Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009064

Physical Location & Seq

Genomic Coordinates Reverse (-)

23330325 .. 23331374

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAATTTAGAAGAATGTCAACCATTTCTCTTGATCCAAGGCTTAACCTCCAAGCCATTAAGAACCCTCCTAACCAACATGGAGTTGTTCTTGAAGAAATTGAAGGTCTCCTCAGAGTTCACAAAGACGGAAACATCGAAAGGCCTCCAATTATCCCCAGTGTCCCAAGCACTCTGGCACTACCACATGGTGTCACAGCCAAAGACGTTGTCATTGACAAATTTACCAACTTATGGGCCCGTATTTATGTTCCAAGCCACCCCGGAAACCTCCCCGTGCTTGTCTACTTTCACGGTGGTGGATTCTGTGTTGGCTCTGCTGCTTGGAGCTGTTACCATGACTTCTTGGCCAACCTTGCTTGCAAAGCAAGTTGTGTCATCATCTCTGTGAATTACCGTTTAGCCCCAGAAAACCGTCTCCCTGCTGCTTATGACGACGGATTCAAAACTCTTATGTGGGTGAAACAACAAGCTATGAGTGAGCCTAGTGAGCAAAGATGGTGGTTAAGTAGGTGCAGCTTGTCAAGCTTGTTCATAGTTGGTGACAGTGCAGGGGCTAACATAGCCTACAATGTCACCACACAATTAGTCTCCCGTGACCCCTCCAGTTTAAGACCTTTGACTTTGAGTCTCAAGGGCACCATCTTGATCCAACCTTTCTTTGGAGGAGAGGCTCGTACTTGGTCCGAGAAATATGCAACTCAGCCACCAACCTCTGCACTAACTCTGTCGAATTCCGACGTGTATTGGCGATTGGCTCTGCCGTTAGGGGCCAACAAAGACCATCCATGGTGCAACCCTCTGGCAAACGGCGTGACCAAGCTGCGTGATTTAAGGCTCCCGGCCATAATGGTGTGCATATCCGAACTGGATATATTGAAGGATAGGAATTTGGAGGTCGGCAATGCCTTGAGTAGCTTGGGGAAAAGGGTGGAGACAACAATGTACGAAGGAGTTGGACATGCCTTCCAAGTTATGCAGAACTCTCAGCTCTCCTATTCCCGGACCCAAGATTTAATCTCTCACATCAAGGCCTTCATCAACCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

350

Amino Acids

38.74

Weight (kDa)

8.91

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16080
fragaria_vesca	FvH4_6g45240
malus_domestica	MD09G1086100.v1.1
prunus_persica	Prupe.3G238500_v2.0.a1
pyrus_communis	pycom09g01140 pycom11g10320
rosa_chinensis	RchiOBHm_Chr2g0162951 RchiOBHm_Chr2g0162961
rosa_laevigata	RLG00000021365
rosa_multiflora	Rmu_sc0000587.1_g000003 Rmu_sc0011038.1_g000002
rosa_roxburghii	Rroxscaffold_2G00087660
rosa_rugosa	Rorug02G0499500 Rorug02G0499600
rosa_samantha	Rh2AG565600 Rh2AG565700 Rh2BG578300 Rh2CG548000 Rh2CG548100 Rh2DG588500
rosa_wichuraiana	Rw2G046830 Rw2G046840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	285
AclWI	GGATC	2 cut(s)	29, 643
AcoI	YGGCCR	2 cut(s)	348, 843
AcsI	RAATTY	4 cut(s)	5, 221, 733, 889
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	2 cut(s)	679, 947
AfiI	CCNNNNNNNGG	3 cut(s)	234, 662, 1002
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	4 cut(s)	95, 104, 445, 880
AhdI	GACNNNNNGTC	1 cut(s)	627
AjiI	CACGTC	1 cut(s)	742
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	7 cut(s)	330, 473, 519, 528, 823, 918, 991
AluI	AGCT	7 cut(s)	330, 473, 519, 528, 823, 918, 991
Alw26I	GTCTC	5 cut(s)	113, 422, 595, 635, 929
AlwI	GGATC	2 cut(s)	29, 643
AoxI	GGCC	6 cut(s)	143, 237, 348, 771, 843, 1032
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	4 cut(s)	320, 425, 516, 823
ApoI	RAATTY	4 cut(s)	5, 221, 733, 889
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspS9I	GGNCC	5 cut(s)	237, 238, 684, 771, 1005
AsuC2I	CCSGG	3 cut(s)	264, 842, 1003
AsuHPI	GGTGA	3 cut(s)	472, 554, 568
AvaII	GGWCC	2 cut(s)	684, 1005
BaeGI	GKGCMC	2 cut(s)	241, 641
BalI	TGGCCA	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	307, 412, 528, 810
BccI	CCATC	3 cut(s)	492, 650, 792
BceAI	ACGGC	2 cut(s)	748, 826
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BcnI	CCSGG	3 cut(s)	264, 842, 1003
BcoDI	GTCTC	5 cut(s)	113, 422, 595, 635, 929
BfaI	CTAG	1 cut(s)	486
BisI	GCNGC	4 cut(s)	321, 426, 517, 824
BlsI	GCNGC	4 cut(s)	322, 427, 518, 825
Bme1390I	CCNGG	3 cut(s)	264, 842, 1003
Bme18I	GGWCC	2 cut(s)	684, 1005
BmeRI	GACNNNNNGTC	1 cut(s)	627
BmgBI	CACGTC	1 cut(s)	742
BmgT120I	GGNCC	5 cut(s)	237, 238, 684, 771, 1005
BmiI	GGNNCC	5 cut(s)	239, 640, 772, 839, 1007
BmrFI	CCNGG	3 cut(s)	264, 842, 1003
BmrI	ACTGGG	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	589
BpuEI	CTTGAG	2 cut(s)	617, 931
BpuMI	CCSGG	3 cut(s)	264, 842, 1003
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	38, 262, 788
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 662, 1002
Bse1I	ACTGG	3 cut(s)	159, 606, 873
Bse3DI	GCAATG	1 cut(s)	910
BseDI	CCNNGG	3 cut(s)	38, 262, 788
BseGI	GGATG	1 cut(s)	784
BseLI	CCNNNNNNNGG	3 cut(s)	234, 662, 1002
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	3 cut(s)	127, 716, 1001
BseNI	ACTGG	3 cut(s)	159, 606, 873
BseRI	GAGGAG	2 cut(s)	101, 681
BseSI	GKGCMC	2 cut(s)	241, 641
BseXI	GCAGC	4 cut(s)	307, 412, 528, 810
BsgI	GTGCAG	3 cut(s)	535, 570, 702
BshFI	GGCC	6 cut(s)	145, 239, 350, 773, 845, 1034
BshNI	GGYRCC	1 cut(s)	638
BsiSI	CCGG	3 cut(s)	264, 842, 1003
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	3 cut(s)	234, 662, 1002
BsmAI	GTCTC	5 cut(s)	113, 422, 595, 635, 929
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	6 cut(s)	145, 239, 350, 773, 845, 1034
Bso31I	GGTCTC	1 cut(s)	113
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	241, 641
Bsp143I	GATC	2 cut(s)	34, 648
Bsp19I	CCATGG	1 cut(s)	788
BspANI	GGCC	6 cut(s)	145, 239, 350, 773, 845, 1034
BspCNI	CTCAG	3 cut(s)	126, 715, 1000
BspLI	GGNNCC	5 cut(s)	239, 640, 772, 839, 1007
BspPI	GGATC	2 cut(s)	29, 643
BspT107I	GGYRCC	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	910
BsrI	ACTGG	3 cut(s)	159, 606, 873
BssECI	CCNNGG	3 cut(s)	38, 262, 788
BssMI	GATC	2 cut(s)	34, 648
BssT1I	CCWWGG	2 cut(s)	38, 788
Bst4CI	ACNGT	4 cut(s)	296, 398, 416, 548
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	113, 702, 987
BstDSI	CCRYGG	1 cut(s)	788
BstF5I	GGATG	1 cut(s)	784
BstKTI	GATC	2 cut(s)	37, 651
BstMAI	GTCTC	5 cut(s)	113, 422, 595, 635, 929
BstMBI	GATC	2 cut(s)	34, 648
BstMWI	GCNNNNNNNGC	5 cut(s)	356, 365, 490, 525, 563
BstNSI	RCATGY	1 cut(s)	965
BstSCI	CCNGG	3 cut(s)	262, 840, 1001
BstSLI	GKGCMC	2 cut(s)	241, 641
BstV1I	GCAGC	4 cut(s)	307, 412, 528, 810
BsuRI	GGCC	6 cut(s)	145, 239, 350, 773, 845, 1034
BtgI	CCRYGG	1 cut(s)	788
BtrI	CACGTC	1 cut(s)	742
BtsCI	GGATG	1 cut(s)	784
BtsIMutI	CAGTG	2 cut(s)	166, 553
Cac8I	GCNNGC	1 cut(s)	361
Cfr13I	GGNCC	5 cut(s)	237, 238, 684, 771, 1005
Csp6I	GTAC	2 cut(s)	678, 946
CspCI	CAANNNNNGTGG	2 cut(s)	482, 517
CviAII	CATG	5 cut(s)	80, 188, 338, 789, 962
CviQI	GTAC	2 cut(s)	678, 946
DdeI	CTNAG	3 cut(s)	113, 702, 987
DpnI	GATC	2 cut(s)	36, 650
DpnII	GATC	2 cut(s)	34, 648
DraIII	CACNNNGTG	1 cut(s)	191
DriI	GACNNNNNGTC	1 cut(s)	627
EaeI	YGGCCR	2 cut(s)	348, 843
Eam1105I	GACNNNNNGTC	1 cut(s)	627
Eco130I	CCWWGG	2 cut(s)	38, 788
Eco147I	AGGCCT	2 cut(s)	145, 1034
Eco24I	GRGCYC	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	684, 1005
EcoRI	GAATTC	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	38, 788
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	2 cut(s)	38, 788
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	5 cut(s)	83, 191, 341, 792, 965
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	5 cut(s)	79, 187, 337, 788, 961
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	321, 426, 517, 824
FokI	GGATG	1 cut(s)	771
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	4 cut(s)	321, 426, 517, 824
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	4 cut(s)	321, 426, 517, 824
GsuI	CTGGAG	1 cut(s)	589
HaeIII	GGCC	6 cut(s)	145, 239, 350, 773, 845, 1034
HapII	CCGG	3 cut(s)	264, 842, 1003
Hin1II	CATG	5 cut(s)	83, 191, 341, 792, 965
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	526
HinfI	GANTC	3 cut(s)	303, 441, 628
HpaII	CCGG	3 cut(s)	264, 842, 1003
HphI	GGTGA	3 cut(s)	472, 554, 568
Hpy166II	GTNNAC	3 cut(s)	21, 121, 286
Hpy188I	TCNGA	4 cut(s)	116, 688, 739, 865
Hpy188III	TCNNGA	3 cut(s)	32, 92, 646
Hpy8I	GTNNAC	3 cut(s)	21, 121, 286
Hpy99I	CGWCG	2 cut(s)	440, 743
HpyAV	CCTTC	5 cut(s)	98, 874, 944, 976, 1045
HpyCH4III	ACNGT	4 cut(s)	296, 398, 416, 548
HpyCH4IV	ACGT	2 cut(s)	207, 741
HpyCH4V	TGCA	8 cut(s)	363, 516, 551, 698, 719, 795, 858, 979
HpyF10VI	GCNNNNNNNGC	5 cut(s)	356, 365, 490, 525, 563
HpyF3I	CTNAG	3 cut(s)	113, 702, 987
HpySE526I	ACGT	2 cut(s)	207, 741
Hsp92II	CATG	5 cut(s)	83, 191, 341, 792, 965
Kzo9I	GATC	2 cut(s)	34, 648
LmnI	GCTCC	2 cut(s)	327, 843
Lsp1109I	GCAGC	4 cut(s)	307, 412, 528, 810
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	2 cut(s)	207, 741
MaeIII	GTNAC	6 cut(s)	193, 332, 542, 574, 596, 814
MalI	GATC	2 cut(s)	36, 650
MboI	GATC	2 cut(s)	34, 648
MboII	GAAGA	2 cut(s)	24, 107
MhlI	GDGCHC	2 cut(s)	241, 641
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	8 cut(s)	5, 99, 150, 221, 391, 584, 733, 889
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	3 cut(s)	676, 762, 937
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	6 cut(s)	45, 60, 506, 611, 833, 1016
MslI	CAYNNNNRTG	3 cut(s)	297, 386, 851
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	3 cut(s)	264, 842, 1003
MspR9I	CCNGG	3 cut(s)	264, 842, 1003
MwoI	GCNNNNNNNGC	5 cut(s)	356, 365, 490, 525, 563
NciI	CCSGG	3 cut(s)	264, 842, 1003
NcoI	CCATGG	1 cut(s)	788
NdeII	GATC	2 cut(s)	34, 648
NlaIII	CATG	5 cut(s)	83, 191, 341, 792, 965
NlaIV	GGNNCC	5 cut(s)	239, 640, 772, 839, 1007
NmuCI	GTSAC	5 cut(s)	193, 542, 574, 596, 814
NspI	RCATGY	1 cut(s)	965
OliI	CACNNNNGTG	1 cut(s)	297
PceI	AGGCCT	2 cut(s)	145, 1034
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	303, 441
PflFI	GACNNNGTC	1 cut(s)	209
PflMI	CCANNNNNTGG	1 cut(s)	234
PfoI	TCCNGGA	1 cut(s)	1001
PkrI	GCNGC	4 cut(s)	322, 427, 518, 825
PleI	GAGTC	1 cut(s)	636
PpsI	GAGTC	1 cut(s)	636
PspN4I	GGNNCC	5 cut(s)	239, 640, 772, 839, 1007
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	5 cut(s)	237, 238, 684, 771, 1005
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	679, 947
RsaNI	GTAC	2 cut(s)	678, 946
RseI	CAYNNNNRTG	3 cut(s)	297, 386, 851
SaqAI	TTAA	6 cut(s)	45, 60, 506, 611, 833, 1016
SatI	GCNGC	4 cut(s)	321, 426, 517, 824
Sau3AI	GATC	2 cut(s)	34, 648
Sau96I	GGNCC	5 cut(s)	237, 238, 684, 771, 1005
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	3 cut(s)	264, 842, 1003
SduI	GDGCHC	2 cut(s)	241, 641
SinI	GGWCC	2 cut(s)	684, 1005
SmiMI	CAYNNNNRTG	3 cut(s)	297, 386, 851
SmlI	CTYRAG	2 cut(s)	632, 910
SmoI	CTYRAG	2 cut(s)	632, 910
Sse9I	AATT	8 cut(s)	5, 99, 150, 221, 391, 584, 733, 889
SseBI	AGGCCT	2 cut(s)	145, 1034
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	2 cut(s)	145, 1034
StyD4I	CCNGG	3 cut(s)	262, 840, 1001
StyI	CCWWGG	2 cut(s)	38, 788
TaaI	ACNGT	4 cut(s)	296, 398, 416, 548
TaiI	ACGT	2 cut(s)	210, 744
TaqI	TCGA	2 cut(s)	138, 731
TasI	AATT	8 cut(s)	5, 99, 150, 221, 391, 584, 733, 889
TfiI	GAWTC	2 cut(s)	303, 441
Tru1I	TTAA	6 cut(s)	45, 60, 506, 611, 833, 1016
Tru9I	TTAA	6 cut(s)	45, 60, 506, 611, 833, 1016
TscAI	CASTG	2 cut(s)	166, 553
TseFI	GTSAC	5 cut(s)	193, 542, 574, 596, 814
TseI	GCWGC	4 cut(s)	320, 425, 516, 823
Tsp45I	GTSAC	5 cut(s)	193, 542, 574, 596, 814
TspDTI	ATGAA	3 cut(s)	17, 523, 1027
TspGWI	ACGGA	2 cut(s)	144, 453
TspRI	CASTG	2 cut(s)	166, 553
Tth111I	GACNNNGTC	1 cut(s)	209
Van91I	CCANNNNNTGG	1 cut(s)	234
VpaK11BI	GGWCC	2 cut(s)	684, 1005
XapI	RAATTY	4 cut(s)	5, 221, 733, 889
XceI	RCATGY	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.