Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011417

Physical Location & Seq

Genomic Coordinates Reverse (-)

55621865 .. 55640515

Gene Structure 18651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG392400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTACGATGACTTCTTCTTAAGTTCTTATCCTCACCAGCCTAAACCCCTCTCTCAGACTATCCGTCTCGCTCTTCTCTCTCTGCGTCTCCCACATCTTCAAAGCACGCAGAGACGGAGTGCTAGAAGTACTAAGTTGCTCGAATTGCTCGGAAAACTCAACCAAGAGAATGTGAACAGTTTGACAATTCTTGTTATGGGGAAAGGTGGGGTTGGGAAATCATCCACTGTGAACTCACTCATTGGTGAAAGGGCTGTTTCTATTAGTCCTTTTCAGTCTGAAGGAACCAGAGCTGTGATGGTTTCCCGCTCAAGGGCAGGATTTACCCTAAACATCATTGACACCCCTGGGCTCATAGAAGGAGGATATATTAATGACATGGCACTTAATAATATAAAAAGTTTCCTTCTGAACAAGACCATAGACGTTCTACTCTATGTGGATCGATTGGATGCGTATAGAGTGGACAACTTGGATAGGGAGGTGGTCAAAGCCATTACTGATACTTTTGGAAAAGGGATATGGAATAGAGCCTTGGTTGTCCTGACACACGCACAGCTCTCACCACCAGATGGTTTGCCTTACGATGAGTTTGTCTCCAAAAGATCAGAATCTCTTTTAAAAGCTGTTCGTCTTGGTGCTGGGTTAAGAAAACAGGAAGTGCAGGGCTCTACTATTCCTGTTGTTTTGGTTGAGAACAGTGGGAGATGCAACAAGAATGAAAAGGATGAAAAGGTTCTTCCAAATGGAACTGCTTGGATACCCCATGTTGTCCAAACAATCACAGAAGTCATCTTGGGTGGAAGCAAGTCAATTTTTGTTGACCAGAAGTTGATTGAGGGGCCAAACCCCAATGCTAGAGGGAAAATCTTAATTCCTGTAATTTTGGCGCTCCAGTACTTTTTTGTGATTAAACCGATAGAACGTCGGATCAGGACTGACATTGCAAGAGAGAGCAGACCATCCTGGGAGATGCGGGATACCGCTAGTCGCAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042170 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1

Protein Analysis

333

Amino Acids

37.1

Weight (kDa)

9.75

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsgA_GTPase	PF03193	56 - 120	2.3e-06	RsgA GTPase
AIG1	PF04548	61 - 211	1.9e-32	AIG1 family
MMR_HSR1	PF01926	63 - 167	1.9e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05000 AT5G05000 AT5G05000
fragaria_vesca	FvH4_6g30520 FvH4_6g30520
malus_domestica	MD09G1219200.v1.1 MD17G1202600.v1.1
prunus_persica	Prupe.3G078000_v2.0.a1 Prupe.3G078000_v2.0.a1
pyrus_communis	pycom09g13720
rosa_chinensis	RchiOBHm_Chr2g0136921
rosa_laevigata	RLG00000019589
rosa_multiflora	Rmu_ssc0000071.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107870
rosa_rugosa	Rorug02G0335300 Rorug02G0335400
rosa_samantha	Rh2AG385300 Rh2BG392400 Rh2CG372600
rosa_wichuraiana	Rw2G031520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccBSI	CCGCTC	1 cut(s)	309
AciI	CCGC	3 cut(s)	307, 976, 984
AclWI	GGATC	2 cut(s)	450, 938
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	4 cut(s)	5, 130, 899, 998
AfiI	CCNNNNNNNGG	3 cut(s)	312, 313, 572
AflII	CTTAAG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	101
AhdI	GACNNNNNGTC	1 cut(s)	63
AjnI	CCWGG	2 cut(s)	346, 965
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	3 cut(s)	293, 559, 626
AluI	AGCT	3 cut(s)	293, 559, 626
Alw26I	GTCTC	4 cut(s)	71, 92, 106, 601
AlwI	GGATC	2 cut(s)	450, 938
AoxI	GGCC	1 cut(s)	842
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	892
AspS9I	GGNCC	1 cut(s)	842
AsuHPI	GGTGA	3 cut(s)	26, 257, 555
BanII	GRGCYC	2 cut(s)	354, 671
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BccI	CCATC	3 cut(s)	292, 566, 970
BciT130I	CCWGG	2 cut(s)	348, 967
BciVI	GTATCC	2 cut(s)	753, 973
BcoDI	GTCTC	4 cut(s)	71, 92, 106, 601
BfaI	CTAG	3 cut(s)	123, 858, 987
BfoI	RGCGCY	1 cut(s)	893
BfrI	CTTAAG	1 cut(s)	19
BfuI	GTATCC	2 cut(s)	753, 973
BmcAI	AGTACT	3 cut(s)	130, 899, 998
Bme1390I	CCNGG	2 cut(s)	348, 967
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	2 cut(s)	286, 843
BmrFI	CCNGG	2 cut(s)	348, 967
BmsI	GCATC	3 cut(s)	442, 698, 963
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	1 cut(s)	878
BpuEI	CTTGAG	1 cut(s)	295
Bsa29I	ATCGAT	1 cut(s)	445
BsaBI	GATNNNNATC	1 cut(s)	610
BsaJI	CCNNGG	4 cut(s)	346, 347, 534, 966
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 313, 572
Bse1I	ACTGG	1 cut(s)	895
Bse3DI	GCAATG	1 cut(s)	942
Bse8I	GATNNNNATC	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	348, 967
BseCI	ATCGAT	1 cut(s)	445
BseDI	CCNNGG	4 cut(s)	346, 347, 534, 966
BseGI	GGATG	4 cut(s)	221, 457, 733, 962
BseJI	GATNNNNATC	1 cut(s)	610
BseLI	CCNNNNNNNGG	3 cut(s)	312, 313, 572
BseMI	GCAATG	1 cut(s)	942
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	895
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	683
BshFI	GGCC	1 cut(s)	844
BshVI	ATCGAT	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	312, 313, 572
BsmAI	GTCTC	4 cut(s)	71, 92, 106, 601
BsmBI	CGTCTC	3 cut(s)	71, 92, 106
BsnI	GGCC	1 cut(s)	844
Bsp1286I	GDGCHC	2 cut(s)	354, 671
Bsp143I	GATC	3 cut(s)	442, 605, 930
BspACI	CCGC	3 cut(s)	307, 976, 984
BspANI	GGCC	1 cut(s)	844
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	286, 843
BspPI	GGATC	2 cut(s)	450, 938
BspQI	GCTCTTC	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	942
BsrI	ACTGG	1 cut(s)	895
BssECI	CCNNGG	4 cut(s)	346, 347, 534, 966
BssMI	GATC	3 cut(s)	442, 605, 930
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	348, 967
Bst4CI	ACNGT	3 cut(s)	179, 229, 701
Bst6I	CTCTTC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	54, 132
BstF5I	GGATG	4 cut(s)	221, 457, 733, 962
BstH2I	RGCGCY	1 cut(s)	893
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	3 cut(s)	445, 608, 933
BstMAI	GTCTC	4 cut(s)	71, 92, 106, 601
BstMBI	GATC	3 cut(s)	442, 605, 930
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	348, 967
BstSCI	CCNGG	2 cut(s)	346, 965
Bsu15I	ATCGAT	1 cut(s)	445
BsuI	GTATCC	2 cut(s)	753, 973
BsuRI	GGCC	1 cut(s)	844
BsuTUI	ATCGAT	1 cut(s)	445
BtsCI	GGATG	4 cut(s)	221, 457, 733, 962
BtsIMutI	CAGTG	2 cut(s)	225, 706
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	1 cut(s)	892
Cfr13I	GGNCC	1 cut(s)	842
ClaI	ATCGAT	1 cut(s)	445
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	4 cut(s)	4, 129, 898, 997
CviAII	CATG	2 cut(s)	379, 767
CviQI	GTAC	4 cut(s)	4, 129, 898, 997
DdeI	CTNAG	2 cut(s)	54, 132
DpnI	GATC	3 cut(s)	444, 607, 932
DpnII	GATC	3 cut(s)	442, 605, 930
DraI	TTTAAA	1 cut(s)	621
DriI	GACNNNNNGTC	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	78
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	2 cut(s)	354, 671
Eco57I	CTGAAG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	346, 965
EcoT14I	CCWWGG	1 cut(s)	534
EcoT38I	GRGCYC	2 cut(s)	354, 671
ErhI	CCWWGG	1 cut(s)	534
Esp3I	CGTCTC	3 cut(s)	71, 92, 106
FaeI	CATG	2 cut(s)	382, 770
FatI	CATG	2 cut(s)	378, 766
FauI	CCCGC	2 cut(s)	314, 969
FokI	GGATG	4 cut(s)	208, 464, 740, 949
FriOI	GRGCYC	2 cut(s)	354, 671
FspBI	CTAG	3 cut(s)	123, 858, 987
GlaI	GCGC	1 cut(s)	891
GsaI	CCCAGC	1 cut(s)	645
GsuI	CTGGAG	1 cut(s)	878
HaeII	RGCGCY	1 cut(s)	893
HaeIII	GGCC	1 cut(s)	844
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	892
Hin1II	CATG	2 cut(s)	382, 770
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HinfI	GANTC	1 cut(s)	611
HphI	GGTGA	3 cut(s)	26, 257, 555
Hpy166II	GTNNAC	4 cut(s)	175, 232, 466, 823
Hpy188I	TCNGA	6 cut(s)	57, 152, 280, 411, 610, 930
Hpy188III	TCNNGA	2 cut(s)	544, 934
Hpy8I	GTNNAC	4 cut(s)	175, 232, 466, 823
Hpy99I	CGWCG	1 cut(s)	930
HpyAV	CCTTC	3 cut(s)	275, 353, 416
HpyCH4III	ACNGT	3 cut(s)	179, 229, 701
HpyCH4IV	ACGT	2 cut(s)	426, 925
HpyCH4V	TGCA	3 cut(s)	664, 711, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	54, 132
HpySE526I	ACGT	2 cut(s)	426, 925
Hsp92II	CATG	2 cut(s)	382, 770
HspAI	GCGC	1 cut(s)	890
Kzo9I	GATC	3 cut(s)	442, 605, 930
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	897
LweI	GCATC	3 cut(s)	442, 698, 963
MaeI	CTAG	3 cut(s)	123, 858, 987
MaeII	ACGT	2 cut(s)	426, 925
MalI	GATC	3 cut(s)	444, 607, 932
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	3 cut(s)	442, 605, 930
MboII	GAAGA	4 cut(s)	7, 65, 89, 731
MhlI	GDGCHC	2 cut(s)	354, 671
MluCI	AATT	5 cut(s)	143, 186, 813, 873, 882
MmeI	TCCRAC	1 cut(s)	908
MnlI	CCTC	6 cut(s)	42, 59, 356, 475, 832, 854
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	7 cut(s)	20, 372, 387, 620, 647, 872, 912
MspCI	CTTAAG	1 cut(s)	19
MspR9I	CCNGG	2 cut(s)	348, 967
MvaI	CCWGG	2 cut(s)	348, 967
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	3 cut(s)	442, 605, 930
NlaIII	CATG	2 cut(s)	382, 770
NlaIV	GGNNCC	2 cut(s)	286, 843
PasI	CCCWGGG	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	611
PflMI	CCANNNNNTGG	1 cut(s)	572
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	346, 965
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	346, 965
PspN4I	GGNNCC	2 cut(s)	286, 843
PspPI	GGNCC	1 cut(s)	842
RsaI	GTAC	4 cut(s)	5, 130, 899, 998
RsaNI	GTAC	4 cut(s)	4, 129, 898, 997
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	7 cut(s)	20, 372, 387, 620, 647, 872, 912
Sau3AI	GATC	3 cut(s)	442, 605, 930
Sau96I	GGNCC	1 cut(s)	842
ScaI	AGTACT	3 cut(s)	130, 899, 998
ScrFI	CCNGG	2 cut(s)	348, 967
SduI	GDGCHC	2 cut(s)	354, 671
SetI	ASST	8 cut(s)	208, 295, 429, 486, 561, 628, 738, 928
SfaNI	GCATC	3 cut(s)	442, 698, 963
SmlI	CTYRAG	2 cut(s)	19, 310
SmoI	CTYRAG	2 cut(s)	19, 310
Sse9I	AATT	5 cut(s)	143, 186, 813, 873, 882
SsiI	CCGC	3 cut(s)	307, 976, 984
SspMI	CTAG	3 cut(s)	123, 858, 987
StyD4I	CCNGG	2 cut(s)	346, 965
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	179, 229, 701
TaiI	ACGT	2 cut(s)	429, 928
TaqI	TCGA	2 cut(s)	141, 445
TasI	AATT	5 cut(s)	143, 186, 813, 873, 882
TatI	WGTACW	3 cut(s)	128, 897, 996
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	7 cut(s)	20, 372, 387, 620, 647, 872, 912
Tru9I	TTAA	7 cut(s)	20, 372, 387, 620, 647, 872, 912
TscAI	CASTG	2 cut(s)	232, 706
TspDTI	ATGAA	2 cut(s)	735, 744
TspGWI	ACGGA	2 cut(s)	53, 130
TspRI	CASTG	2 cut(s)	232, 706
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	3 cut(s)	123, 858, 987
ZrmI	AGTACT	3 cut(s)	130, 899, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.