Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015858

Physical Location & Seq

Genomic Coordinates Forward (+)

4531667 .. 4532596

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1065100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAACGTGCCGGGGGAACCCGGCCCGGGAAATGTTTCAGACTTTACACTGAGAATAGTTTCCGCAACCATCTTCAAAGACGCACAGACAGAAATTTGTAGGTCGAAATTTGCTTCGGCAGCTCTTACTTTGAGGAAAATAGTTATCACGGATCTGATGCTAGTTGATTTTGTGGAGACTCCTCATCCCGAGCGAATGATGGAAGAGGTAGAGATCTTGAAGCGTCTGGGAGCAATGGATGACGAATACCGCTGGACCAAGCTGGGGGAGATTATGAGCGAGTTCCCCTTAGATCCTCAGCTGTCGAAGATGCTTATTGTTAGCCCTCAACTCAATTGCTCAAATGAGATTTTGTCCATTTGTGCCATGCTTTCAGTACCGTTGAGTCCCTTTGTTCAGCCTCGGGAGGAGGCTCAAAAATCGGCTGCGCTGCTGAGAAAAGCAAGGTTTATCCATGTCGATGGAGATCACCTCACGCTGCTGAATGTGTATCGTGCTGACAAGGAAAACAACGAGGATCCATCCTGGTGCGAGCTCAACTTTGTCAATCACGCAGCATTGAAGGCTGCAGACAACATGAGGCGGCAGTTAGCGAGCATTATGGCTCGTTGTGATCTCAAGTTATTTAGCATTAGTACTACTAGTCCTGACTACTCTGTCAACATCAAGAGGGCCATGTTAGCCGGATATTCGTTTCAGGTAGCTCACCTACAATGCACATCCGGCAGTGGTTCCGGGCACTATCTGACAGGAGCCATGGATAAGGTACACTTGCATCCCTCCAGTTGCTTGGGTCACAAGGCAGAGTGGGTGATTTTCAATGACTGTTGCGTTGTGGAAACCAAGAAGTTTGTCCGCACAGTGACCCAGATTCCCGGTGAATGGCTCGTTGCTGGTGTACAGAACCTGGCCGGTTCTGAAGTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

310

Amino Acids

34.4

Weight (kDa)

6.0

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HA2_C	PF21010	98 - 160	2.7e-14	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	222 - 299	2.7e-12	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14900
fragaria_vesca	FvH4_2g20600 FvH4_2g20610
malus_domestica	MD13G1065100.v1.1
pyrus_communis	pycom13g05740
rosa_chinensis	RchiOBHm_Chr6g0286781
rosa_laevigata	RLG00000012542
rosa_multiflora	Rmu_sc0007546.1_g000017
rosa_roxburghii	Rroxscaffold_7G00182020
rosa_rugosa	Rorug06G0182900
rosa_samantha	Rh6AG295500 Rh6BG299600 Rh6CG299400 Rh6DG291300
rosa_wichuraiana	Rw6G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	656
AciI	CCGC	4 cut(s)	63, 250, 583, 856
AclWI	GGATC	4 cut(s)	159, 287, 512, 525
AcoI	YGGCCR	1 cut(s)	909
AcsI	RAATTY	2 cut(s)	93, 107
AfaI	GTAC	4 cut(s)	378, 637, 768, 900
AfiI	CCNNNNNNNGG	3 cut(s)	26, 264, 882
AgsI	TTSAA	4 cut(s)	76, 220, 562, 820
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	2 cut(s)	524, 906
AluBI	AGCT	5 cut(s)	122, 262, 301, 535, 704
AluI	AGCT	5 cut(s)	122, 262, 301, 535, 704
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	4 cut(s)	159, 287, 512, 525
AlwNI	CAGNNNCTG	1 cut(s)	907
Ama87I	CYCGRG	3 cut(s)	25, 188, 402
AoxI	GGCC	3 cut(s)	22, 672, 909
ApeKI	GCWGC	6 cut(s)	119, 425, 430, 478, 554, 566
ApoI	RAATTY	2 cut(s)	93, 107
Asp700I	GAANNNNTTC	2 cut(s)	34, 58
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	3 cut(s)	23, 255, 672
AsuC2I	CCSGG	6 cut(s)	12, 21, 26, 27, 736, 876
AsuHPI	GGTGA	4 cut(s)	461, 698, 823, 890
AvaI	CYCGRG	3 cut(s)	25, 188, 402
AvaII	GGWCC	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	741
BamHI	GGATCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	6 cut(s)	131, 412, 417, 465, 553, 566
BccI	CCATC	4 cut(s)	77, 193, 455, 529
BciT130I	CCWGG	2 cut(s)	526, 908
BcnI	CCSGG	6 cut(s)	12, 21, 26, 27, 736, 876
BcoDI	GTCTC	1 cut(s)	170
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	2 cut(s)	161, 642
BfmI	CTRYAG	1 cut(s)	567
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	7 cut(s)	120, 426, 431, 479, 555, 567, 584
BlsI	GCNGC	7 cut(s)	121, 427, 432, 480, 556, 568, 585
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	8 cut(s)	12, 21, 26, 27, 526, 736, 876, 908
Bme18I	GGWCC	1 cut(s)	255
BmeT110I	CYCGRG	3 cut(s)	25, 188, 402
BmgT120I	GGNCC	3 cut(s)	23, 255, 672
BmiI	GGNNCC	4 cut(s)	18, 519, 733, 754
BmrFI	CCNGG	8 cut(s)	12, 21, 26, 27, 526, 736, 876, 908
BmsI	GCATC	3 cut(s)	147, 300, 784
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
BpmI	CTGGAG	1 cut(s)	766
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	6 cut(s)	12, 21, 26, 27, 736, 876
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	4 cut(s)	11, 25, 401, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 264, 882
Bse118I	RCCGGY	1 cut(s)	911
Bse1I	ACTGG	1 cut(s)	783
Bse3DI	GCAATG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	526, 908
BseDI	CCNNGG	4 cut(s)	11, 25, 401, 756
BseGI	GGATG	5 cut(s)	184, 244, 521, 719, 775
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	26, 264, 882
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	3 cut(s)	41, 311, 425
BseNI	ACTGG	1 cut(s)	783
BseRI	GAGGAG	2 cut(s)	171, 422
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	6 cut(s)	131, 412, 417, 465, 553, 566
BseYI	CCCAGC	1 cut(s)	262
BshFI	GGCC	3 cut(s)	24, 674, 911
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	3 cut(s)	25, 188, 402
BsiSI	CCGG	8 cut(s)	11, 21, 26, 684, 723, 735, 876, 912
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	3 cut(s)	26, 264, 882
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	3 cut(s)	24, 674, 911
BsoBI	CYCGRG	3 cut(s)	25, 188, 402
Bsp1286I	GDGCHC	2 cut(s)	537, 741
Bsp1407I	TGTACA	1 cut(s)	898
Bsp143I	GATC	6 cut(s)	151, 213, 292, 466, 517, 613
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	4 cut(s)	63, 250, 583, 856
BspANI	GGCC	3 cut(s)	24, 674, 911
BspCNI	CTCAG	3 cut(s)	42, 310, 426
BspLI	GGNNCC	4 cut(s)	18, 519, 733, 754
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	4 cut(s)	159, 287, 512, 525
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	911
BsrGI	TGTACA	1 cut(s)	898
BsrI	ACTGG	1 cut(s)	783
BssAI	RCCGGY	1 cut(s)	911
BssECI	CCNNGG	4 cut(s)	11, 25, 401, 756
BssMI	GATC	6 cut(s)	151, 213, 292, 466, 517, 613
BssT1I	CCWWGG	1 cut(s)	756
Bst2UI	CCWGG	2 cut(s)	526, 908
Bst4CI	ACNGT	3 cut(s)	381, 827, 862
Bst6I	CTCTTC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	898
BstC8I	GCNNGC	2 cut(s)	533, 595
BstDEI	CTNAG	4 cut(s)	50, 289, 297, 434
BstDSI	CCRYGG	1 cut(s)	756
BstF5I	GGATG	5 cut(s)	184, 244, 521, 719, 775
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	6 cut(s)	154, 216, 295, 469, 520, 616
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	6 cut(s)	151, 213, 292, 466, 517, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 563, 680, 723
BstNI	CCWGG	2 cut(s)	526, 908
BstSCI	CCNGG	8 cut(s)	10, 19, 24, 25, 524, 734, 874, 906
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	741
BstV1I	GCAGC	6 cut(s)	131, 412, 417, 465, 553, 566
BstX2I	RGATCY	4 cut(s)	151, 213, 292, 517
BstXI	CCANNNNNNTGG	2 cut(s)	461, 790
BstYI	RGATCY	4 cut(s)	151, 213, 292, 517
BsuRI	GGCC	3 cut(s)	24, 674, 911
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	5 cut(s)	184, 244, 521, 719, 775
BtsI	GCAGTG	1 cut(s)	733
BtsIMutI	CAGTG	3 cut(s)	47, 733, 867
Cac8I	GCNNGC	2 cut(s)	533, 595
CaiI	CAGNNNCTG	1 cut(s)	907
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	911
Cfr13I	GGNCC	3 cut(s)	23, 255, 672
Cfr9I	CCCGGG	1 cut(s)	25
CseI	GACGC	2 cut(s)	89, 212
Csp6I	GTAC	4 cut(s)	377, 636, 767, 899
CviAII	CATG	5 cut(s)	367, 455, 577, 676, 757
CviQI	GTAC	4 cut(s)	377, 636, 767, 899
DdeI	CTNAG	4 cut(s)	50, 289, 297, 434
DpnI	GATC	6 cut(s)	153, 215, 294, 468, 519, 615
DpnII	GATC	6 cut(s)	151, 213, 292, 466, 517, 613
DrdI	GACNNNNNNGTC	1 cut(s)	656
DseDI	GACNNNNNNGTC	1 cut(s)	656
EaeI	YGGCCR	1 cut(s)	909
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	535
Eco88I	CYCGRG	3 cut(s)	25, 188, 402
EcoICRI	GAGCTC	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	524, 906
EcoT14I	CCWWGG	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	5 cut(s)	370, 458, 580, 679, 760
FaiI	YATR	7 cut(s)	275, 368, 456, 578, 602, 677, 758
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	5 cut(s)	366, 454, 576, 675, 756
Fnu4HI	GCNGC	7 cut(s)	120, 426, 431, 479, 555, 567, 584
FokI	GGATG	5 cut(s)	171, 251, 508, 706, 762
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	7 cut(s)	120, 426, 431, 479, 555, 567, 584
FspBI	CTAG	2 cut(s)	161, 642
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	7 cut(s)	120, 426, 431, 479, 555, 567, 584
GsaI	CCCAGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	3 cut(s)	24, 674, 911
HapII	CCGG	8 cut(s)	11, 21, 26, 684, 723, 735, 876, 912
HgaI	GACGC	2 cut(s)	89, 212
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	5 cut(s)	370, 458, 580, 679, 760
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	3 cut(s)	178, 385, 871
HpaII	CCGG	8 cut(s)	11, 21, 26, 684, 723, 735, 876, 912
HphI	GGTGA	4 cut(s)	461, 698, 823, 890
Hpy166II	GTNNAC	3 cut(s)	661, 769, 899
Hpy188I	TCNGA	4 cut(s)	40, 156, 747, 919
Hpy188III	TCNNGA	5 cut(s)	188, 217, 404, 647, 667
Hpy8I	GTNNAC	3 cut(s)	661, 769, 899
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	3 cut(s)	381, 827, 862
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	569, 717, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 563, 680, 723
HpyF3I	CTNAG	4 cut(s)	50, 289, 297, 434
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	5 cut(s)	370, 458, 580, 679, 760
HspAI	GCGC	1 cut(s)	428
Kzo9I	GATC	6 cut(s)	151, 213, 292, 466, 517, 613
LmnI	GCTCC	2 cut(s)	230, 752
Lsp1109I	GCAGC	6 cut(s)	131, 412, 417, 465, 553, 566
LweI	GCATC	3 cut(s)	147, 300, 784
MaeI	CTAG	2 cut(s)	161, 642
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	794, 862
MalI	GATC	6 cut(s)	153, 215, 294, 468, 519, 615
MboI	GATC	6 cut(s)	151, 213, 292, 466, 517, 613
MboII	GAAGA	3 cut(s)	64, 215, 319
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	4 cut(s)	151, 213, 292, 517
MhlI	GDGCHC	2 cut(s)	537, 741
MluCI	AATT	3 cut(s)	93, 107, 334
MlyI	GAGTC	2 cut(s)	172, 394
MroXI	GAANNNNTTC	2 cut(s)	34, 58
MslI	CAYNNNNRTG	2 cut(s)	459, 526
MspA1I	CMGCKG	2 cut(s)	252, 301
MspI	CCGG	8 cut(s)	11, 21, 26, 684, 723, 735, 876, 912
MspR9I	CCNGG	8 cut(s)	12, 21, 26, 27, 526, 736, 876, 908
MunI	CAATTG	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	526, 908
MwoI	GCNNNNNNNGC	4 cut(s)	119, 563, 680, 723
NciI	CCSGG	6 cut(s)	12, 21, 26, 27, 736, 876
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	6 cut(s)	151, 213, 292, 466, 517, 613
NlaIII	CATG	5 cut(s)	370, 458, 580, 679, 760
NlaIV	GGNNCC	4 cut(s)	18, 519, 733, 754
NmuCI	GTSAC	2 cut(s)	794, 862
PdmI	GAANNNNTTC	2 cut(s)	34, 58
PfeI	GAWTC	1 cut(s)	871
PkrI	GCNGC	7 cut(s)	121, 427, 432, 480, 556, 568, 585
PleI	GAGTC	2 cut(s)	172, 393
PpsI	GAGTC	2 cut(s)	172, 393
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	2 cut(s)	524, 906
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	2 cut(s)	524, 906
PspN4I	GGNNCC	4 cut(s)	18, 519, 733, 754
PspPI	GGNCC	3 cut(s)	23, 255, 672
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	4 cut(s)	151, 213, 292, 517
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	4 cut(s)	378, 637, 768, 900
RsaNI	GTAC	4 cut(s)	377, 636, 767, 899
RseI	CAYNNNNRTG	2 cut(s)	459, 526
SacI	GAGCTC	1 cut(s)	537
SatI	GCNGC	7 cut(s)	120, 426, 431, 479, 555, 567, 584
Sau3AI	GATC	6 cut(s)	151, 213, 292, 466, 517, 613
Sau96I	GGNCC	3 cut(s)	23, 255, 672
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	2 cut(s)	172, 394
ScrFI	CCNGG	8 cut(s)	12, 21, 26, 27, 526, 736, 876, 908
SduI	GDGCHC	2 cut(s)	537, 741
SfaNI	GCATC	3 cut(s)	147, 300, 784
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	255
SmaI	CCCGGG	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	459, 526
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	3 cut(s)	93, 107, 334
SsiI	CCGC	4 cut(s)	63, 250, 583, 856
SspMI	CTAG	2 cut(s)	161, 642
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	8 cut(s)	10, 19, 24, 25, 524, 734, 874, 906
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	3 cut(s)	381, 827, 862
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	104, 305, 459
TasI	AATT	3 cut(s)	93, 107, 334
TatI	WGTACW	2 cut(s)	635, 898
TauI	GCSGC	1 cut(s)	586
TfiI	GAWTC	1 cut(s)	871
TscAI	CASTG	3 cut(s)	54, 733, 867
TseFI	GTSAC	2 cut(s)	794, 862
TseI	GCWGC	6 cut(s)	119, 425, 430, 478, 554, 566
Tsp45I	GTSAC	2 cut(s)	794, 862
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	164
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	3 cut(s)	54, 733, 867
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	2 cut(s)	93, 107
XmaI	CCCGGG	1 cut(s)	25
XmnI	GAANNNNTTC	2 cut(s)	34, 58
XspI	CTAG	2 cut(s)	161, 642
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.