FvH4_6g45250

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014348
Physical Location & Seq
Reverse (-)
34774640 .. 34777530
2891 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45250.t1

Sequence Viewer

Length: 300 bp
ATGGGGTACATACAGGAAGCACGTGAGAATCACGTGAAGAAGAAGGTAGAAGAAGCGCTGAGGAGCAAAATGAAGCAGAAGGCGATGAAGGAGTGTAAGGATTACGCGTCCAAATACGCAGAGTGCTCTACGGGAAGAACCATCTCCGTTGTTTGGCAGTGTCGCCAAGAAGCCAAGGAACTGAACAATTGCCTTCACCAATTTACTAATGATGATGTCTTGGAGCAAATGAAAAAAGATTACATGCTTCAACAGGAGCAGAAGGGGTCTACCAGAAGTCTAAATCCATCCTCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

100

Amino Acids

11.58

Weight (kDa)

8.9

Isoelectric Point (pI)

63.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 21 - 84 7e-15 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16060
fragaria_vesca FvH4_6g45250
malus_domestica MD07G1095900.v1.1 MD17G1105000.v1.1
prunus_persica Prupe.3G238900_v2.0.a1 Prupe.3G238900_v2.0.a1
pyrus_communis pycom09g01120 pycom17g07570
rosa_chinensis RchiOBHm_Chr2g0162971
rosa_multiflora Rmu_sc0011038.1_g000003
rosa_roxburghii Rroxscaffold_2G00087650
rosa_rugosa Rorug02G0499600
rosa_samantha Rh2AG565800 Rh2BG578400 Rh2CG548200 Rh2DG588600
rosa_wichuraiana Rw2G046850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 269
AccII CGCG 1 cut(s) 107
AcvI CACGTG 2 cut(s) 23, 34
AfaI GTAC 1 cut(s) 8
AfeI AGCGCT 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 153
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 251
Alw21I GWGCWC 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 57
AspLEI GCGC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 188
BbrPI CACGTG 2 cut(s) 23, 34
Bbv12I GWGCWC 1 cut(s) 128
BbvCI CCTCAGC 1 cut(s) 59
BccI CCATC 2 cut(s) 149, 295
BfoI RGCGCY 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 59
BsaAI YACGTR 2 cut(s) 23, 34
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 174
BstBAI YACGTR 2 cut(s) 23, 34
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 247
BstUI CGCG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 58
CseI GACGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 244
CviJI RGCY 1 cut(s) 173
CviKI_1 RGCY 1 cut(s) 173
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 174
Eco47III AGCGCT 1 cut(s) 57
Eco72I CACGTG 2 cut(s) 23, 34
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 247
FaiI YATR 4 cut(s) 11, 245, 296, 298
FatI CATG 1 cut(s) 243
FblI GTMKAC 1 cut(s) 269
FokI GGATG 1 cut(s) 274
GlaI GCGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 59
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 28
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 5 cut(s) 37, 73, 82, 203, 256
HpyCH4IV ACGT 2 cut(s) 22, 33
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 2 cut(s) 22, 33
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 1 cut(s) 56
LmnI GCTCC 3 cut(s) 63, 223, 256
LpnPI CCDG 2 cut(s) 239, 286
MaeII ACGT 2 cut(s) 22, 33
MboII GAAGA 4 cut(s) 49, 52, 62, 147
MfeI CAATTG 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 2 cut(s) 187, 200
MluI ACGCGT 1 cut(s) 105
MnlI CCTC 1 cut(s) 54
MunI CAATTG 1 cut(s) 187
MvnI CGCG 1 cut(s) 107
NlaIII CATG 1 cut(s) 247
NspI RCATGY 1 cut(s) 247
PfeI GAWTC 1 cut(s) 28
PmaCI CACGTG 2 cut(s) 23, 34
PmlI CACGTG 2 cut(s) 23, 34
Ppu21I YACGTR 2 cut(s) 23, 34
PspCI CACGTG 2 cut(s) 23, 34
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SduI GDGCHC 1 cut(s) 128
SetI ASST 3 cut(s) 25, 36, 48
Sse9I AATT 2 cut(s) 187, 200
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 2 cut(s) 25, 36
TasI AATT 2 cut(s) 187, 200
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 86, 101, 245
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 1 cut(s) 164
XceI RCATGY 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.