AT5G62080

phospholipid transporter activity

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
24933471 .. 24934484
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62080.1

Sequence Viewer

Length: 288 bp
ATGGCAATAATGGCATCGTTCAAGTCTTTCGCAGCCGTTCTCAGTGTCCTTTTTCTTGCCATGACTGCTATAGAAACGGTAGTTCAAGCCCAAGAATGTGGCAACGATCTAGCAAATGTGCAGGTATGCGCCGCCATGGTGCTGCCCGGTTCAGGCAGACCAAATTCAGAGTGTTGCGCCGCACTTCAATCTACTAATAGAGATTGTCTATGCAACGCTCTCCGTGCAGCCACCTCTCTTCCTTCGCTTTGTAACCTTCCTCCTGTGGATTGTGGTATAAATGCTTAG

Protein Analysis

95

Amino Acids

9.78

Weight (kDa)

4.59

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 19 - 77 2.1e-06 Probable lipid transfer
Tryp_alpha_amyl PF00234 33 - 91 4.7e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016633)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07230 AT5G52160 AT5G62080
fragaria_vesca FvH4_7g29091
malus_domestica MD01G1197500.v1.1
prunus_persica Prupe.2G290900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376811
rosa_laevigata RLG00000026568
rosa_roxburghii Rroxscaffold_4G00281700
rosa_samantha Rh1AG415900 Rh1BG375300 Rh1CG389100 Rh1DG405900
rosa_wichuraiana Rw1G036480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 112
AciI CCGC 2 cut(s) 132, 180
AcsI RAATTY 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 3 cut(s) 22, 86, 188
ApeKI GCWGC 3 cut(s) 32, 142, 227
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 2 cut(s) 131, 179
AsuC2I CCSGG 1 cut(s) 147
BbvI GCAGC 3 cut(s) 44, 129, 239
BceAI ACGGC 1 cut(s) 20
BcnI CCSGG 1 cut(s) 147
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 5 cut(s) 33, 132, 143, 180, 228
BlsI GCNGC 5 cut(s) 34, 133, 144, 181, 229
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 55
BseXI GCAGC 3 cut(s) 44, 129, 239
BsgI GTGCAG 2 cut(s) 140, 246
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 152
Bsp143I GATC 1 cut(s) 106
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 2 cut(s) 132, 180
BspCNI CTCAG 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 41, 285
BstDSI CCRYGG 1 cut(s) 135
BstHHI GCGC 2 cut(s) 131, 179
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 11, 65, 224
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 44, 129, 239
BstXI CCANNNNNNTGG 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 112
CfoI GCGC 2 cut(s) 131, 179
CviAII CATG 2 cut(s) 61, 136
CviJI RGCY 3 cut(s) 35, 89, 230
CviKI_1 RGCY 3 cut(s) 35, 89, 230
DdeI CTNAG 2 cut(s) 41, 285
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 64, 139
FaiI YATR 6 cut(s) 62, 71, 127, 137, 211, 278
FatI CATG 2 cut(s) 60, 135
Fnu4HI GCNGC 5 cut(s) 33, 132, 143, 180, 228
Fsp4HI GCNGC 5 cut(s) 33, 132, 143, 180, 228
FspBI CTAG 1 cut(s) 110
GlaI GCGC 2 cut(s) 130, 178
GluI GCNGC 5 cut(s) 33, 132, 143, 180, 228
HapII CCGG 1 cut(s) 147
HhaI GCGC 2 cut(s) 131, 179
Hin1II CATG 2 cut(s) 64, 139
Hin6I GCGC 2 cut(s) 129, 177
HinP1I GCGC 2 cut(s) 129, 177
HpaII CCGG 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 252, 266
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 121, 213, 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 65, 224
HpyF3I CTNAG 2 cut(s) 41, 285
Hsp92II CATG 2 cut(s) 64, 139
HspAI GCGC 2 cut(s) 129, 177
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 107, 138, 160, 276
Lsp1109I GCAGC 3 cut(s) 44, 129, 239
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 230
MluCI AATT 1 cut(s) 163
MnlI CCTC 2 cut(s) 244, 270
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 11, 65, 224
NciI CCSGG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 135
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 64, 139
PkrI GCNGC 5 cut(s) 34, 133, 144, 181, 229
SatI GCNGC 5 cut(s) 33, 132, 143, 180, 228
Sau3AI GATC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 147
SetI ASST 3 cut(s) 126, 236, 258
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 69
Sse9I AATT 1 cut(s) 163
SsiI CCGC 2 cut(s) 132, 180
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 79
TasI AATT 1 cut(s) 163
TauI GCSGC 2 cut(s) 134, 182
TscAI CASTG 1 cut(s) 49
TseI GCWGC 3 cut(s) 32, 142, 227
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 49
XapI RAATTY 1 cut(s) 163
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.