Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011417

Physical Location & Seq

Genomic Coordinates Reverse (-)

50554119 .. 50556988

Gene Structure 2870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCATCCCAAATAATTAGAGAATGGCTTGGGATAAACAGTTTCGCACCTGCCACACAGACTAAGTTGCTCGAATTGCTCGGAAAACTCAACCAAGAGAATGTGAACAGTTTGACAATTCTTGTTATGGGGAAAGGTGGGGTTGGGAAATCATCCACTGTGAACTCACTCATTGGTGAAAGGGCTGTTTCTATTAGTCCTTTTCAGTCTGAAGGAACCAGAGCTGTGATGGTTTCCCGCTCAAGGGCAGGATTTACCCTAAACATCATTGACACCCCTGGGCTCATAGAAGGAGGATATATTAATGACATGGCACTTAATAATATAAAAAGTTTCCTTCTGAACAAGACCATAGACGTTCTACTCTATGTGGATCGATTGGATGCATATAGAGTGGACAACTTGGATAGGGAGGTGGTCAAAGCCATTACTGATACTTTTGGAAAAGGGATATGGAATAGAGCCTTGGTTGTCCTGACACACGCACAGCTCTCACCACCAGATGGCTTGCCTTACGATGAGTTTGTCTCCAAAAGATCAGAATCTCTTTTAAAAGCTGTTCGTCTTGGTGCTGGGTTAAGAAAACAGGAAGTGCAGGGCTCTACTATTCCTGTTGTTTTGGTTGAGAACAGTGGGAGATGCAACAAGAATGAAAAGGATGAAAAGGTTCTTCCAAATGGAACTGCTTGGATACCCCATGTTGTCCAAACAATCACAGAAGTCATCTTGGGTGGAAGCAAGTCAATTTTTGTTGACCAGAAGTTGATTGAGGGGCCAAACCCCAATGCTAGAGGGAAAATCTTAATTCCTGTAATTTTGGCGCTCCAGTACTTCTTTGTGATTAAACCGATAGAACGTCGGATCAGGACTGACATTGCAAGAGAGAGCAGACCATCCTGGGAGATGCGGGATACCGCTAGTCGCAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042170 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1

Protein Analysis

310

Amino Acids

34.28

Weight (kDa)

9.52

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsgA_GTPase	PF03193	33 - 97	1.5e-06	RsgA GTPase
AIG1	PF04548	38 - 188	1.6e-32	AIG1 family
MMR_HSR1	PF01926	40 - 144	1.7e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05000 AT5G05000 AT5G05000
fragaria_vesca	FvH4_6g30520 FvH4_6g30520
malus_domestica	MD09G1219200.v1.1 MD17G1202600.v1.1
prunus_persica	Prupe.3G078000_v2.0.a1 Prupe.3G078000_v2.0.a1
pyrus_communis	pycom09g13720
rosa_chinensis	RchiOBHm_Chr2g0136921
rosa_laevigata	RLG00000019589
rosa_multiflora	Rmu_ssc0000071.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107870
rosa_rugosa	Rorug02G0335300 Rorug02G0335400
rosa_samantha	Rh2AG385300 Rh2BG392400 Rh2CG372600
rosa_wichuraiana	Rw2G031520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	240
AciI	CCGC	3 cut(s)	238, 907, 915
AclWI	GGATC	2 cut(s)	381, 869
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	830, 929
AfiI	CCNNNNNNNGG	3 cut(s)	243, 244, 503
AjnI	CCWGG	2 cut(s)	277, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	3 cut(s)	224, 490, 557
AluI	AGCT	3 cut(s)	224, 490, 557
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	381, 869
AoxI	GGCC	1 cut(s)	773
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	773
AsuHPI	GGTGA	2 cut(s)	188, 486
BanII	GRGCYC	2 cut(s)	285, 602
BccI	CCATC	3 cut(s)	223, 497, 901
BciT130I	CCWGG	2 cut(s)	279, 898
BciVI	GTATCC	2 cut(s)	684, 904
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	2 cut(s)	789, 918
BfoI	RGCGCY	1 cut(s)	824
BfuAI	ACCTGC	1 cut(s)	58
BfuI	GTATCC	2 cut(s)	684, 904
BmcAI	AGTACT	2 cut(s)	830, 929
Bme1390I	CCNGG	2 cut(s)	279, 898
BmgT120I	GGNCC	1 cut(s)	773
BmiI	GGNNCC	2 cut(s)	217, 774
BmrFI	CCNGG	2 cut(s)	279, 898
BmsI	GCATC	4 cut(s)	14, 373, 629, 894
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	1 cut(s)	809
BpuEI	CTTGAG	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	541
BsaJI	CCNNGG	4 cut(s)	277, 278, 465, 897
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 244, 503
Bse1I	ACTGG	1 cut(s)	826
Bse3DI	GCAATG	1 cut(s)	873
Bse8I	GATNNNNATC	1 cut(s)	541
BseBI	CCWGG	2 cut(s)	279, 898
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	4 cut(s)	277, 278, 465, 897
BseGI	GGATG	5 cut(s)	5, 152, 388, 664, 893
BseJI	GATNNNNATC	1 cut(s)	541
BseLI	CCNNNNNNNGG	3 cut(s)	243, 244, 503
BseMI	GCAATG	1 cut(s)	873
BseNI	ACTGG	1 cut(s)	826
BseYI	CCCAGC	1 cut(s)	572
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	1 cut(s)	775
BshVI	ATCGAT	1 cut(s)	376
BslI	CCNNNNNNNGG	3 cut(s)	243, 244, 503
BsmAI	GTCTC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	775
Bsp1286I	GDGCHC	2 cut(s)	285, 602
Bsp143I	GATC	3 cut(s)	373, 536, 861
BspACI	CCGC	3 cut(s)	238, 907, 915
BspANI	GGCC	1 cut(s)	775
BspDI	ATCGAT	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	217, 774
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	381, 869
BsrBI	CCGCTC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	873
BsrI	ACTGG	1 cut(s)	826
BssECI	CCNNGG	4 cut(s)	277, 278, 465, 897
BssMI	GATC	3 cut(s)	373, 536, 861
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	279, 898
Bst4CI	ACNGT	4 cut(s)	41, 110, 160, 632
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	5 cut(s)	5, 152, 388, 664, 893
BstH2I	RGCGCY	1 cut(s)	824
BstHHI	GCGC	1 cut(s)	823
BstKTI	GATC	3 cut(s)	376, 539, 864
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	3 cut(s)	373, 536, 861
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	279, 898
BstSCI	CCNGG	2 cut(s)	277, 896
Bsu15I	ATCGAT	1 cut(s)	376
BsuI	GTATCC	2 cut(s)	684, 904
BsuRI	GGCC	1 cut(s)	775
BsuTUI	ATCGAT	1 cut(s)	376
BtsCI	GGATG	5 cut(s)	5, 152, 388, 664, 893
BtsIMutI	CAGTG	2 cut(s)	156, 637
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	509
CfoI	GCGC	1 cut(s)	823
Cfr13I	GGNCC	1 cut(s)	773
ClaI	ATCGAT	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	829, 928
CviAII	CATG	2 cut(s)	310, 698
CviQI	GTAC	2 cut(s)	829, 928
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	3 cut(s)	375, 538, 863
DpnII	GATC	3 cut(s)	373, 536, 861
DraI	TTTAAA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	2 cut(s)	285, 602
Eco57I	CTGAAG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	277, 896
EcoT14I	CCWWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	2 cut(s)	285, 602
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	2 cut(s)	313, 701
FatI	CATG	2 cut(s)	309, 697
FauI	CCCGC	2 cut(s)	245, 900
FokI	GGATG	4 cut(s)	139, 395, 671, 880
FriOI	GRGCYC	2 cut(s)	285, 602
FspBI	CTAG	2 cut(s)	789, 918
GlaI	GCGC	1 cut(s)	822
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	809
HaeII	RGCGCY	1 cut(s)	824
HaeIII	GGCC	1 cut(s)	775
HhaI	GCGC	1 cut(s)	823
Hin1II	CATG	2 cut(s)	313, 701
Hin6I	GCGC	1 cut(s)	821
HinP1I	GCGC	1 cut(s)	821
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	1 cut(s)	542
HphI	GGTGA	2 cut(s)	188, 486
Hpy166II	GTNNAC	4 cut(s)	106, 163, 397, 754
Hpy188I	TCNGA	5 cut(s)	83, 211, 342, 541, 861
Hpy188III	TCNNGA	2 cut(s)	475, 865
Hpy8I	GTNNAC	4 cut(s)	106, 163, 397, 754
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	3 cut(s)	206, 284, 347
HpyCH4III	ACNGT	4 cut(s)	41, 110, 160, 632
HpyCH4IV	ACGT	2 cut(s)	357, 856
HpyCH4V	TGCA	4 cut(s)	386, 595, 642, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	2 cut(s)	357, 856
Hsp92II	CATG	2 cut(s)	313, 701
HspAI	GCGC	1 cut(s)	821
Kzo9I	GATC	3 cut(s)	373, 536, 861
LmnI	GCTCC	1 cut(s)	828
LweI	GCATC	4 cut(s)	14, 373, 629, 894
MaeI	CTAG	2 cut(s)	789, 918
MaeII	ACGT	2 cut(s)	357, 856
MalI	GATC	3 cut(s)	375, 538, 863
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	3 cut(s)	373, 536, 861
MboII	GAAGA	1 cut(s)	662
MhlI	GDGCHC	2 cut(s)	285, 602
MluCI	AATT	6 cut(s)	15, 74, 117, 744, 804, 813
MmeI	TCCRAC	1 cut(s)	839
MnlI	CCTC	4 cut(s)	287, 406, 763, 785
Mph1103I	ATGCAT	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	6 cut(s)	303, 318, 551, 578, 803, 843
MspR9I	CCNGG	2 cut(s)	279, 898
MvaI	CCWGG	2 cut(s)	279, 898
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	3 cut(s)	373, 536, 861
NlaIII	CATG	2 cut(s)	313, 701
NlaIV	GGNNCC	2 cut(s)	217, 774
NsiI	ATGCAT	1 cut(s)	388
PaqCI	CACCTGC	1 cut(s)	58
PasI	CCCWGGG	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	1 cut(s)	542
PflMI	CCANNNNNTGG	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	277, 896
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	2 cut(s)	277, 896
PspN4I	GGNNCC	2 cut(s)	217, 774
PspPI	GGNCC	1 cut(s)	773
RsaI	GTAC	2 cut(s)	830, 929
RsaNI	GTAC	2 cut(s)	829, 928
SaqAI	TTAA	6 cut(s)	303, 318, 551, 578, 803, 843
Sau3AI	GATC	3 cut(s)	373, 536, 861
Sau96I	GGNCC	1 cut(s)	773
ScaI	AGTACT	2 cut(s)	830, 929
ScrFI	CCNGG	2 cut(s)	279, 898
SduI	GDGCHC	2 cut(s)	285, 602
SetI	ASST	9 cut(s)	52, 139, 226, 360, 417, 492, 559, 669, 859
SfaNI	GCATC	4 cut(s)	14, 373, 629, 894
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	6 cut(s)	15, 74, 117, 744, 804, 813
SsiI	CCGC	3 cut(s)	238, 907, 915
SspMI	CTAG	2 cut(s)	789, 918
StyD4I	CCNGG	2 cut(s)	277, 896
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	41, 110, 160, 632
TaiI	ACGT	2 cut(s)	360, 859
TaqI	TCGA	2 cut(s)	72, 376
TasI	AATT	6 cut(s)	15, 74, 117, 744, 804, 813
TatI	WGTACW	2 cut(s)	828, 927
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	6 cut(s)	303, 318, 551, 578, 803, 843
Tru9I	TTAA	6 cut(s)	303, 318, 551, 578, 803, 843
TscAI	CASTG	2 cut(s)	163, 637
TspDTI	ATGAA	2 cut(s)	666, 675
TspRI	CASTG	2 cut(s)	163, 637
Van91I	CCANNNNNTGG	1 cut(s)	503
VspI	ATTAAT	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	2 cut(s)	789, 918
ZrmI	AGTACT	2 cut(s)	830, 929
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.