Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015962

Physical Location & Seq

Genomic Coordinates Forward (+)

3441751 .. 3444267

Gene Structure 2517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGGAGCAATTGATCTCTCTTTCTCACAGAGTCTTCTCTTCTCTTCGTCGCGTTCCAATCTTTCCTCCTCCACACACCGTTCCGTCTCTTTTTTGCCGCCGGGAAGCAAGTCACGGTGTCTGCCGCCGTTGCGTTCAATGAGTCATGACGACGACACGGCCTCAAAGGAGGTGAAGCTATGGGGTGGAAGGTTCGAAGAGAGTGTCACTGAGAAAGTGGAGAAGTTCACTGAGTCAATTTCATTTGATAAGGTTCTCTACAAGCAGGACATTATGGGTAGCAAAGCTCATGCTTCAATGCTTGCTCACCAGGGGCTAATAACTGATAGCGATAAAGATAGCATTTTGAGAGGTCTTGATGATATTGAGAGACAAATTGAAGCAAATAAGTTTGAATGGAGGACTGATCGAGAAGATGTGCATATGAACATTGAAGCAGCTCTTACTGATCTTATTGGTGAACCTGCAAAGAAACTTCATACTGCAAGGAGCAGAAATGACCAAGTTGCTACTGACTTCAGGCTTTGGTGTCGTGATGCTATCGATACAATTATTGTCAAAATCAGAAATCTTCAGAGAGCACTTGTTGAACTGGCTTTGAAGAATGAGGCTTTGATTGTTCCTGGTTATACTCATCTTCAAAGAGCTCAGCCTGTTTTACTCCCACACGTTCTCTTAACTTTTGTAGAGCAGCTCGAACGTGATGCTGGTCGTTATGTGGACTGTCGAGCAAGGCTAAATTTCTCCCCCCTGGGAGCTTGTGCTTTGGCTGGAACTGGTCTGCCTATTGATAGGTTTATGACTGCAAATGCTCTTGGATTTACCGAACCAATGAGAAACAGTATCGATGCAGTCTCAGACCGAGACTTCGTGCTGGAGTTCTTATATACAAATGCCAACACCGGTATTCATTTATCACGGCTTGGAGAAGAGTGGGTACTGTGGGCTTCCGAGGAGTTTGGGTTCATGACTCCAAGTGATTCTGTGTCAACCGGAAGTAGTATAATGCCACAGAAGAAAAATCCAGACCCAATGGAACTTGTCAGAGGAAAATCCGCAAGAGTCATAGGCGATCTGGTCACTGTCTTAACACTGTGCAAAGGACTTCCCCTTGCTTACAACAGAGATTTTCAAGAAGACAAAGAGCCGATGTTCGATAGTACCAAGACAATAATGGGAATGATCGATGTATCTGCAGAATTTGCTCAGAATGTTACATTCAACGAAGACAGAATCAAGAAAAGTCTTCCCGCAGGACATCTTGATGCGACTACTCTCGCTGATTATCTTGTGAAGAAGGGGATGCCTTTTAGGTCATCTCATGACATAGTTGGAAAACTAGTTGGAGTTTGCGTCTCAAAAGGCTGTGAACTTCAGAACTTAAGTCTTGAAGAGATGAAAAAGCTGAGCCCTGTGTTTGAAGAAGATGTGTTTGGATTTTTGGGGGTTGAAAATTCAGTCAATAAGTTCAGTTCCTATGGGTCAACAGGATCAAACTGTGTTGCTGAGCAACTTGGCTACTGGGTCAACAAGCTCAACATTACTTCCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

517

Amino Acids

57.51

Weight (kDa)

5.6

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lyase_1	PF00206	63 - 357	4.5e-73	Lyase
ASL_C2	PF14698	421 - 488	1.1e-25	Argininosuccinate lyase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10920
fragaria_vesca	FvH4_5g34710
malus_domestica	MD12G1008900.v1.1 MD14G1006400.v1.1
prunus_persica	Prupe.1G532200_v2.0.a1
pyrus_communis	pycom12g00670 pycom14g00490
rosa_chinensis	RchiOBHm_Chr7g0216141
rosa_laevigata	RLG00000002592
rosa_multiflora	Rmu_sc0021916.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243610
rosa_rugosa	Rorug07G0159000
rosa_samantha	Rh7AG296200 Rh7BG288500
rosa_wichuraiana	Rw7G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccII	CGCG	1 cut(s)	52
AciI	CCGC	4 cut(s)	98, 125, 1056, 1251
AclWI	GGATC	1 cut(s)	1498
AcsI	RAATTY	3 cut(s)	739, 1199, 1453
AcuI	CTGAAG	3 cut(s)	502, 557, 1358
AfaI	GTAC	2 cut(s)	939, 1162
AflII	CTTAAG	1 cut(s)	1381
AflIII	ACRYGT	1 cut(s)	667
AgeI	ACCGGT	1 cut(s)	902
AhlI	ACTAGT	1 cut(s)	1339
AjnI	CCWGG	3 cut(s)	309, 622, 750
AjuI	GAANNNNNNNTTGG	2 cut(s)	1416, 1448
AloI	GAACNNNNNNTCC	2 cut(s)	947, 979
AluBI	AGCT	8 cut(s)	178, 287, 440, 647, 694, 758, 1405, 1534
AluI	AGCT	8 cut(s)	178, 287, 440, 647, 694, 758, 1405, 1534
Alw21I	GWGCWC	2 cut(s)	583, 649
Alw26I	GTCTC	5 cut(s)	91, 364, 858, 859, 1360
AlwI	GGATC	1 cut(s)	1498
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	437, 691
ApoI	RAATTY	3 cut(s)	739, 1199, 1453
ArsI	GACNNNNNNTTYG	4 cut(s)	189, 221, 851, 883
AsiGI	ACCGGT	1 cut(s)	902
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	184, 299, 470
AsuII	TTCGAA	1 cut(s)	195
BanII	GRGCYC	2 cut(s)	649, 1412
BarI	GAAGNNNNNNTAC	2 cut(s)	921, 953
BbsI	GAAGAC	4 cut(s)	26, 1143, 1233, 1238
Bbv12I	GWGCWC	2 cut(s)	583, 649
BbvI	GCAGC	2 cut(s)	449, 703
BceAI	ACGGC	3 cut(s)	112, 174, 935
BcgI	CGANNNNNNTGC	4 cut(s)	686, 720, 1175, 1209
BciT130I	CCWGG	3 cut(s)	311, 624, 752
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	5 cut(s)	91, 364, 858, 859, 1360
BcuI	ACTAGT	1 cut(s)	1339
BfaI	CTAG	1 cut(s)	1340
BfmI	CTRYAG	1 cut(s)	1194
BfrI	CTTAAG	1 cut(s)	1381
BfuAI	ACCTGC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	98, 125, 438, 692
BlpI	GCTNAGC	3 cut(s)	648, 1406, 1506
BlsI	GCNGC	4 cut(s)	99, 126, 439, 693
Bme1390I	CCNGG	4 cut(s)	102, 311, 624, 752
BmrFI	CCNGG	4 cut(s)	102, 311, 624, 752
BmrI	ACTGGG	1 cut(s)	1531
BmsI	GCATC	5 cut(s)	526, 694, 838, 1255, 1293
BmuI	ACTGGG	1 cut(s)	1531
BpiI	GAAGAC	4 cut(s)	26, 1143, 1233, 1238
BpmI	CTGGAG	1 cut(s)	896
Bpu1102I	GCTNAGC	3 cut(s)	648, 1406, 1506
Bpu14I	TTCGAA	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	102
Bsa29I	ATCGAT	3 cut(s)	543, 846, 1185
BsaJI	CCNNGG	4 cut(s)	310, 750, 751, 951
BsaWI	WCCGGW	2 cut(s)	902, 992
BsaXI	ACNNNNNCTCC	4 cut(s)	947, 977, 1338, 1368
Bse118I	RCCGGY	1 cut(s)	902
Bse1I	ACTGG	3 cut(s)	597, 781, 1526
BseBI	CCWGG	3 cut(s)	311, 624, 752
BseCI	ATCGAT	3 cut(s)	543, 846, 1185
BseDI	CCNNGG	4 cut(s)	310, 750, 751, 951
BseGI	GGATG	1 cut(s)	1308
BseMII	CTCAG	7 cut(s)	201, 222, 662, 870, 1220, 1397, 1497
BseNI	ACTGG	3 cut(s)	597, 781, 1526
BseRI	GAGGAG	2 cut(s)	58, 968
BseXI	GCAGC	2 cut(s)	449, 703
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	902
BshVI	ATCGAT	3 cut(s)	543, 846, 1185
BsiHKAI	GWGCWC	2 cut(s)	583, 649
BsiSI	CCGG	3 cut(s)	101, 903, 993
BsmAI	GTCTC	5 cut(s)	91, 364, 858, 859, 1360
BsmBI	CGTCTC	2 cut(s)	91, 1360
BsnI	GGCC	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	583, 649, 1412
Bsp143I	GATC	6 cut(s)	13, 406, 448, 1072, 1182, 1490
Bsp1720I	GCTNAGC	3 cut(s)	648, 1406, 1506
BspACI	CCGC	4 cut(s)	98, 125, 1056, 1251
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	7 cut(s)	202, 223, 661, 869, 1219, 1398, 1498
BspDI	ATCGAT	3 cut(s)	543, 846, 1185
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	3 cut(s)	145, 966, 1321
BspMAI	CTGCAG	1 cut(s)	1198
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	1498
BspT104I	TTCGAA	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	1381
BsrFI	RCCGGY	1 cut(s)	902
BsrI	ACTGG	3 cut(s)	597, 781, 1526
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	4 cut(s)	310, 750, 751, 951
BssMI	GATC	6 cut(s)	13, 406, 448, 1072, 1182, 1490
Bst2UI	CCWGG	3 cut(s)	311, 624, 752
Bst4CI	ACNGT	8 cut(s)	80, 117, 725, 842, 942, 1084, 1095, 1499
Bst6I	CTCTTC	5 cut(s)	44, 49, 192, 924, 1386
BstAFI	CTTAAG	1 cut(s)	1381
BstAPI	GCANNNNNTGC	1 cut(s)	1202
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	7 cut(s)	210, 231, 648, 856, 1206, 1406, 1506
BstF5I	GGATG	1 cut(s)	1308
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	6 cut(s)	16, 409, 451, 1075, 1185, 1493
BstMAI	GTCTC	5 cut(s)	91, 364, 858, 859, 1360
BstMBI	GATC	6 cut(s)	13, 406, 448, 1072, 1182, 1490
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 1202
BstNI	CCWGG	3 cut(s)	311, 624, 752
BstSCI	CCNGG	4 cut(s)	100, 309, 622, 750
BstSFI	CTRYAG	1 cut(s)	1194
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	449, 703
BstV2I	GAAGAC	4 cut(s)	26, 1143, 1233, 1238
Bsu15I	ATCGAT	3 cut(s)	543, 846, 1185
BsuRI	GGCC	1 cut(s)	161
BsuTUI	ATCGAT	3 cut(s)	543, 846, 1185
BtsCI	GGATG	1 cut(s)	1308
BtsIMutI	CAGTG	4 cut(s)	207, 228, 1080, 1091
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	3 cut(s)	145, 966, 1321
Cfr10I	RCCGGY	1 cut(s)	902
ClaI	ATCGAT	3 cut(s)	543, 846, 1185
CseI	GACGC	1 cut(s)	1342
Csp6I	GTAC	2 cut(s)	938, 1161
CspAI	ACCGGT	1 cut(s)	902
CviAII	CATG	4 cut(s)	146, 290, 967, 1322
CviQI	GTAC	2 cut(s)	938, 1161
DdeI	CTNAG	7 cut(s)	210, 231, 648, 856, 1206, 1406, 1506
DpnI	GATC	6 cut(s)	15, 408, 450, 1074, 1184, 1492
DpnII	GATC	6 cut(s)	13, 406, 448, 1072, 1182, 1490
Eam1104I	CTCTTC	5 cut(s)	44, 49, 192, 924, 1386
EarI	CTCTTC	5 cut(s)	44, 49, 192, 924, 1386
Ecl136II	GAGCTC	1 cut(s)	647
Eco24I	GRGCYC	2 cut(s)	649, 1412
Eco53kI	GAGCTC	1 cut(s)	647
Eco57I	CTGAAG	3 cut(s)	502, 557, 1358
EcoICRI	GAGCTC	1 cut(s)	647
EcoRII	CCWGG	3 cut(s)	309, 622, 750
EcoT38I	GRGCYC	2 cut(s)	649, 1412
Esp3I	CGTCTC	2 cut(s)	91, 1360
FaeI	CATG	4 cut(s)	149, 293, 970, 1325
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	4 cut(s)	145, 289, 966, 1321
FauI	CCCGC	1 cut(s)	1258
FauNDI	CATATG	1 cut(s)	423
Fnu4HI	GCNGC	4 cut(s)	98, 125, 438, 692
FokI	GGATG	1 cut(s)	1315
FriOI	GRGCYC	2 cut(s)	649, 1412
Fsp4HI	GCNGC	4 cut(s)	98, 125, 438, 692
FspBI	CTAG	1 cut(s)	1340
GluI	GCNGC	4 cut(s)	98, 125, 438, 692
GsuI	CTGGAG	1 cut(s)	896
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	3 cut(s)	101, 903, 993
HgaI	GACGC	1 cut(s)	1342
Hin1II	CATG	4 cut(s)	149, 293, 970, 1325
HincII	GTYRAC	3 cut(s)	990, 1485, 1528
HindII	GTYRAC	3 cut(s)	990, 1485, 1528
HinfI	GANTC	7 cut(s)	31, 142, 233, 970, 980, 1062, 1233
HpaII	CCGG	3 cut(s)	101, 903, 993
HphI	GGTGA	3 cut(s)	184, 299, 470
Hpy166II	GTNNAC	7 cut(s)	228, 461, 721, 990, 1370, 1485, 1528
Hpy188I	TCNGA	7 cut(s)	566, 576, 859, 952, 1046, 1209, 1377
Hpy8I	GTNNAC	7 cut(s)	228, 461, 721, 990, 1370, 1485, 1528
Hpy99I	CGWCG	2 cut(s)	52, 155
HpyAV	CCTTC	2 cut(s)	183, 1291
HpyCH4III	ACNGT	8 cut(s)	80, 117, 725, 842, 942, 1084, 1095, 1499
HpyCH4IV	ACGT	2 cut(s)	669, 700
HpyCH4V	TGCA	7 cut(s)	421, 467, 485, 806, 851, 1098, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 1202
HpyF3I	CTNAG	7 cut(s)	210, 231, 648, 856, 1206, 1406, 1506
HpySE526I	ACGT	2 cut(s)	669, 700
Hsp92II	CATG	4 cut(s)	149, 293, 970, 1325
Kzo9I	GATC	6 cut(s)	13, 406, 448, 1072, 1182, 1490
LmnI	GCTCC	3 cut(s)	5, 489, 755
Lsp1109I	GCAGC	2 cut(s)	449, 703
LweI	GCATC	5 cut(s)	526, 694, 838, 1255, 1293
MaeI	CTAG	1 cut(s)	1340
MaeII	ACGT	2 cut(s)	669, 700
MaeIII	GTNAC	4 cut(s)	111, 205, 1078, 1213
MalI	GATC	6 cut(s)	15, 408, 450, 1074, 1184, 1492
MboI	GATC	6 cut(s)	13, 406, 448, 1072, 1182, 1490
MfeI	CAATTG	1 cut(s)	9
MhlI	GDGCHC	3 cut(s)	583, 649, 1412
MluCI	AATT	7 cut(s)	9, 237, 375, 549, 739, 1199, 1453
MlyI	GAGTC	5 cut(s)	40, 151, 242, 964, 1071
MmeI	TCCRAC	2 cut(s)	1312, 1324
MnlI	CCTC	9 cut(s)	76, 79, 163, 172, 344, 393, 601, 946, 1040
MseI	TTAA	3 cut(s)	677, 1088, 1382
MslI	CAYNNNNRTG	1 cut(s)	1263
MspCI	CTTAAG	1 cut(s)	1381
MspI	CCGG	3 cut(s)	101, 903, 993
MspR9I	CCNGG	4 cut(s)	102, 311, 624, 752
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	3 cut(s)	311, 624, 752
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	130, 1202
NciI	CCSGG	1 cut(s)	102
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	6 cut(s)	13, 406, 448, 1072, 1182, 1490
NlaIII	CATG	4 cut(s)	149, 293, 970, 1325
NmuCI	GTSAC	3 cut(s)	111, 205, 1078
NspV	TTCGAA	1 cut(s)	195
PagI	TCATGA	3 cut(s)	145, 966, 1321
PasI	CCCWGGG	1 cut(s)	751
PfeI	GAWTC	2 cut(s)	980, 1233
PinAI	ACCGGT	1 cut(s)	902
PkrI	GCNGC	4 cut(s)	99, 126, 439, 693
PleI	GAGTC	5 cut(s)	39, 150, 241, 964, 1070
PpsI	GAGTC	5 cut(s)	39, 150, 241, 964, 1070
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	3 cut(s)	309, 622, 750
PspGI	CCWGG	3 cut(s)	309, 622, 750
PstI	CTGCAG	1 cut(s)	1198
RsaI	GTAC	2 cut(s)	939, 1162
RsaNI	GTAC	2 cut(s)	938, 1161
RseI	CAYNNNNRTG	1 cut(s)	1263
SacI	GAGCTC	1 cut(s)	649
SaqAI	TTAA	3 cut(s)	677, 1088, 1382
SatI	GCNGC	4 cut(s)	98, 125, 438, 692
Sau3AI	GATC	6 cut(s)	13, 406, 448, 1072, 1182, 1490
SchI	GAGTC	5 cut(s)	40, 151, 242, 964, 1071
ScrFI	CCNGG	4 cut(s)	102, 311, 624, 752
SduI	GDGCHC	3 cut(s)	583, 649, 1412
SfaNI	GCATC	5 cut(s)	526, 694, 838, 1255, 1293
SfcI	CTRYAG	1 cut(s)	1194
SfuI	TTCGAA	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	1263
SmlI	CTYRAG	1 cut(s)	1381
SmoI	CTYRAG	1 cut(s)	1381
SpeI	ACTAGT	1 cut(s)	1339
Sse9I	AATT	7 cut(s)	9, 237, 375, 549, 739, 1199, 1453
SsiI	CCGC	4 cut(s)	98, 125, 1056, 1251
SspMI	CTAG	1 cut(s)	1340
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	4 cut(s)	100, 309, 622, 750
TaaI	ACNGT	8 cut(s)	80, 117, 725, 842, 942, 1084, 1095, 1499
TaiI	ACGT	2 cut(s)	672, 703
TaqI	TCGA	8 cut(s)	195, 409, 543, 696, 727, 846, 1155, 1185
TaqII	GACCGA	1 cut(s)	876
TasI	AATT	7 cut(s)	9, 237, 375, 549, 739, 1199, 1453
TauI	GCSGC	2 cut(s)	100, 127
TfiI	GAWTC	2 cut(s)	980, 1233
Tru1I	TTAA	3 cut(s)	677, 1088, 1382
Tru9I	TTAA	3 cut(s)	677, 1088, 1382
TscAI	CASTG	4 cut(s)	214, 235, 1087, 1098
TseFI	GTSAC	3 cut(s)	111, 205, 1078
TseI	GCWGC	2 cut(s)	437, 691
Tsp45I	GTSAC	3 cut(s)	111, 205, 1078
TspDTI	ATGAA	6 cut(s)	231, 440, 467, 899, 955, 1412
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	4 cut(s)	214, 235, 1087, 1098
Vha464I	CTTAAG	1 cut(s)	1381
XapI	RAATTY	3 cut(s)	739, 1199, 1453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1171
XspI	CTAG	1 cut(s)	1340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.