MD14G1006400.v1.1

Argininosuccinate lyase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
715633 .. 719099
3467 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1006400.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGCATAAGATGGAGGTCCGATGTGCTGCCCAGGCCCAATCCACTGAAACCAAGTCCAAGGAGGCCAAGCTCTGGGGCGGCCGCTTCGAGGAGAGCGTGACTGACGCTGTCGAACGATTTACTGAGTCCATCTCCTTCGACAAAGCCCTTTACAAGCATGATATCATGGGCAGCAAGGCTCACGCTTCCATGCTAGCCAAACAGGGATTGATTACTGTTAATGACCGGGATAGCATCCACAAGGGGCTGAGCGAGATAGAAAGGCTAATTGAGAGTGGCAAGTTTGAATGGAGGACCGACAGAGAAGATGTGCACATGAACATTGAGGCAGCGCTGACTGATTTGATCGGCGAACCGGCTAAGAAGCTCCACACGGCTCGGAGTCGAAACGATCAGGTTTTGACAGATTTTCGATTGTGGATCCGAGACGCGATTGATGCAATTGGAGTGAAGATTAAGTATCTTCAATTTTCGCTCGTCAAATTGGCAATGGAGAACGAGGGTGTTATCGTTCCTGGTTACACGCATTTGCAAAAGGGCTCAGCCTGTTCTGCTTCAGCATTTGCTCTTGGCCTTGAACGTGATGCTGGCCGTTTACTAGATTGTAGAGTGAGGTTGAATTTCTGCCCCTTAGGTGCTTGTGCATTGGCCGGCACTGGACTTCCGATTGATCGGTTTATGACCTCTGATGCTTTAGACTTTACTGCTCCTATGAGGAACAGTATTGATGCAGTGTCAGACCGAGATTTTGTCATGGAGTTTCTTTCTGCTAATGCCATCACAGCCATTCATCTCTCCCGGCTTGGTGAAGAGTGGGTACTGTGGGCTTCAGAGGAGTTTGGATTTGTCACGCCAAGTGACAAGGTTTCAACAGGAAGTAGTATCATGCCTCAGAAGAAAAATCCAGATCCCATGGAACTTGTTCGTGGAAAGTCCGCTAGAGTAGTAGGAGACCTGGTTACCCTTCTCACATTGTGCAAAGGACTTCCCCTTGCTTACAATCGTGATTTGCAGGAAGATAAGGAACCTGTCTTTGACAGCGTGAAGACAATATTGGGGATGCTTGAAGTATCTGCAGAGTTTGCACAGAACATTACCTTTAACAGGGAGAGAATACAAAAGAGTTTACCTGCTGGTCACCTTGATGCCACAACGCTTGCTGATTATCTTGTGAAAAAGGCAAGTTCTGTTGACTAG

Protein Analysis

399

Amino Acids

44.1

Weight (kDa)

5.81

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lyase_1 PF00206 27 - 317 1.1e-61 Lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10920
fragaria_vesca FvH4_5g34710
malus_domestica MD12G1008900.v1.1 MD14G1006400.v1.1
prunus_persica Prupe.1G532200_v2.0.a1
pyrus_communis pycom12g00670 pycom14g00490
rosa_chinensis RchiOBHm_Chr7g0216141
rosa_laevigata RLG00000002592
rosa_multiflora Rmu_sc0021916.1_g000001
rosa_roxburghii Rroxscaffold_3G00243610
rosa_rugosa Rorug07G0159000
rosa_samantha Rh7AG296200 Rh7BG288500
rosa_wichuraiana Rw7G025200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1138
AccB7I CCANNNNNTGG 1 cut(s) 72
AccII CGCG 1 cut(s) 431
AciI CCGC 3 cut(s) 78, 82, 936
AclWI GGATC 3 cut(s) 415, 428, 902
AcoI YGGCCR 3 cut(s) 79, 589, 648
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 2 cut(s) 540, 813
AdeI CACNNNGTG 1 cut(s) 975
AfaI GTAC 1 cut(s) 819
AfeI AGCGCT 1 cut(s) 333
AfiI CCNNNNNNNGG 3 cut(s) 72, 88, 1104
AgsI TTSAA 6 cut(s) 287, 467, 578, 619, 870, 1067
AjnI CCWGG 3 cut(s) 30, 514, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 1037, 1069
AluBI AGCT 2 cut(s) 70, 367
AluI AGCT 2 cut(s) 70, 367
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 420, 945
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 3 cut(s) 415, 428, 902
Aor51HI AGCGCT 1 cut(s) 333
AoxI GGCC 6 cut(s) 33, 63, 79, 571, 589, 648
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 26, 171, 329
ApoI RAATTY 1 cut(s) 619
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 3 cut(s) 16, 34, 294
AsuC2I CCSGG 2 cut(s) 227, 799
AsuHPI GGTGA 2 cut(s) 818, 1130
AsuNHI GCTAGC 1 cut(s) 193
AvaII GGWCC 2 cut(s) 16, 294
AxyI CCTNAGG 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 315
BamHI GGATCC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 542
BarI GAAGNNNNNNTAC 2 cut(s) 801, 833
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 3 cut(s) 13, 183, 341
BccI CCATC 3 cut(s) 4, 137, 785
BceAI ACGGC 2 cut(s) 390, 576
BciT130I CCWGG 3 cut(s) 32, 516, 956
BcnI CCSGG 2 cut(s) 227, 799
BcoDI GTCTC 2 cut(s) 420, 945
BfaI CTAG 4 cut(s) 194, 599, 939, 1195
BfmI CTRYAG 1 cut(s) 1074
BfoI RGCGCY 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 1138
BisI GCNGC 5 cut(s) 27, 79, 82, 172, 330
BlpI GCTNAGC 2 cut(s) 248, 541
BlsI GCNGC 5 cut(s) 28, 80, 83, 173, 331
Bme1390I CCNGG 5 cut(s) 32, 227, 516, 799, 956
Bme18I GGWCC 2 cut(s) 16, 294
BmgT120I GGNCC 3 cut(s) 16, 34, 294
BmiI GGNNCC 2 cut(s) 422, 1026
BmrFI CCNGG 5 cut(s) 32, 227, 516, 799, 956
BmsI GCATC 7 cut(s) 243, 427, 574, 679, 718, 1050, 1135
BmtI GCTAGC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 1052
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu1102I GCTNAGC 2 cut(s) 248, 541
BpuMI CCSGG 2 cut(s) 227, 799
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 3 cut(s) 30, 57, 912
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 88, 1104
Bse118I RCCGGY 2 cut(s) 355, 650
Bse1I ACTGG 1 cut(s) 661
Bse21I CCTNAGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 495
BseBI CCWGG 3 cut(s) 32, 516, 956
BseDI CCNNGG 3 cut(s) 30, 57, 912
BseGI GGATG 2 cut(s) 234, 1065
BseLI CCNNNNNNNGG 3 cut(s) 72, 88, 1104
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 4 cut(s) 114, 239, 555, 905
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 2 cut(s) 104, 848
BseSI GKGCMC 1 cut(s) 315
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 3 cut(s) 13, 183, 341
Bsh1236I CGCG 1 cut(s) 431
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 6 cut(s) 35, 65, 81, 573, 591, 650
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 4 cut(s) 226, 356, 651, 799
BslI CCNNNNNNNGG 3 cut(s) 72, 88, 1104
BsmAI GTCTC 2 cut(s) 420, 945
BsmBI CGTCTC 1 cut(s) 420
BsnI GGCC 6 cut(s) 35, 65, 81, 573, 591, 650
Bso31I GGTCTC 1 cut(s) 945
Bsp1286I GDGCHC 2 cut(s) 315, 542
Bsp143I GATC 5 cut(s) 345, 391, 420, 670, 907
Bsp1720I GCTNAGC 2 cut(s) 248, 541
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 3 cut(s) 78, 82, 936
BspANI GGCC 6 cut(s) 35, 65, 81, 573, 591, 650
BspCNI CTCAG 4 cut(s) 115, 240, 554, 904
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 2 cut(s) 422, 1026
BspMAI CTGCAG 1 cut(s) 1078
BspMI ACCTGC 1 cut(s) 1138
BspOI GCTAGC 1 cut(s) 197
BspPI GGATC 3 cut(s) 415, 428, 902
BspTNI GGTCTC 1 cut(s) 945
BsrDI GCAATG 1 cut(s) 495
BsrFI RCCGGY 2 cut(s) 355, 650
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 2 cut(s) 355, 650
BssECI CCNNGG 3 cut(s) 30, 57, 912
BssMI GATC 5 cut(s) 345, 391, 420, 670, 907
BssT1I CCWWGG 2 cut(s) 57, 912
Bst2UI CCWGG 3 cut(s) 32, 516, 956
Bst4CI ACNGT 3 cut(s) 217, 722, 822
Bst6I CTCTTC 1 cut(s) 804
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstC8I GCNNGC 4 cut(s) 195, 589, 652, 1158
BstDEI CTNAG 6 cut(s) 123, 248, 360, 541, 631, 891
BstDSI CCRYGG 1 cut(s) 912
BstEII GGTNACC 2 cut(s) 958, 1136
BstENI CCTNNNNNAGG 1 cut(s) 1102
BstF5I GGATG 2 cut(s) 234, 1065
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 5 cut(s) 348, 394, 423, 673, 910
BstMAI GTCTC 2 cut(s) 420, 945
BstMBI GATC 5 cut(s) 345, 391, 420, 670, 907
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 32, 437, 551, 782, 1082
BstNI CCWGG 3 cut(s) 32, 516, 956
BstPI GGTNACC 2 cut(s) 958, 1136
BstSCI CCNGG 5 cut(s) 30, 225, 514, 797, 954
BstSFI CTRYAG 1 cut(s) 1074
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 13, 183, 341
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 2 cut(s) 420, 907
BstYI RGATCY 2 cut(s) 420, 907
BstZI CGGCCG 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 631
BsuRI GGCC 6 cut(s) 35, 65, 81, 573, 591, 650
BtgI CCRYGG 1 cut(s) 912
BtsCI GGATG 2 cut(s) 234, 1065
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 42, 654, 738
BveI ACCTGC 1 cut(s) 1138
Cac8I GCNNGC 4 cut(s) 195, 589, 652, 1158
CciNI GCGGCCGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 2 cut(s) 355, 650
Cfr13I GGNCC 3 cut(s) 16, 34, 294
CseI GACGC 2 cut(s) 113, 437
CsiI ACCWGGT 1 cut(s) 954
Csp6I GTAC 1 cut(s) 818
CspCI CAANNNNNGTGG 2 cut(s) 1138, 1173
CviAII CATG 7 cut(s) 158, 166, 190, 316, 754, 886, 913
CviQI GTAC 1 cut(s) 818
DdeI CTNAG 6 cut(s) 123, 248, 360, 541, 631, 891
DpnI GATC 5 cut(s) 347, 393, 422, 672, 909
DpnII GATC 5 cut(s) 345, 391, 420, 670, 907
DraIII CACNNNGTG 1 cut(s) 975
EaeI YGGCCR 3 cut(s) 79, 589, 648
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 57, 912
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 945
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 16, 294
Eco47III AGCGCT 1 cut(s) 333
Eco52I CGGCCG 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 540, 813
Eco81I CCTNAGG 1 cut(s) 631
Eco91I GGTNACC 2 cut(s) 958, 1136
EcoNI CCTNNNNNAGG 1 cut(s) 1102
EcoO65I GGTNACC 2 cut(s) 958, 1136
EcoRII CCWGG 3 cut(s) 30, 514, 954
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 57, 912
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 2 cut(s) 57, 912
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 7 cut(s) 161, 169, 193, 319, 757, 889, 916
FatI CATG 7 cut(s) 157, 165, 189, 315, 753, 885, 912
Fnu4HI GCNGC 5 cut(s) 27, 79, 82, 172, 330
FokI GGATG 2 cut(s) 221, 1072
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 5 cut(s) 27, 79, 82, 172, 330
FspBI CTAG 4 cut(s) 194, 599, 939, 1195
GlaI GCGC 1 cut(s) 333
GluI GCNGC 5 cut(s) 27, 79, 82, 172, 330
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 6 cut(s) 35, 65, 81, 573, 591, 650
HapII CCGG 4 cut(s) 226, 356, 651, 799
HgaI GACGC 2 cut(s) 113, 437
HhaI GCGC 1 cut(s) 334
Hin1II CATG 7 cut(s) 161, 169, 193, 319, 757, 889, 916
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 1192
HindII GTYRAC 1 cut(s) 1192
HinfI GANTC 2 cut(s) 125, 382
HpaII CCGG 4 cut(s) 226, 356, 651, 799
HphI GGTGA 2 cut(s) 818, 1130
Hpy166II GTNNAC 4 cut(s) 313, 596, 1127, 1192
Hpy188I TCNGA 8 cut(s) 20, 381, 425, 666, 688, 739, 832, 894
Hpy188III TCNNGA 2 cut(s) 905, 1004
Hpy8I GTNNAC 4 cut(s) 313, 596, 1127, 1192
HpyAV CCTTC 2 cut(s) 145, 974
HpyCH4III ACNGT 3 cut(s) 217, 722, 822
HpyCH4IV ACGT 1 cut(s) 580
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 437, 551, 782, 1082
HpyF3I CTNAG 6 cut(s) 123, 248, 360, 541, 631, 891
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 7 cut(s) 161, 169, 193, 319, 757, 889, 916
HspAI GCGC 1 cut(s) 332
KroI GCCGGC 1 cut(s) 650
KroNI GCCGGC 1 cut(s) 652
Kzo9I GATC 5 cut(s) 345, 391, 420, 670, 907
LmnI GCTCC 2 cut(s) 372, 712
Lsp1109I GCAGC 3 cut(s) 13, 183, 341
LweI GCATC 7 cut(s) 243, 427, 574, 679, 718, 1050, 1135
MabI ACCWGGT 1 cut(s) 954
MaeI CTAG 4 cut(s) 194, 599, 939, 1195
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 6 cut(s) 97, 518, 847, 857, 958, 1136
MalI GATC 5 cut(s) 347, 393, 422, 672, 909
MboI GATC 5 cut(s) 345, 391, 420, 670, 907
MboII GAAGA 7 cut(s) 317, 455, 463, 821, 907, 1028, 1057
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 2 cut(s) 420, 907
MhlI GDGCHC 2 cut(s) 315, 542
MluCI AATT 5 cut(s) 267, 441, 467, 482, 619
MlyI GAGTC 2 cut(s) 134, 391
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 921
MseI TTAA 3 cut(s) 219, 456, 1101
MslI CAYNNNNRTG 1 cut(s) 1143
MspI CCGG 4 cut(s) 226, 356, 651, 799
MspR9I CCNGG 5 cut(s) 32, 227, 516, 799, 956
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 3 cut(s) 32, 516, 956
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 5 cut(s) 32, 437, 551, 782, 1082
NaeI GCCGGC 1 cut(s) 652
NciI CCSGG 2 cut(s) 227, 799
NcoI CCATGG 1 cut(s) 912
NdeII GATC 5 cut(s) 345, 391, 420, 670, 907
NgoMIV GCCGGC 1 cut(s) 650
NheI GCTAGC 1 cut(s) 193
NlaIII CATG 7 cut(s) 161, 169, 193, 319, 757, 889, 916
NlaIV GGNNCC 2 cut(s) 422, 1026
NmuCI GTSAC 4 cut(s) 97, 847, 857, 1136
NotI GCGGCCGC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdiI GCCGGC 1 cut(s) 652
PdmI GAANNNNTTC 1 cut(s) 921
PflFI GACNNNGTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 5 cut(s) 28, 80, 83, 173, 331
PleI GAGTC 2 cut(s) 133, 390
PpsI GAGTC 2 cut(s) 133, 390
Psp6I CCWGG 3 cut(s) 30, 514, 954
PspEI GGTNACC 2 cut(s) 958, 1136
PspGI CCWGG 3 cut(s) 30, 514, 954
PspN4I GGNNCC 2 cut(s) 422, 1026
PspPI GGNCC 3 cut(s) 16, 34, 294
PstI CTGCAG 1 cut(s) 1078
PsuI RGATCY 2 cut(s) 420, 907
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 819
RsaNI GTAC 1 cut(s) 818
RseI CAYNNNNRTG 1 cut(s) 1143
SaqAI TTAA 3 cut(s) 219, 456, 1101
SatI GCNGC 5 cut(s) 27, 79, 82, 172, 330
Sau3AI GATC 5 cut(s) 345, 391, 420, 670, 907
Sau96I GGNCC 3 cut(s) 16, 34, 294
SchI GAGTC 2 cut(s) 134, 391
ScrFI CCNGG 5 cut(s) 32, 227, 516, 799, 956
SduI GDGCHC 2 cut(s) 315, 542
SexAI ACCWGGT 1 cut(s) 954
SfaNI GCATC 7 cut(s) 243, 427, 574, 679, 718, 1050, 1135
SfcI CTRYAG 1 cut(s) 1074
SinI GGWCC 2 cut(s) 16, 294
SmiMI CAYNNNNRTG 1 cut(s) 1143
Sse9I AATT 5 cut(s) 267, 441, 467, 482, 619
SsiI CCGC 3 cut(s) 78, 82, 936
SspI AATATT 1 cut(s) 1053
SspMI CTAG 4 cut(s) 194, 599, 939, 1195
StyD4I CCNGG 5 cut(s) 30, 225, 514, 797, 954
StyI CCWWGG 2 cut(s) 57, 912
TaaI ACNGT 3 cut(s) 217, 722, 822
TaiI ACGT 1 cut(s) 583
TaqI TCGA 5 cut(s) 87, 111, 138, 385, 412
TaqII GACCGA 2 cut(s) 311, 756
TasI AATT 5 cut(s) 267, 441, 467, 482, 619
TauI GCSGC 2 cut(s) 81, 84
Tru1I TTAA 3 cut(s) 219, 456, 1101
Tru9I TTAA 3 cut(s) 219, 456, 1101
TscAI CASTG 3 cut(s) 49, 661, 738
TseFI GTSAC 4 cut(s) 97, 847, 857, 1136
TseI GCWGC 3 cut(s) 26, 171, 329
Tsp45I GTSAC 4 cut(s) 97, 847, 857, 1136
TspDTI ATGAA 2 cut(s) 332, 779
TspRI CASTG 3 cut(s) 49, 661, 738
Tth111I GACNNNGTC 1 cut(s) 107
Van91I CCANNNNNTGG 1 cut(s) 72
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 16, 294
XagI CCTNNNNNAGG 1 cut(s) 1102
XapI RAATTY 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 4 cut(s) 194, 599, 939, 1195
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.