Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011417

Physical Location & Seq

Genomic Coordinates Forward (+)

12715815 .. 12719611

Gene Structure 3797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13720.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCATCCCAGATGATTAGAGAATGGGCTGGAATAAATAGCTTCGCACCCGCCACTCAGACTAAGTTGCTTGAATTGCTGGGAAAACTCAAGCAAGAGAATGTGAACAGTTTGACTGTTCTAGTGATGGGGAAAGGCGGGGTTGGAAAATCATCCACTGTCAATTCGCTCCTCGGTGAAAGGGCTGTTCCCATCAGTCCTTTTCAGTCTGAAGGAACGAGACCTTTGATGTTTTCACGTTCAAGGGCAGGGTTTACATTAAACATCATTGACACCCCTGGGCTCATAGAAGGAGGATATGTTAGTGACATGGCTCTTAATAATATTAAAAGTTTCCTTTTGAATAAGACCGTAGACGTTCTACTCTATGTGGATCGATTGGATGCTTATAGGGTGGACAACCTGGATAAGGAGGTTGTCAAAGCCATAACAGATAGTTTCGGTAAGGGAATATGGAATAGGGCTTTGGTTGTTCTAACACATGCTCAGCTCTCACCACCAGATGGTTATGCTTATGATGACTTTGTCTCCAAAAGATCTGAGGCTCTTCTAAAAATTGTCCGTCTTGGTGCTGGATTGAAAAAACAGGATGCACAGGCTTCGACTATTCCTGTTGTTTTGGTTGAGAACAGTGGGAGATGTAACAAGAATGAAAATGACGAAAAGGTTCTTCCAAATGGAACTGCTTGGATATCTCATTTAGTCCAAACAATGACGGAAGTTATCTTGAACGGAAGCAAGTCTATTCATGTCGACAAGAAATTGATCGAGGGACCGAACCCCAATGATAAGGGGAAGTTGTTAATCCCTCTCTTTTTAGCGATCCAGTATTTCTGTGTCATTAAGCCGATAGAACGAGCAATCAAGAGTGATATTGCGAAAGAGAGTAGACCATCATGGGAGATGCGGGATTCTGGTGCGGCCGGTCGCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042170 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1

Protein Analysis

313

Amino Acids

34.23

Weight (kDa)

9.25

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05000 AT5G05000 AT5G05000
fragaria_vesca	FvH4_6g30520 FvH4_6g30520
malus_domestica	MD09G1219200.v1.1 MD17G1202600.v1.1
prunus_persica	Prupe.3G078000_v2.0.a1 Prupe.3G078000_v2.0.a1
pyrus_communis	pycom09g13720
rosa_chinensis	RchiOBHm_Chr2g0136921
rosa_laevigata	RLG00000019589
rosa_multiflora	Rmu_ssc0000071.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107870
rosa_rugosa	Rorug02G0335300 Rorug02G0335400
rosa_samantha	Rh2AG385300 Rh2BG392400 Rh2CG372600
rosa_wichuraiana	Rw2G031520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccI	GTMKAC	3 cut(s)	354, 753, 889
AciI	CCGC	4 cut(s)	51, 138, 907, 920
AclWI	GGATC	2 cut(s)	381, 817
AcoI	YGGCCR	1 cut(s)	921
AcsI	RAATTY	1 cut(s)	932
AcuI	CTGAAG	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	409, 503
AgsI	TTSAA	5 cut(s)	74, 243, 343, 580, 730
AjnI	CCWGG	2 cut(s)	277, 402
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	2 cut(s)	42, 490
AluI	AGCT	2 cut(s)	42, 490
Alw26I	GTCTC	2 cut(s)	214, 532
AlwI	GGATC	2 cut(s)	381, 817
AoxI	GGCC	1 cut(s)	921
ApoI	RAATTY	1 cut(s)	932
Asp700I	GAANNNNTTC	1 cut(s)	666
AspS9I	GGNCC	1 cut(s)	773
AsuHPI	GGTGA	2 cut(s)	188, 486
AvaII	GGWCC	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	285
BccI	CCATC	4 cut(s)	121, 200, 497, 901
BcgI	CGANNNNNNTGC	2 cut(s)	582, 616
BciT130I	CCWGG	2 cut(s)	279, 404
BcoDI	GTCTC	2 cut(s)	214, 532
BfaI	CTAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	536
BisI	GCNGC	1 cut(s)	921
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	922
Bme1390I	CCNGG	2 cut(s)	279, 404
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	773
BmiI	GGNNCC	1 cut(s)	774
BmrFI	CCNGG	2 cut(s)	279, 404
BmsI	GCATC	4 cut(s)	14, 373, 580, 894
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	172, 277, 278
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 512, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 503
Bse118I	RCCGGY	1 cut(s)	923
Bse1I	ACTGG	1 cut(s)	826
BseBI	CCWGG	2 cut(s)	279, 404
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	172, 277, 278
BseGI	GGATG	4 cut(s)	5, 152, 388, 595
BseLI	CCNNNNNNNGG	2 cut(s)	409, 503
BseMII	CTCAG	3 cut(s)	71, 500, 531
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	1 cut(s)	161
BseX3I	CGGCCG	1 cut(s)	921
BseYI	CCCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	2 cut(s)	924, 928
BshFI	GGCC	1 cut(s)	923
BshVI	ATCGAT	1 cut(s)	376
BsiEI	CGRYCG	2 cut(s)	924, 928
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	409, 503
BsmAI	GTCTC	2 cut(s)	214, 532
BsmFI	GGGAC	1 cut(s)	786
BsnI	GGCC	1 cut(s)	923
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	373, 536, 765, 822
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	4 cut(s)	51, 138, 907, 920
BspANI	GGCC	1 cut(s)	923
BspCNI	CTCAG	3 cut(s)	70, 499, 532
BspDI	ATCGAT	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	774
BspPI	GGATC	2 cut(s)	381, 817
BspQI	GCTCTTC	1 cut(s)	552
BspTNI	GGTCTC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	923
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	1 cut(s)	923
BssECI	CCNNGG	3 cut(s)	172, 277, 278
BssMI	GATC	4 cut(s)	373, 536, 765, 822
Bst2UI	CCWGG	2 cut(s)	279, 404
Bst4CI	ACNGT	5 cut(s)	110, 118, 160, 352, 632
Bst6I	CTCTTC	1 cut(s)	552
BstDEI	CTNAG	4 cut(s)	57, 63, 486, 540
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	4 cut(s)	5, 152, 388, 595
BstKTI	GATC	4 cut(s)	376, 539, 768, 825
BstMAI	GTCTC	2 cut(s)	214, 532
BstMBI	GATC	4 cut(s)	373, 536, 765, 822
BstMCI	CGRYCG	2 cut(s)	924, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	279, 404
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	277, 402
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
BstZI	CGGCCG	1 cut(s)	921
Bsu15I	ATCGAT	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	923
BsuTUI	ATCGAT	1 cut(s)	376
BtsCI	GGATG	4 cut(s)	5, 152, 388, 595
BtsIMutI	CAGTG	2 cut(s)	156, 637
Cfr10I	RCCGGY	1 cut(s)	923
Cfr13I	GGNCC	1 cut(s)	773
ClaI	ATCGAT	1 cut(s)	376
CviAII	CATG	4 cut(s)	310, 482, 749, 897
DdeI	CTNAG	4 cut(s)	57, 63, 486, 540
DpnI	GATC	4 cut(s)	375, 538, 767, 824
DpnII	GATC	4 cut(s)	373, 536, 765, 822
EaeI	YGGCCR	1 cut(s)	921
EagI	CGGCCG	1 cut(s)	921
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EclXI	CGGCCG	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	773
Eco52I	CGGCCG	1 cut(s)	921
Eco57I	CTGAAG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	277, 402
EcoRV	GATATC	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	4 cut(s)	313, 485, 752, 900
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	4 cut(s)	309, 481, 748, 896
FauI	CCCGC	3 cut(s)	58, 131, 900
FblI	GTMKAC	3 cut(s)	354, 753, 889
Fnu4HI	GCNGC	1 cut(s)	921
FokI	GGATG	3 cut(s)	139, 395, 602
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	921
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	921
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	923
HapII	CCGG	1 cut(s)	924
Hin1II	CATG	4 cut(s)	313, 485, 752, 900
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	1 cut(s)	911
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	2 cut(s)	188, 486
Hpy166II	GTNNAC	6 cut(s)	106, 255, 355, 397, 754, 890
Hpy188I	TCNGA	4 cut(s)	60, 211, 541, 938
Hpy188III	TCNNGA	2 cut(s)	727, 865
Hpy8I	GTNNAC	6 cut(s)	106, 255, 355, 397, 754, 890
HpyAV	CCTTC	2 cut(s)	206, 284
HpyCH4III	ACNGT	5 cut(s)	110, 118, 160, 352, 632
HpyCH4IV	ACGT	2 cut(s)	238, 357
HpyCH4V	TGCA	1 cut(s)	593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	4 cut(s)	57, 63, 486, 540
HpySE526I	ACGT	2 cut(s)	238, 357
Hsp92II	CATG	4 cut(s)	313, 485, 752, 900
Kzo9I	GATC	4 cut(s)	373, 536, 765, 822
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	1 cut(s)	174
LweI	GCATC	4 cut(s)	14, 373, 580, 894
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	238, 357
MaeIII	GTNAC	2 cut(s)	305, 641
MalI	GATC	4 cut(s)	375, 538, 767, 824
MboI	GATC	4 cut(s)	373, 536, 765, 822
MboII	GAAGA	2 cut(s)	539, 662
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	5 cut(s)	74, 163, 555, 761, 932
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	6 cut(s)	182, 287, 406, 535, 763, 819
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	5 cut(s)	260, 318, 327, 803, 843
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	2 cut(s)	279, 404
MvaI	CCWGG	2 cut(s)	279, 404
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	4 cut(s)	373, 536, 765, 822
NlaIII	CATG	4 cut(s)	313, 485, 752, 900
NlaIV	GGNNCC	1 cut(s)	774
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	485
PasI	CCCWGGG	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	1 cut(s)	911
PflFI	GACNNNGTC	1 cut(s)	524
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	1 cut(s)	922
Psp6I	CCWGG	2 cut(s)	277, 402
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	277, 402
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	536
PsyI	GACNNNGTC	1 cut(s)	524
SalI	GTCGAC	1 cut(s)	752
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	5 cut(s)	260, 318, 327, 803, 843
SatI	GCNGC	1 cut(s)	921
Sau3AI	GATC	4 cut(s)	373, 536, 765, 822
Sau96I	GGNCC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	279, 404
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	8 cut(s)	44, 226, 241, 360, 405, 417, 492, 669
SfaNI	GCATC	4 cut(s)	14, 373, 580, 894
SinI	GGWCC	1 cut(s)	773
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	5 cut(s)	74, 163, 555, 761, 932
SsiI	CCGC	4 cut(s)	51, 138, 907, 920
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	277, 402
TaaI	ACNGT	5 cut(s)	110, 118, 160, 352, 632
TaiI	ACGT	2 cut(s)	241, 360
TaqI	TCGA	4 cut(s)	376, 602, 753, 768
TaqII	GACCGA	1 cut(s)	790
TasI	AATT	5 cut(s)	74, 163, 555, 761, 932
TauI	GCSGC	1 cut(s)	923
TfiI	GAWTC	1 cut(s)	911
Tru1I	TTAA	5 cut(s)	260, 318, 327, 803, 843
Tru9I	TTAA	5 cut(s)	260, 318, 327, 803, 843
TscAI	CASTG	2 cut(s)	163, 637
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	666, 737
TspGWI	ACGGA	3 cut(s)	551, 731, 747
TspRI	CASTG	2 cut(s)	163, 637
Tth111I	GACNNNGTC	1 cut(s)	524
Van91I	CCANNNNNTGG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	773
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	932
XceI	RCATGY	1 cut(s)	485
XmiI	GTMKAC	3 cut(s)	354, 753, 889
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.