Rorug02G0499600

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009064
Physical Location & Seq
Forward (+)
63183547 .. 63185446
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0499600.1

Sequence Viewer

Length: 999 bp
ATGGAAAGCCTTTTTAAGATTTTTGTCTATGAAGAGGGAGAGCCTCCAATATTCCACAATGGTCCTTGCAAGAACATATACTCTATGGAAGGACTCTTTCTCAGCTTCATGGAAACTGATACCAAATTCCGAACTTTGGATCCAGAAAAAGCTCATGTCTATTTCCTTCCTTTTAGTGTGGTGATGATCATTGAGTACCTCTTTCATCCAATTATTCGAGACAAAGCTGTTTTACAACGCACCGTGGTTGATTATGTTCGAGTCATATCCAACAAGTACCCATTTTGGAATAGAAGCCTTGGGGCTGATCATGTAGTGCTTTCTTGCCATGATTGGGGGCCAAGGGCGACATGGTATGTTCGACAGCTATACTTTGTTGCCATTCGTGTACTATGCAATGCGAACACCTCCGAGCACTTCAACCCTAAGAAAGATGCATCATTCCCCGAAATCAATCTTAAAACAGGTGAAATTACAGGTTTAATTGGAGGCTTCCCCCCCTCCAAGCGTTCTATCCTAGCCTTCTTTGCAGGACGAATGCATGGACGAATCAGACCATTGCTTTTCCAACACTGGAAAGAAAAAGATAAAGATCTACTGGTTTATGAAACACTCCCCGAGAAATTTTCGTACCATGACATGTTGAAGAAAAGCAAGTATTGCATTTGCCCAAGCGGTCATGAAGTCGCTAGTCCAAGGATCGTAGAGGCAATTTATGCAGAGTGTGTTCCAGTTTTGATTTCACAGCATTATGTTCTGCCTTTCAGTGATGTTCTAGATTGGGAGTCCTTTTCTATTCAAGTATCTGTGAGTGAAATATCACAACTTAAGGAAATCTTAATGGGGATTCCTGAAGAGAAGTATAGAAGAATGCAGGAAAGAGTGAAACAAGTGCAAAGGCATTTTGTGGTGAACAATCCCCCCAAGAGATTTGATGTTTTTCATATGATAATTCATTCAATATGGCTTAGGAGACTTAATGTACGCATTTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

332

Amino Acids

39.04

Weight (kDa)

8.87

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 2 - 281 9.1e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 675
AclWI GGATC 3 cut(s) 134, 147, 707
AcsI RAATTY 2 cut(s) 125, 623
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 5 cut(s) 197, 278, 390, 632, 984
AfiI CCNNNNNNNGG 2 cut(s) 136, 334
AflII CTTAAG 1 cut(s) 827
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 4 cut(s) 421, 646, 800, 960
AloI GAACNNNNNNTCC 2 cut(s) 124, 156
AluBI AGCT 4 cut(s) 105, 152, 227, 367
AluI AGCT 4 cut(s) 105, 152, 227, 367
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 2 cut(s) 213, 967
AlwI GGATC 3 cut(s) 134, 147, 707
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 125, 623
AspS9I GGNCC 2 cut(s) 62, 338
AsuHPI GGTGA 3 cut(s) 193, 479, 922
AvaI CYCGRG 1 cut(s) 617
AvaII GGWCC 1 cut(s) 62
BamHI GGATCC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 417
BclI TGATCA 2 cut(s) 186, 307
BcoDI GTCTC 2 cut(s) 213, 967
BfaI CTAG 3 cut(s) 518, 690, 776
BfrI CTTAAG 1 cut(s) 827
BglII AGATCT 1 cut(s) 592
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 62, 338
BmiI GGNNCC 2 cut(s) 141, 339
BmsI GCATC 2 cut(s) 424, 446
Bpu10I CCTNAGC 1 cut(s) 968
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 4 cut(s) 243, 298, 341, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 334
Bse1I ACTGG 3 cut(s) 578, 603, 731
Bse3DI GCAATG 2 cut(s) 403, 557
Bse8I GATNNNNATC 1 cut(s) 591
BseDI CCNNGG 4 cut(s) 243, 298, 341, 695
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 2 cut(s) 136, 334
BseMI GCAATG 2 cut(s) 403, 557
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 3 cut(s) 578, 603, 731
BshFI GGCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 1 cut(s) 617
BslI CCNNNNNNNGG 2 cut(s) 136, 334
BsmAI GTCTC 2 cut(s) 213, 967
BsmI GAATGC 2 cut(s) 543, 876
BsnI GGCC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 5 cut(s) 139, 186, 307, 592, 699
BspACI CCGC 1 cut(s) 675
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 141, 339
BspPI GGATC 3 cut(s) 134, 147, 707
BspTI CTTAAG 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 403, 557
BsrI ACTGG 3 cut(s) 578, 603, 731
BssECI CCNNGG 4 cut(s) 243, 298, 341, 695
BssMI GATC 5 cut(s) 139, 186, 307, 592, 699
BssT1I CCWWGG 3 cut(s) 298, 341, 695
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 27, 849
BstAFI CTTAAG 1 cut(s) 827
BstAPI GCANNNNNTGC 2 cut(s) 660, 716
BstDEI CTNAG 3 cut(s) 101, 426, 968
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 5 cut(s) 142, 189, 310, 595, 702
BstMAI GTCTC 2 cut(s) 213, 967
BstMBI GATC 5 cut(s) 139, 186, 307, 592, 699
BstMWI GCNNNNNNNGC 3 cut(s) 527, 660, 716
BstNSI RCATGY 1 cut(s) 643
BstX2I RGATCY 2 cut(s) 139, 592
BstYI RGATCY 2 cut(s) 139, 592
BsuRI GGCC 1 cut(s) 340
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 571, 772
CciI TCATGA 1 cut(s) 679
Cfr13I GGNCC 2 cut(s) 62, 338
Csp6I GTAC 5 cut(s) 196, 277, 389, 631, 983
CviAII CATG 9 cut(s) 109, 155, 311, 329, 351, 542, 635, 640, 680
CviQI GTAC 5 cut(s) 196, 277, 389, 631, 983
DdeI CTNAG 3 cut(s) 101, 426, 968
DpnI GATC 5 cut(s) 141, 188, 309, 594, 701
DpnII GATC 5 cut(s) 139, 186, 307, 592, 699
Eam1104I CTCTTC 2 cut(s) 27, 849
EarI CTCTTC 2 cut(s) 27, 849
Eco130I CCWWGG 3 cut(s) 298, 341, 695
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 617
EcoT14I CCWWGG 3 cut(s) 298, 341, 695
EcoT22I ATGCAT 2 cut(s) 439, 543
ErhI CCWWGG 3 cut(s) 298, 341, 695
FaeI CATG 9 cut(s) 112, 158, 314, 332, 354, 545, 638, 643, 683
FalI AAGNNNNNCTT 2 cut(s) 821, 853
FatI CATG 9 cut(s) 108, 154, 310, 328, 350, 541, 634, 639, 679
FauNDI CATATG 1 cut(s) 945
FbaI TGATCA 2 cut(s) 186, 307
FokI GGATG 1 cut(s) 192
FspBI CTAG 3 cut(s) 518, 690, 776
HaeIII GGCC 1 cut(s) 340
Hin1II CATG 9 cut(s) 112, 158, 314, 332, 354, 545, 638, 643, 683
HinfI GANTC 5 cut(s) 93, 261, 549, 785, 847
HphI GGTGA 3 cut(s) 193, 479, 922
Hpy166II GTNNAC 2 cut(s) 389, 913
Hpy188I TCNGA 3 cut(s) 131, 412, 554
Hpy188III TCNNGA 5 cut(s) 143, 218, 680, 776, 851
Hpy8I GTNNAC 2 cut(s) 389, 913
HpyAV CCTTC 3 cut(s) 83, 176, 532
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 9 cut(s) 69, 396, 437, 530, 541, 663, 719, 874, 895
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 660, 716
HpyF3I CTNAG 3 cut(s) 101, 426, 968
Hsp92II CATG 9 cut(s) 112, 158, 314, 332, 354, 545, 638, 643, 683
Ksp22I TGATCA 2 cut(s) 186, 307
Kzo9I GATC 5 cut(s) 139, 186, 307, 592, 699
LpnPI CCDG 9 cut(s) 156, 450, 462, 516, 559, 584, 744, 860, 864
LweI GCATC 2 cut(s) 424, 446
MaeI CTAG 3 cut(s) 518, 690, 776
MalI GATC 5 cut(s) 141, 188, 309, 594, 701
MboI GATC 5 cut(s) 139, 186, 307, 592, 699
MboII GAAGA 4 cut(s) 44, 658, 866, 879
MflI RGATCY 2 cut(s) 139, 592
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 7 cut(s) 125, 210, 471, 483, 623, 711, 951
MlyI GAGTC 3 cut(s) 87, 270, 794
MmeI TCCRAC 2 cut(s) 294, 592
MnlI CCTC 7 cut(s) 28, 54, 209, 418, 482, 511, 700
Mph1103I ATGCAT 2 cut(s) 439, 543
MseI TTAA 6 cut(s) 15, 459, 482, 828, 839, 978
MspCI CTTAAG 1 cut(s) 827
Mva1269I GAATGC 2 cut(s) 543, 876
MwoI GCNNNNNNNGC 3 cut(s) 527, 660, 716
NdeI CATATG 1 cut(s) 945
NdeII GATC 5 cut(s) 139, 186, 307, 592, 699
NlaIII CATG 9 cut(s) 112, 158, 314, 332, 354, 545, 638, 643, 683
NlaIV GGNNCC 2 cut(s) 141, 339
NsiI ATGCAT 2 cut(s) 439, 543
NspI RCATGY 1 cut(s) 643
PagI TCATGA 1 cut(s) 679
PciI ACATGT 1 cut(s) 639
PctI GAATGC 2 cut(s) 543, 876
PfeI GAWTC 2 cut(s) 549, 847
PleI GAGTC 3 cut(s) 87, 269, 793
PpsI GAGTC 3 cut(s) 87, 269, 793
PscI ACATGT 1 cut(s) 639
PspN4I GGNNCC 2 cut(s) 141, 339
PspPI GGNCC 2 cut(s) 62, 338
PsuI RGATCY 2 cut(s) 139, 592
RsaI GTAC 5 cut(s) 197, 278, 390, 632, 984
RsaNI GTAC 5 cut(s) 196, 277, 389, 631, 983
SaqAI TTAA 6 cut(s) 15, 459, 482, 828, 839, 978
Sau3AI GATC 5 cut(s) 139, 186, 307, 592, 699
Sau96I GGNCC 2 cut(s) 62, 338
SchI GAGTC 3 cut(s) 87, 270, 794
SduI GDGCHC 1 cut(s) 417
SetI ASST 8 cut(s) 107, 154, 201, 229, 369, 410, 469, 481
SfaNI GCATC 2 cut(s) 424, 446
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 7 cut(s) 125, 210, 471, 483, 623, 711, 951
SsiI CCGC 1 cut(s) 675
SspI AATATT 1 cut(s) 51
SspMI CTAG 3 cut(s) 518, 690, 776
StyI CCWWGG 3 cut(s) 298, 341, 695
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 3 cut(s) 217, 259, 361
TasI AATT 7 cut(s) 125, 210, 471, 483, 623, 711, 951
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 2 cut(s) 549, 847
Tru1I TTAA 6 cut(s) 15, 459, 482, 828, 839, 978
Tru9I TTAA 6 cut(s) 15, 459, 482, 828, 839, 978
TscAI CASTG 2 cut(s) 578, 772
TspDTI ATGAA 7 cut(s) 45, 97, 194, 621, 696, 932, 944
TspRI CASTG 2 cut(s) 578, 772
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 2 cut(s) 125, 623
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XspI CTAG 3 cut(s) 518, 690, 776
Zsp2I ATGCAT 2 cut(s) 439, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.