Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015858

Physical Location & Seq

Genomic Coordinates Reverse (-)

4822676 .. 4823581

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGACAAACCTTGCAAACACAGTTCTGACCTTGAAAGGACTTAGTGTGAAAAACTTGGTACGCTTCGATCTTATAGATTCTCCTGCTCCTGATACCCTCGCTCGGGCCTTGGACGATTTGTATCATTTGGGAGCACTTGATGATGACTGTAACTTGACAAAGACAGGTGAGATGATGAGTGAGTTTCCTTTAGACCCACAGATGGCAAAGATGCTCATAGTCAGTCCTCAATTCAACTGCTCAAACGAGATTCTTTCGATTTCTGCGATGTTATCAGTACCAAATTGTTTCATCAGGCCAAGAGGAGAAGCTCAAAAAGCAGCAGATGAAGCCAAATCTAGCTTTGCACACATTGATGGAGATCATCTCACACTTTTGAATTTGTTCCATGCTTTCTTGCAAAACAACCAAGACCCAAATTGGTGCTGTACAAAGTTCATCAACTACAGAGCAATGAAGTCTGCAGTTAGTGTTAGAGAGCAGTTGGTCCGGATCATGTTGAGGTTTCAGATTAAGTTGTGTAGCCCTGATTTCAACAGCAGGGACTACTACGTCAACATAAGAAAGGCCTTGCTTGCAGGTTATTTCATGCAAGTGGCTCACCTAGAACGCACTGGCCACTACTTGACTTTCAGAGATAAGGATGACCAAGTGGTGCACTTGCATCCTTCCAATTGCTTGGATCACAAACCAGAGTGGGTAGTTTACAACGAATACGTTTTCACTAGCCGAAATTTCATCCGAACCGTCACACATATTCGCGGTGAATGGCTTGTAGATGTTGCACCACATTACTATAAGCTTGCTAACTTTCCCAGTTCTGAGGCCAAACGAGTTCTTGAAAGGCACTATAAGAAGAGAAAACTGTCAGAAGAGAGGAGTTGTAAATTGTATAGCAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

301

Amino Acids

34.74

Weight (kDa)

8.34

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_HA2	PF04408	36 - 64	4e-09	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	65 - 125	1.2e-15	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	187 - 265	1e-23	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14900
fragaria_vesca	FvH4_2g20600 FvH4_2g20610
malus_domestica	MD13G1065100.v1.1
pyrus_communis	pycom13g05740
rosa_chinensis	RchiOBHm_Chr6g0286781
rosa_laevigata	RLG00000012542
rosa_multiflora	Rmu_sc0007546.1_g000017
rosa_roxburghii	Rroxscaffold_7G00182020
rosa_rugosa	Rorug06G0182900
rosa_samantha	Rh6AG295500 Rh6BG299600 Rh6CG299400 Rh6DG291300
rosa_wichuraiana	Rw6G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	569
AccII	CGCG	1 cut(s)	762
AccIII	TCCGGA	1 cut(s)	489
AciI	CCGC	1 cut(s)	762
AclWI	GGATC	2 cut(s)	500, 690
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	379, 733
AfaI	GTAC	3 cut(s)	60, 279, 430
AfiI	CCNNNNNNNGG	3 cut(s)	102, 103, 202
AgsI	TTSAA	5 cut(s)	34, 235, 379, 535, 842
AluBI	AGCT	3 cut(s)	311, 342, 802
AluI	AGCT	3 cut(s)	311, 342, 802
Alw21I	GWGCWC	2 cut(s)	136, 660
Alw44I	GTGCAC	1 cut(s)	656
AlwI	GGATC	2 cut(s)	500, 690
Ama87I	CYCGRG	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	489
AoxI	GGCC	5 cut(s)	105, 296, 567, 616, 825
ApaLI	GTGCAC	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	379, 733
Asp700I	GAANNNNTTC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	105, 487
AsuHPI	GGTGA	3 cut(s)	179, 593, 776
AvaI	CYCGRG	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	618
Bbv12I	GWGCWC	2 cut(s)	136, 660
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	196, 350
BfaI	CTAG	3 cut(s)	339, 605, 726
BfmI	CTRYAG	2 cut(s)	445, 462
BfuAI	ACCTGC	1 cut(s)	569
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	105, 487
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	2 cut(s)	201, 673
BmuI	ACTGGG	1 cut(s)	810
BplI	GAGNNNNNCTC	2 cut(s)	351, 383
BsaBI	GATNNNNATC	2 cut(s)	120, 360
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 103, 202
Bse1I	ACTGG	2 cut(s)	619, 816
Bse3DI	GCAATG	1 cut(s)	459
Bse8I	GATNNNNATC	2 cut(s)	120, 360
BseAI	TCCGGA	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	3 cut(s)	649, 664, 738
BseJI	GATNNNNATC	2 cut(s)	120, 360
BseLI	CCNNNNNNNGG	3 cut(s)	102, 103, 202
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	813
BseNI	ACTGG	2 cut(s)	619, 816
BseRI	GAGGAG	2 cut(s)	318, 892
BseSI	GKGCMC	1 cut(s)	660
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	762
BshFI	GGCC	5 cut(s)	107, 298, 569, 618, 827
BsiHKAI	GWGCWC	2 cut(s)	136, 660
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	3 cut(s)	102, 103, 202
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	5 cut(s)	107, 298, 569, 618, 827
BsoBI	CYCGRG	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	136, 660
Bsp13I	TCCGGA	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	428
Bsp143I	GATC	4 cut(s)	67, 361, 492, 682
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	5 cut(s)	107, 298, 569, 618, 827
BspCNI	CTCAG	1 cut(s)	814
BspEI	TCCGGA	1 cut(s)	489
BspFNI	CGCG	1 cut(s)	762
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	500, 690
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	619, 816
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	67, 361, 492, 682
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	4 cut(s)	22, 149, 748, 867
Bst6I	CTCTTC	2 cut(s)	851, 867
BstAUI	TGTACA	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	576, 804
BstDEI	CTNAG	2 cut(s)	41, 822
BstF5I	GGATG	3 cut(s)	649, 664, 738
BstFNI	CGCG	1 cut(s)	762
BstKTI	GATC	4 cut(s)	70, 364, 495, 685
BstMBI	GATC	4 cut(s)	67, 361, 492, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 329, 575
BstSFI	CTRYAG	2 cut(s)	445, 462
BstSLI	GKGCMC	1 cut(s)	660
BstUI	CGCG	1 cut(s)	762
BstV1I	GCAGC	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	679
BsuRI	GGCC	5 cut(s)	107, 298, 569, 618, 827
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	3 cut(s)	649, 664, 738
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	2 cut(s)	576, 804
Cfr13I	GGNCC	2 cut(s)	105, 487
Csp6I	GTAC	3 cut(s)	59, 278, 429
CviAII	CATG	3 cut(s)	389, 496, 589
CviQI	GTAC	3 cut(s)	59, 278, 429
DdeI	CTNAG	2 cut(s)	41, 822
DpnI	GATC	4 cut(s)	69, 363, 494, 684
DpnII	GATC	4 cut(s)	67, 361, 492, 682
DrdI	GACNNNNNNGTC	1 cut(s)	551
DseDI	GACNNNNNNGTC	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	851, 867
EarI	CTCTTC	2 cut(s)	851, 867
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	392, 499, 592
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	3 cut(s)	388, 495, 588
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	3 cut(s)	651, 656, 725
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	3 cut(s)	339, 605, 726
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	5 cut(s)	107, 298, 569, 618, 827
HapII	CCGG	1 cut(s)	490
Hin1II	CATG	3 cut(s)	392, 499, 592
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	2 cut(s)	77, 250
HpaII	CCGG	1 cut(s)	490
HphI	GGTGA	3 cut(s)	179, 593, 776
Hpy166II	GTNNAC	3 cut(s)	556, 658, 706
Hpy188I	TCNGA	6 cut(s)	27, 510, 635, 743, 823, 871
Hpy188III	TCNNGA	3 cut(s)	89, 490, 839
Hpy8I	GTNNAC	3 cut(s)	556, 658, 706
HpyAV	CCTTC	1 cut(s)	678
HpyCH4III	ACNGT	4 cut(s)	22, 149, 748, 867
HpyCH4IV	ACGT	2 cut(s)	552, 717
HpyCH4V	TGCA	9 cut(s)	14, 347, 400, 464, 578, 592, 658, 664, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 329, 575
HpyF3I	CTNAG	2 cut(s)	41, 822
HpySE526I	ACGT	2 cut(s)	552, 717
Hsp92II	CATG	3 cut(s)	392, 499, 592
Kpn2I	TCCGGA	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	67, 361, 492, 682
LmnI	GCTCC	2 cut(s)	91, 131
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	201, 673
MaeI	CTAG	3 cut(s)	339, 605, 726
MaeII	ACGT	2 cut(s)	552, 717
MaeIII	GTNAC	2 cut(s)	149, 748
MalI	GATC	4 cut(s)	69, 363, 494, 684
MboI	GATC	4 cut(s)	67, 361, 492, 682
MboII	GAAGA	2 cut(s)	868, 884
MfeI	CAATTG	1 cut(s)	673
MhlI	GDGCHC	2 cut(s)	136, 660
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	8 cut(s)	230, 283, 379, 418, 673, 733, 887, 898
MluNI	TGGCCA	1 cut(s)	618
MnlI	CCTC	6 cut(s)	107, 237, 296, 495, 817, 870
Mox20I	TGGCCA	1 cut(s)	618
MroI	TCCGGA	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	2 cut(s)	513, 904
MslI	CAYNNNNRTG	2 cut(s)	354, 593
Msp20I	TGGCCA	1 cut(s)	618
MspI	CCGG	1 cut(s)	490
MunI	CAATTG	1 cut(s)	673
MvnI	CGCG	1 cut(s)	762
MwoI	GCNNNNNNNGC	3 cut(s)	317, 329, 575
NdeII	GATC	4 cut(s)	67, 361, 492, 682
NlaIII	CATG	3 cut(s)	392, 499, 592
NmuCI	GTSAC	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	77, 250
PkrI	GCNGC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	105, 487
PstI	CTGCAG	1 cut(s)	466
RsaI	GTAC	3 cut(s)	60, 279, 430
RsaNI	GTAC	3 cut(s)	59, 278, 429
RseI	CAYNNNNRTG	2 cut(s)	354, 593
SaqAI	TTAA	2 cut(s)	513, 904
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	67, 361, 492, 682
Sau96I	GGNCC	2 cut(s)	105, 487
SduI	GDGCHC	2 cut(s)	136, 660
SfaNI	GCATC	2 cut(s)	201, 673
SfcI	CTRYAG	2 cut(s)	445, 462
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	2 cut(s)	354, 593
Sse9I	AATT	8 cut(s)	230, 283, 379, 418, 673, 733, 887, 898
SseBI	AGGCCT	1 cut(s)	569
SsiI	CCGC	1 cut(s)	762
SspMI	CTAG	3 cut(s)	339, 605, 726
StuI	AGGCCT	1 cut(s)	569
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	4 cut(s)	22, 149, 748, 867
TaiI	ACGT	2 cut(s)	555, 720
TaqI	TCGA	2 cut(s)	66, 257
TasI	AATT	8 cut(s)	230, 283, 379, 418, 673, 733, 887, 898
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	77, 250
Tru1I	TTAA	2 cut(s)	513, 904
Tru9I	TTAA	2 cut(s)	513, 904
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	6 cut(s)	280, 342, 427, 470, 577, 727
TspRI	CASTG	1 cut(s)	619
VneI	GTGCAC	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	379, 733
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	3 cut(s)	339, 605, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.