Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016633

Physical Location & Seq

Genomic Coordinates Forward (+)

21195044 .. 21195763

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCAGCTTCGTCCAAGTACTCTTCCATGTCATTCATGAAGGTGGCAATGATGGTGGCGCTGGTCTTGGTGGTGGCAGCCACTGTGGTGGATGGACAAAGCTGCAATGCGCAGCTGAGTACACTGAACGTGTGTGGTGAGTTTGTGGTTCCCGGAGCTGACAGGACCAACCCAAGTGCCGAATGTTGCAATGCTCTTGAGGCAGTGCCAAACGAATGCCTTTGCAACACGTTTCGCATTGCCTCTAGGCTTCCCTCTCGCTGCAACATTCCTACACTTTCATGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0015711 GO:0015748 GO:0015914 GO:0016043 GO:0033036 GO:0051179 GO:0051234 GO:0061024 GO:0071702 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

96

Amino Acids

10.07

Weight (kDa)

6.07

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 79	1.1e-07	Probable lipid transfer
Tryp_alpha_amyl	PF00234	35 - 94	4.1e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07230 AT5G52160 AT5G62080
fragaria_vesca	FvH4_7g29091
malus_domestica	MD01G1197500.v1.1
prunus_persica	Prupe.2G290900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376811
rosa_laevigata	RLG00000026568
rosa_roxburghii	Rroxscaffold_4G00281700
rosa_samantha	Rh1AG415900 Rh1BG375300 Rh1CG389100 Rh1DG405900
rosa_wichuraiana	Rw1G036480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
AfaI	GTAC	2 cut(s)	20, 121
AflIII	ACRYGT	2 cut(s)	129, 228
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	8, 102, 115, 158
AluI	AGCT	4 cut(s)	8, 102, 115, 158
AlwNI	CAGNNNCTG	1 cut(s)	83
ApeKI	GCWGC	5 cut(s)	5, 77, 102, 112, 261
AspLEI	GCGC	2 cut(s)	61, 112
AspS9I	GGNCC	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	165
BbvI	GCAGC	5 cut(s)	17, 89, 89, 124, 248
BccI	CCATC	2 cut(s)	46, 86
BcnI	CCSGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	62
BisI	GCNGC	5 cut(s)	6, 78, 103, 113, 262
BlsI	GCNGC	5 cut(s)	7, 79, 104, 114, 263
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	153
Bse3DI	GCAATG	4 cut(s)	54, 112, 196, 237
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	4 cut(s)	54, 112, 196, 237
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	5 cut(s)	17, 89, 89, 124, 248
BsiSI	CCGG	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	150
BsrDI	GCAATG	4 cut(s)	54, 112, 196, 237
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	61, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	5 cut(s)	17, 89, 89, 124, 248
BstXI	CCANNNNNNTGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	3 cut(s)	81, 122, 210
CaiI	CAGNNNCTG	1 cut(s)	83
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	2 cut(s)	61, 112
Cfr13I	GGNCC	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	19, 120
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	3 cut(s)	28, 37, 282
CviJI	RGCY	6 cut(s)	8, 80, 102, 115, 158, 250
CviKI_1	RGCY	6 cut(s)	8, 80, 102, 115, 158, 250
CviQI	GTAC	2 cut(s)	19, 120
DdeI	CTNAG	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	165
FaeI	CATG	3 cut(s)	31, 40, 285
FaiI	YATR	3 cut(s)	29, 38, 283
FatI	CATG	3 cut(s)	27, 36, 281
Fnu4HI	GCNGC	5 cut(s)	6, 78, 103, 113, 262
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	6, 78, 103, 113, 262
FspBI	CTAG	1 cut(s)	246
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	2 cut(s)	60, 111
GluI	GCNGC	5 cut(s)	6, 78, 103, 113, 262
HaeII	RGCGCY	1 cut(s)	62
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	2 cut(s)	61, 112
Hin1II	CATG	3 cut(s)	31, 40, 285
Hin6I	GCGC	2 cut(s)	59, 110
HinP1I	GCGC	2 cut(s)	59, 110
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	37, 197
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	129, 230
HpyCH4V	TGCA	5 cut(s)	105, 189, 225, 264, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	2 cut(s)	129, 230
Hsp92II	CATG	3 cut(s)	31, 40, 285
HspAI	GCGC	2 cut(s)	59, 110
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	3 cut(s)	47, 148, 166
Lsp1109I	GCAGC	5 cut(s)	17, 89, 89, 124, 248
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	2 cut(s)	129, 230
MboII	GAAGA	1 cut(s)	15
MnlI	CCTC	3 cut(s)	193, 253, 265
MslI	CAYNNNNRTG	3 cut(s)	41, 86, 280
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	153
NlaIII	CATG	3 cut(s)	31, 40, 285
NlaIV	GGNNCC	1 cut(s)	150
NsbI	TGCGCA	1 cut(s)	111
OliI	CACNNNNGTG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	36
PctI	GAATGC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	7, 79, 104, 114, 263
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	20, 121
RsaNI	GTAC	2 cut(s)	19, 120
RseI	CAYNNNNRTG	3 cut(s)	41, 86, 280
SatI	GCNGC	5 cut(s)	6, 78, 103, 113, 262
Sau96I	GGNCC	1 cut(s)	165
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	7 cut(s)	10, 45, 104, 117, 132, 160, 233
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	3 cut(s)	41, 86, 280
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	132, 233
TatI	WGTACW	2 cut(s)	18, 119
TscAI	CASTG	3 cut(s)	88, 129, 210
TseI	GCWGC	5 cut(s)	5, 77, 102, 112, 261
TspDTI	ATGAA	3 cut(s)	25, 53, 270
TspRI	CASTG	3 cut(s)	88, 129, 210
VpaK11BI	GGWCC	1 cut(s)	165
XspI	CTAG	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.