Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014348

Physical Location & Seq

Genomic Coordinates Reverse (-)

79593059 .. 79594815

Gene Structure 1757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG578400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGTTACATACAGGAAGCACGTGAGAATCACGTGAAGAAGAAGGTAGAAGAAGCGCTGAGGAGCAAAATGAAGCAGAAGGCTATGAAGGAGTGTAAGGATTACGCTTCCAAATATGCGGAGTGCTCTACTGGGAGAACCATCTCCGTTGTTTGGCAGTGTCGCCAAGAAGCTAAGGAATTGAACAATTGCCTTCACCAATTCACTAATGATGATGTCTTGGAGCAAATGAAAAAAGATTACATGCTTCAACAACAGCAGAAGGAATCTACCAGAAGTCTAAATCCATCTGCTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cmc1

Protein Analysis

99

Amino Acids

11.63

Weight (kDa)

8.9

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cmc1	PF08583	21 - 84	6.4e-15	Cytochrome c oxidase biogenesis protein Cmc1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16060
fragaria_vesca	FvH4_6g45250
malus_domestica	MD07G1095900.v1.1 MD17G1105000.v1.1
prunus_persica	Prupe.3G238900_v2.0.a1 Prupe.3G238900_v2.0.a1
pyrus_communis	pycom09g01120 pycom17g07570
rosa_chinensis	RchiOBHm_Chr2g0162971
rosa_multiflora	Rmu_sc0011038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00087650
rosa_rugosa	Rorug02G0499600
rosa_samantha	Rh2AG565800 Rh2BG578400 Rh2CG548200 Rh2DG588600
rosa_wichuraiana	Rw2G046850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AcvI	CACGTG	2 cut(s)	23, 34
AfeI	AGCGCT	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	184, 251
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	128
Aor51HI	AGCGCT	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	188
BbrPI	CACGTG	2 cut(s)	23, 34
Bbv12I	GWGCWC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	149, 295
BfoI	RGCGCY	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	141
Bpu10I	CCTNAGC	2 cut(s)	59, 174
BsaAI	YACGTR	2 cut(s)	23, 34
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	136
BstBAI	YACGTR	2 cut(s)	23, 34
BstDEI	CTNAG	2 cut(s)	59, 174
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	58
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	2 cut(s)	83, 173
CviKI_1	RGCY	2 cut(s)	83, 173
DdeI	CTNAG	2 cut(s)	59, 174
Eco47III	AGCGCT	1 cut(s)	57
Eco72I	CACGTG	2 cut(s)	23, 34
FaeI	CATG	1 cut(s)	247
FaiI	YATR	4 cut(s)	11, 86, 117, 245
FatI	CATG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	59
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	28, 266
HphI	GGTGA	1 cut(s)	188
HpyAV	CCTTC	5 cut(s)	37, 73, 82, 203, 256
HpyCH4IV	ACGT	2 cut(s)	22, 33
HpyF3I	CTNAG	2 cut(s)	59, 174
HpySE526I	ACGT	2 cut(s)	22, 33
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	63, 223
LpnPI	CCDG	2 cut(s)	117, 286
MaeII	ACGT	2 cut(s)	22, 33
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	3 cut(s)	49, 52, 62
MfeI	CAATTG	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	3 cut(s)	179, 187, 200
MnlI	CCTC	1 cut(s)	54
MunI	CAATTG	1 cut(s)	187
NlaIII	CATG	1 cut(s)	247
NspI	RCATGY	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	28, 266
PmaCI	CACGTG	2 cut(s)	23, 34
PmlI	CACGTG	2 cut(s)	23, 34
Ppu21I	YACGTR	2 cut(s)	23, 34
PspCI	CACGTG	2 cut(s)	23, 34
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	4 cut(s)	25, 36, 48, 175
Sse9I	AATT	3 cut(s)	179, 187, 200
SsiI	CCGC	1 cut(s)	119
TaiI	ACGT	2 cut(s)	25, 36
TasI	AATT	3 cut(s)	179, 187, 200
TfiI	GAWTC	2 cut(s)	28, 266
TscAI	CASTG	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	86, 101, 245
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	164
XceI	RCATGY	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.