGGATATGTGAATGATCAAGCCATCAACATTATAAAACGATTTCTCCTCAACATGACTATAGATGTGCTACTATACGTAGACCGTTTGGATGTGTACCGGGTGGATGACCTTGATAGGCAAGTTGTCGGTGCTATAACTGATGCATTTGGTAAAGAGATATGGAAGAAGTCTGCTCTTGTTCTCACCCATGCTCAGTTCTCTCCACCAGACGGGTTAAATTATAACCACTTTGTCTCCAAAAGATCTAATGCTCTTCTAAAAGTTATCCAGACAGGCGCTCAACTGAAGAAACAGGATTTGCAGGGTTTTTCTATTCCTGTCATTCTTGTTGAGAACAGCGGAAGATGCCATAAGAACGAAAGCGATGAAAAGATTCTTCCATGCGGGACTAGTTGGATTCCCAATCTGTTCAACAAAATCACAGAGATCTCTTTTAATGGCAACAAGGCGATTCATGTTGACAAGAAACTGGTCGAAGGGCCAAACCCAAACGAAAGAGGAAAAAAACTGATTCCTTTAATGTTTGCATTCCAATACTTGCTGGTGATGAAGCCATTGGTTCGAGCAATCAAGTCCGATGTTTCGAGAGAGAGTAAACCGGCGTGGGAGCTGCGAGACTCCGGTTTAGCAAGTCGAAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1

Protein Analysis

313

Amino Acids

34.71

Weight (kDa)

9.42

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsgA_GTPase	PF03193	35 - 98	6.9e-06	RsgA GTPase
AIG1	PF04548	39 - 227	2e-34	AIG1 family
MMR_HSR1	PF01926	41 - 144	1.6e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05000 AT5G05000 AT5G05000
fragaria_vesca	FvH4_6g30520 FvH4_6g30520
malus_domestica	MD09G1219200.v1.1 MD17G1202600.v1.1
prunus_persica	Prupe.3G078000_v2.0.a1 Prupe.3G078000_v2.0.a1
pyrus_communis	pycom09g13720
rosa_chinensis	RchiOBHm_Chr2g0136921
rosa_laevigata	RLG00000019589
rosa_multiflora	Rmu_ssc0000071.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107870
rosa_rugosa	Rorug02G0335300 Rorug02G0335400
rosa_samantha	Rh2AG385300 Rh2BG392400 Rh2CG372600
rosa_wichuraiana	Rw2G031520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	329, 519
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	375
AciI	CCGC	2 cut(s)	636, 681
AclWI	GGATC	2 cut(s)	38, 73
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	2 cut(s)	234, 602
AfaI	GTAC	2 cut(s)	202, 392
AfiI	CCNNNNNNNGG	2 cut(s)	130, 506
AgsI	TTSAA	2 cut(s)	265, 709
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	4 cut(s)	8, 111, 188, 907
AluI	AGCT	4 cut(s)	8, 111, 188, 907
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	3 cut(s)	241, 535, 906
AlwI	GGATC	2 cut(s)	38, 73
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	224, 776
ApeKI	GCWGC	4 cut(s)	5, 188, 191, 907
ApoI	RAATTY	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	121, 776
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	472, 853
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	4 cut(s)	17, 175, 178, 894
BccI	CCATC	1 cut(s)	326
BcgI	CGANNNNNNTGC	3 cut(s)	36, 170, 204
BciT130I	CCWGG	1 cut(s)	282
BciVI	GTATCC	1 cut(s)	47
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	241, 535, 906
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	2 cut(s)	192, 354
BfoI	RGCGCY	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	47
BglII	AGATCT	2 cut(s)	539, 723
BisI	GCNGC	4 cut(s)	6, 189, 192, 908
BlsI	GCNGC	4 cut(s)	7, 190, 193, 909
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	282, 395
Bme18I	GGWCC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	121, 776
BmrFI	CCNGG	2 cut(s)	282, 395
BmsI	GCATC	2 cut(s)	427, 632
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	82, 231
BsaWI	WCCGGW	1 cut(s)	917
BsaXI	ACNNNNNCTCC	6 cut(s)	288, 318, 324, 354, 515, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 506
Bse118I	RCCGGY	1 cut(s)	895
Bse1I	ACTGG	2 cut(s)	208, 771
Bse8I	GATNNNNATC	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	82, 231
BseGI	GGATG	3 cut(s)	109, 391, 406
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	130, 506
BseMII	CTCAG	2 cut(s)	212, 503
BseNI	ACTGG	2 cut(s)	208, 771
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	17, 175, 178, 894
BshFI	GGCC	2 cut(s)	226, 778
BsiHKAI	GWGCWC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	394, 896, 918
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	2 cut(s)	130, 506
BsmAI	GTCTC	3 cut(s)	241, 535, 906
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	226, 778
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	6 cut(s)	30, 78, 248, 310, 539, 723
BspACI	CCGC	2 cut(s)	636, 681
BspANI	GGCC	2 cut(s)	226, 778
BspCNI	CTCAG	2 cut(s)	213, 502
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	38, 73
BspQI	GCTCTTC	1 cut(s)	555
BspTNI	GGTCTC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	895
BsrI	ACTGG	2 cut(s)	208, 771
BssAI	RCCGGY	1 cut(s)	895
BssECI	CCNNGG	2 cut(s)	82, 231
BssMI	GATC	6 cut(s)	30, 78, 248, 310, 539, 723
BssT1I	CCWWGG	2 cut(s)	82, 231
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	3 cut(s)	121, 163, 380
Bst6I	CTCTTC	2 cut(s)	93, 555
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	221, 489
BstF5I	GGATG	3 cut(s)	109, 391, 406
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	6 cut(s)	33, 81, 251, 313, 542, 726
BstMAI	GTCTC	3 cut(s)	241, 535, 906
BstMBI	GATC	6 cut(s)	30, 78, 248, 310, 539, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	642
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	280, 393
BstSFI	CTRYAG	2 cut(s)	192, 354
BstSNI	TACGTA	1 cut(s)	373
BstV1I	GCAGC	4 cut(s)	17, 175, 178, 894
BstX2I	RGATCY	3 cut(s)	78, 539, 723
BstYI	RGATCY	3 cut(s)	78, 539, 723
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	226, 778
BtgZI	GCGATG	1 cut(s)	675
BtsCI	GGATG	3 cut(s)	109, 391, 406
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	575
Cfr10I	RCCGGY	1 cut(s)	895
Cfr13I	GGNCC	2 cut(s)	121, 776
Csp6I	GTAC	2 cut(s)	201, 391
CviAII	CATG	4 cut(s)	349, 485, 678, 752
CviJI	RGCY	8 cut(s)	8, 111, 188, 226, 317, 778, 850, 907
CviKI_1	RGCY	8 cut(s)	8, 111, 188, 226, 317, 778, 850, 907
CviQI	GTAC	2 cut(s)	201, 391
DdeI	CTNAG	2 cut(s)	221, 489
DpnI	GATC	6 cut(s)	32, 80, 250, 312, 541, 725
DpnII	GATC	6 cut(s)	30, 78, 248, 310, 539, 723
Eam1104I	CTCTTC	2 cut(s)	93, 555
EarI	CTCTTC	2 cut(s)	93, 555
Ecl136II	GAGCTC	1 cut(s)	111
Eco105I	TACGTA	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	82, 231
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	234, 602
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	82, 231
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	2 cut(s)	82, 231
FaeI	CATG	4 cut(s)	352, 488, 681, 755
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	4 cut(s)	348, 484, 677, 751
FauI	CCCGC	1 cut(s)	674
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	6, 189, 192, 908
FokI	GGATG	3 cut(s)	116, 398, 413
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	4 cut(s)	6, 189, 192, 908
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	4 cut(s)	6, 189, 192, 908
HaeII	RGCGCY	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	226, 778
HapII	CCGG	3 cut(s)	394, 896, 918
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	4 cut(s)	352, 488, 681, 755
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	5 cut(s)	670, 694, 748, 808, 914
HpaII	CCGG	3 cut(s)	394, 896, 918
HphI	GGTGA	2 cut(s)	472, 853
Hpy166II	GTNNAC	4 cut(s)	376, 391, 757, 893
Hpy188I	TCNGA	2 cut(s)	214, 874
Hpy188III	TCNNGA	6 cut(s)	23, 76, 252, 565, 882, 939
Hpy8I	GTNNAC	4 cut(s)	376, 391, 757, 893
HpyAV	CCTTC	3 cut(s)	209, 767, 927
HpyCH4III	ACNGT	3 cut(s)	121, 163, 380
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	13, 194, 440, 598, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	642
HpyF3I	CTNAG	2 cut(s)	221, 489
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	352, 488, 681, 755
HspAI	GCGC	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	6 cut(s)	30, 78, 248, 310, 539, 723
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	1 cut(s)	904
Lsp1109I	GCAGC	4 cut(s)	17, 175, 178, 894
LweI	GCATC	2 cut(s)	427, 632
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	1 cut(s)	372
MalI	GATC	6 cut(s)	32, 80, 250, 312, 541, 725
MboI	GATC	6 cut(s)	30, 78, 248, 310, 539, 723
MboII	GAAGA	6 cut(s)	110, 472, 542, 595, 651, 665
MflI	RGATCY	3 cut(s)	78, 539, 723
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	3 cut(s)	68, 166, 514
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	2 cut(s)	127, 671
MnlI	CCTC	6 cut(s)	94, 216, 286, 290, 353, 788
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	3 cut(s)	512, 732, 815
MspA1I	CMGCKG	1 cut(s)	636
MspI	CCGG	3 cut(s)	394, 896, 918
MspR9I	CCNGG	2 cut(s)	282, 395
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	642
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	6 cut(s)	30, 78, 248, 310, 539, 723
NlaIII	CATG	4 cut(s)	352, 488, 681, 755
NsiI	ATGCAT	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	74
PaqCI	CACCTGC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	555
PctI	GAATGC	1 cut(s)	824
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	4 cut(s)	670, 694, 748, 808
PkrI	GCNGC	4 cut(s)	7, 190, 193, 909
PleI	GAGTC	1 cut(s)	908
PpsI	GAGTC	1 cut(s)	908
Ppu21I	YACGTR	1 cut(s)	373
PsiI	TTATAA	2 cut(s)	329, 519
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	121, 776
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	3 cut(s)	78, 539, 723
RsaI	GTAC	2 cut(s)	202, 392
RsaNI	GTAC	2 cut(s)	201, 391
SacI	GAGCTC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	512, 732, 815
SatI	GCNGC	4 cut(s)	6, 189, 192, 908
Sau3AI	GATC	6 cut(s)	30, 78, 248, 310, 539, 723
Sau96I	GGNCC	2 cut(s)	121, 776
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	2 cut(s)	282, 395
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	2 cut(s)	427, 632
SfcI	CTRYAG	2 cut(s)	192, 354
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	121
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SnaBI	TACGTA	1 cut(s)	373
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	3 cut(s)	68, 166, 514
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	636, 681
SspMI	CTAG	1 cut(s)	687
SstI	GAGCTC	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	280, 393
StyI	CCWWGG	2 cut(s)	82, 231
TaaI	ACNGT	3 cut(s)	121, 163, 380
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	6 cut(s)	75, 273, 771, 859, 881, 931
TasI	AATT	3 cut(s)	68, 166, 514
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	4 cut(s)	670, 694, 748, 808
Tru1I	TTAA	3 cut(s)	512, 732, 815
Tru9I	TTAA	3 cut(s)	512, 732, 815
TseI	GCWGC	4 cut(s)	5, 188, 191, 907
TspDTI	ATGAA	3 cut(s)	678, 740, 860
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	1 cut(s)	687
ZrmI	AGTACT	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.