AT5G16060

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014348
Physical Location & Seq
Forward (+)
5246080 .. 5247442
1363 bp
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UTR
Exon/CDS
Intron
AT5G16060.1

Sequence Viewer

Length: 288 bp
ATGGGTAGCTATGTGGAGCAAGCTCGTGAAAATCACGTGAAGAAGAAGGTCGAAGAAGCGCTGCGTAGCAAGATGAAGGCAAAGGCATTAATGGAATGTGATCAGTACGTCTCCAAGTATGCTCAATGCGCAACAGGAAGAACTTTTTCTGTGGTATGGACATGTCGTAAGCAAGCTAGGGAGCTCAACACTTGCCTCCATCAATTCACCAATGACAATGTCTTGGAGGAAATGAAGAGAGCGTATATGGTTCAAGAAGAGGGTAAAGTCTCAGCCTCGGCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

95

Amino Acids

10.94

Weight (kDa)

8.95

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 22 - 86 3.5e-17 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16060
fragaria_vesca FvH4_6g45250
malus_domestica MD07G1095900.v1.1 MD17G1105000.v1.1
prunus_persica Prupe.3G238900_v2.0.a1 Prupe.3G238900_v2.0.a1
pyrus_communis pycom09g01120 pycom17g07570
rosa_chinensis RchiOBHm_Chr2g0162971
rosa_multiflora Rmu_sc0011038.1_g000003
rosa_roxburghii Rroxscaffold_2G00087650
rosa_rugosa Rorug02G0499600
rosa_samantha Rh2AG565800 Rh2BG578400 Rh2CG548200 Rh2DG588600
rosa_wichuraiana Rw2G046850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 279
AcvI CACGTG 1 cut(s) 37
AfaI GTAC 1 cut(s) 107
AfeI AGCGCT 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 1 cut(s) 254
AluBI AGCT 4 cut(s) 9, 23, 176, 184
AluI AGCT 4 cut(s) 9, 23, 176, 184
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 115, 274
Aor51HI AGCGCT 1 cut(s) 60
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 61
AseI ATTAAT 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 2 cut(s) 61, 131
AsuHPI GGTGA 1 cut(s) 199
BanII GRGCYC 1 cut(s) 186
BauI CACGAG 1 cut(s) 24
BbrPI CACGTG 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 207
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 115, 274
BfaI CTAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 115, 274
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 100
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 230, 252
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 21, 174
BstDEI CTNAG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 2 cut(s) 61, 131
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 115, 274
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 21, 174
CfoI GCGC 2 cut(s) 61, 131
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 162
CviJI RGCY 6 cut(s) 9, 23, 176, 184, 275, 281
CviKI_1 RGCY 6 cut(s) 9, 23, 176, 184, 275, 281
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 271
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 230, 252
EarI CTCTTC 2 cut(s) 230, 252
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 184
Eco72I CACGTG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 165
FaiI YATR 8 cut(s) 12, 120, 157, 163, 246, 248, 284, 286
FatI CATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 177
FspI TGCGCA 1 cut(s) 130
GlaI GCGC 2 cut(s) 60, 130
GluI GCNGC 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 281
HhaI GCGC 2 cut(s) 61, 131
Hin1II CATG 1 cut(s) 165
Hin6I GCGC 2 cut(s) 59, 129
HinP1I GCGC 2 cut(s) 59, 129
HphI GGTGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 26, 254
HpyAV CCTTC 2 cut(s) 40, 70
HpyCH4IV ACGT 2 cut(s) 36, 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 2 cut(s) 36, 108
Hsp92II CATG 1 cut(s) 165
HspAI GCGC 2 cut(s) 59, 129
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 16, 181
LpnPI CCDG 1 cut(s) 120
Lsp1109I GCAGC 1 cut(s) 48
MaeI CTAG 1 cut(s) 177
MaeII ACGT 2 cut(s) 36, 108
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 6 cut(s) 52, 55, 65, 150, 247, 269
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 1 cut(s) 203
MnlI CCTC 4 cut(s) 206, 220, 253, 286
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 257
NsbI TGCGCA 1 cut(s) 130
NspI RCATGY 1 cut(s) 165
PciI ACATGT 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 63
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 37
PscI ACATGT 1 cut(s) 161
PshBI ATTAAT 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 186
PspCI CACGTG 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 186
SetI ASST 7 cut(s) 11, 25, 39, 51, 111, 178, 186
Sse9I AATT 1 cut(s) 203
SspMI CTAG 1 cut(s) 177
SstI GAGCTC 1 cut(s) 186
TaiI ACGT 2 cut(s) 39, 111
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 203
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 89, 248
Tth111I GACNNNGTC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 89
XceI RCATGY 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.