AT5G07230

phospholipid transporter activity

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2270948 .. 2271610
663 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07230.1

Sequence Viewer

Length: 276 bp
ATGGTATCTCTAAAGTCCCTTGCTGCTATTCTCGTTGCCATGTTTCTTGCCACCGGACCTACGGTTCTAGCCCAGCAGTGCAGAGACGAACTGAGCAATGTGCAGGTGTGCGCGCCGCTGCTTCTGCCCGGTGCGGTCAATCCTGCCGCGAACTCAAATTGCTGCGCTGCCCTCCAAGCAACTAACAAAGATTGTCTATGTAACGCTCTTCGAGCAGCCACCACACTTACCTCTCTTTGTAACCTCCCCTCTTTTGATTGTGGCATAAGTGCCTAG

Protein Analysis

91

Amino Acids

9.28

Weight (kDa)

5.9

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 8 - 73 6.9e-07 Probable lipid transfer
Tryp_alpha_amyl PF00234 27 - 75 5.2e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016633)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07230 AT5G52160 AT5G62080
fragaria_vesca FvH4_7g29091
malus_domestica MD01G1197500.v1.1
prunus_persica Prupe.2G290900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376811
rosa_laevigata RLG00000026568
rosa_roxburghii Rroxscaffold_4G00281700
rosa_samantha Rh1AG415900 Rh1BG375300 Rh1CG389100 Rh1DG405900
rosa_wichuraiana Rw1G036480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
Acc36I ACCTGC 1 cut(s) 94
AccII CGCG 2 cut(s) 113, 149
AciI CCGC 3 cut(s) 116, 134, 147
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
Alw26I GTCTC 1 cut(s) 78
ApeKI GCWGC 5 cut(s) 23, 118, 162, 167, 215
AspLEI GCGC 3 cut(s) 113, 115, 167
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 56
BbvI GCAGC 5 cut(s) 10, 105, 149, 154, 227
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 2 cut(s) 68, 274
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 7 cut(s) 24, 116, 119, 147, 163, 168, 216
BlsI GCNGC 7 cut(s) 25, 117, 120, 148, 164, 169, 217
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 83
BsePI GCGCGC 1 cut(s) 111
BseXI GCAGC 5 cut(s) 10, 105, 149, 154, 227
BseYI CCCAGC 1 cut(s) 72
BsgI GTGCAG 2 cut(s) 100, 122
Bsh1236I CGCG 2 cut(s) 113, 149
BsiSI CCGG 2 cut(s) 54, 129
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BspACI CCGC 3 cut(s) 116, 134, 147
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 2 cut(s) 113, 149
BspMI ACCTGC 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 103
BssHII GCGCGC 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 92
BstFNI CGCG 2 cut(s) 113, 149
BstHHI GCGC 3 cut(s) 113, 115, 167
BstMAI GTCTC 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 124, 176, 212
BstSCI CCNGG 1 cut(s) 127
BstUI CGCG 2 cut(s) 113, 149
BstV1I GCAGC 5 cut(s) 10, 105, 149, 154, 227
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 3 cut(s) 113, 115, 167
Cfr13I GGNCC 1 cut(s) 56
CviAII CATG 1 cut(s) 40
CviJI RGCY 2 cut(s) 71, 218
CviKI_1 RGCY 2 cut(s) 71, 218
DdeI CTNAG 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 1 cut(s) 43
FaiI YATR 3 cut(s) 41, 199, 266
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 7 cut(s) 24, 116, 119, 147, 163, 168, 216
Fsp4HI GCNGC 7 cut(s) 24, 116, 119, 147, 163, 168, 216
FspBI CTAG 2 cut(s) 68, 274
GlaI GCGC 3 cut(s) 112, 114, 166
GluI GCNGC 7 cut(s) 24, 116, 119, 147, 163, 168, 216
GsaI CCCAGC 1 cut(s) 76
HapII CCGG 2 cut(s) 54, 129
HhaI GCGC 3 cut(s) 113, 115, 167
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 3 cut(s) 111, 113, 165
HinP1I GCGC 3 cut(s) 111, 113, 165
HpaII CCGG 2 cut(s) 54, 129
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 81, 103
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 176, 212
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 3 cut(s) 111, 113, 165
LguI GCTCTTC 1 cut(s) 213
LpnPI CCDG 5 cut(s) 67, 86, 89, 142, 156
Lsp1109I GCAGC 5 cut(s) 10, 105, 149, 154, 227
MaeI CTAG 2 cut(s) 68, 274
MaeIII GTNAC 2 cut(s) 200, 239
MboII GAAGA 1 cut(s) 200
MluCI AATT 1 cut(s) 157
MnlI CCTC 4 cut(s) 182, 241, 254, 259
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 2 cut(s) 54, 129
MspR9I CCNGG 1 cut(s) 129
MvnI CGCG 2 cut(s) 113, 149
MwoI GCNNNNNNNGC 3 cut(s) 124, 176, 212
NciI CCSGG 1 cut(s) 129
NlaIII CATG 1 cut(s) 43
PaqCI CACCTGC 1 cut(s) 94
PauI GCGCGC 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 213
PkrI GCNGC 7 cut(s) 25, 117, 120, 148, 164, 169, 217
PspFI CCCAGC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 56
PteI GCGCGC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 213
SatI GCNGC 7 cut(s) 24, 116, 119, 147, 163, 168, 216
Sau96I GGNCC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 129
SetI ASST 4 cut(s) 61, 108, 233, 246
SinI GGWCC 1 cut(s) 56
Sse9I AATT 1 cut(s) 157
SsiI CCGC 3 cut(s) 116, 134, 147
SspMI CTAG 2 cut(s) 68, 274
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 157
TauI GCSGC 2 cut(s) 118, 149
TscAI CASTG 1 cut(s) 83
TseI GCWGC 5 cut(s) 23, 118, 162, 167, 215
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 56
XspI CTAG 2 cut(s) 68, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.