AT5G16920

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
5567000 .. 5568128
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16920.1

Sequence Viewer

Length: 771 bp
ATGAGAGCTATTCAAACTCATGTGATAACCTTCTGCATGTTAGTCATCATCGTAACATCATCAACAAGAGCCCAAAAGAGTCCTCATGTGCCTAACAACCATGAACTTTCTATCGCCATCGAAGAAATGGAGAAAGCAAATTACTTCTCTTTTGTGATGCTCATCAACATGTTACCATCCGTAAATCCTCGATTCTTAGCCAATGTCACATTCTTGATGCCAAAGGACAAAACCCTTTCTACATCAAACATTATTAATCAACAAGATTCGGTTACCGAGTTCTTGCTTCGCCACTCAATCCCTTCTTCTCTTCTTTTCGAGCACCTTAATCTCATCCCCAATGGCTCCATTGTTCCTTCCTCTTTACCACATTACACCCTCGAGATCTCCAATGGTGGAAGATCAAACTACTTTCTCAATAACGTCAAGATTATAAGCCGCAACATATGTAGCTTAGGCTCTATCAAATGTCATGGAATCGACGGTATACTACAATCTCCAAGTACTGTCGACGACGATTCTCCTCGAAATAATCACACATTACCCTTCATTTCTTGCCCTAGCAGTCACAACAATAGTGACCAAAATAGTCATAACAATAGTGATCAAAATAGTTCTCGTCCTGCTGATCATACTCTTACCGCTCCTCCTCCAGTCAGCAGTCCGATTAGCCAGCCAAAATCAGATTCTCCTAGCATCCATGACGTGAAAATGCTGACTTCGATCGTTATTCCTTTGTTTGGATTATTAGCGAGTTTGATCGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

256

Amino Acids

28.1

Weight (kDa)

6.62

Isoelectric Point (pI)

63.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016553)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 644
AccI GTMKAC 2 cut(s) 487, 510
AciI CCGC 2 cut(s) 439, 642
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 740
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 1 cut(s) 14
AjiI CACGTC 1 cut(s) 706
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 670, 702
AluBI AGCT 2 cut(s) 8, 453
AluI AGCT 2 cut(s) 8, 453
Alw21I GWGCWC 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 380
AseI ATTAAT 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 380
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 2 cut(s) 125, 184
BclI TGATCA 2 cut(s) 604, 628
BfaI CTAG 2 cut(s) 561, 693
BglII AGATCT 1 cut(s) 384
BisI GCNGC 1 cut(s) 439
BlsI GCNGC 1 cut(s) 440
BmcAI AGTACT 1 cut(s) 505
BmeT110I CYCGRG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 706
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 3 cut(s) 147, 207, 705
BpmI CTGGAG 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse1I ACTGG 1 cut(s) 653
Bse8I GATNNNNATC 1 cut(s) 161
BseGI GGATG 3 cut(s) 176, 333, 696
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 740
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 3 cut(s) 513, 636, 639
Bsh1285I CGRYCG 1 cut(s) 726
BsiEI CGRYCG 1 cut(s) 726
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 740
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 73, 324
Bsp143I GATC 6 cut(s) 384, 401, 604, 628, 723, 759
BspACI CCGC 2 cut(s) 439, 642
BspLI GGNNCC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 644
BsrI ACTGG 1 cut(s) 653
BssMI GATC 6 cut(s) 384, 401, 604, 628, 723, 759
BssNAI GTATAC 1 cut(s) 488
Bst1107I GTATAC 1 cut(s) 488
Bst4CI ACNGT 2 cut(s) 485, 508
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 2 cut(s) 196, 454
BstEII GGTNACC 1 cut(s) 271
BstF5I GGATG 3 cut(s) 176, 333, 696
BstKTI GATC 6 cut(s) 387, 404, 607, 631, 726, 762
BstMBI GATC 6 cut(s) 384, 401, 604, 628, 723, 759
BstMCI CGRYCG 1 cut(s) 726
BstNSI RCATGY 3 cut(s) 40, 172, 769
BstPI GGTNACC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BstZ17I GTATAC 1 cut(s) 488
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 3 cut(s) 176, 333, 696
Cac8I GCNNGC 1 cut(s) 674
Csp6I GTAC 1 cut(s) 504
CviAII CATG 8 cut(s) 20, 37, 86, 101, 169, 473, 701, 766
CviJI RGCY 9 cut(s) 8, 71, 200, 345, 438, 453, 459, 672, 676
CviKI_1 RGCY 9 cut(s) 8, 71, 200, 345, 438, 453, 459, 672, 676
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 2 cut(s) 196, 454
DpnI GATC 6 cut(s) 386, 403, 606, 630, 725, 761
DpnII GATC 6 cut(s) 384, 401, 604, 628, 723, 759
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 380
Eco91I GGTNACC 1 cut(s) 271
EcoO65I GGTNACC 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 8 cut(s) 23, 40, 89, 104, 172, 476, 704, 769
FatI CATG 8 cut(s) 19, 36, 85, 100, 168, 472, 700, 765
FauNDI CATATG 1 cut(s) 446
FbaI TGATCA 2 cut(s) 604, 628
FblI GTMKAC 2 cut(s) 487, 510
Fnu4HI GCNGC 1 cut(s) 439
FokI GGATG 3 cut(s) 163, 320, 683
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 439
FspBI CTAG 2 cut(s) 561, 693
GluI GCNGC 1 cut(s) 439
GsuI CTGGAG 1 cut(s) 636
Hin1II CATG 8 cut(s) 23, 40, 89, 104, 172, 476, 704, 769
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 6 cut(s) 79, 192, 266, 477, 518, 686
Hpy166II GTNNAC 2 cut(s) 488, 511
Hpy188I TCNGA 2 cut(s) 666, 685
Hpy188III TCNNGA 3 cut(s) 214, 382, 427
Hpy8I GTNNAC 2 cut(s) 488, 511
Hpy99I CGWCG 3 cut(s) 485, 515, 518
HpyAV CCTTC 4 cut(s) 40, 312, 366, 556
HpyCH4III ACNGT 2 cut(s) 485, 508
HpyCH4IV ACGT 2 cut(s) 423, 705
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 196, 454
HpySE526I ACGT 2 cut(s) 423, 705
Hsp92II CATG 8 cut(s) 23, 40, 89, 104, 172, 476, 704, 769
Ksp22I TGATCA 2 cut(s) 604, 628
Kzo9I GATC 6 cut(s) 384, 401, 604, 628, 723, 759
LmnI GCTCC 2 cut(s) 350, 649
LpnPI CCDG 3 cut(s) 636, 666, 686
LweI GCATC 3 cut(s) 147, 207, 705
MaeI CTAG 2 cut(s) 561, 693
MaeII ACGT 2 cut(s) 423, 705
MaeIII GTNAC 6 cut(s) 52, 171, 205, 271, 566, 578
MalI GATC 6 cut(s) 386, 403, 606, 630, 725, 761
MbiI CCGCTC 1 cut(s) 644
MboI GATC 6 cut(s) 384, 401, 604, 628, 723, 759
MboII GAAGA 4 cut(s) 134, 297, 302, 411
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 2 cut(s) 73, 324
MluCI AATT 1 cut(s) 139
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 7 cut(s) 93, 198, 370, 389, 534, 657, 660
MseI TTAA 2 cut(s) 255, 327
MslI CAYNNNNRTG 1 cut(s) 167
NdeI CATATG 1 cut(s) 446
NdeII GATC 6 cut(s) 384, 401, 604, 628, 723, 759
NlaIII CATG 8 cut(s) 23, 40, 89, 104, 172, 476, 704, 769
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 3 cut(s) 205, 566, 578
NspI RCATGY 3 cut(s) 40, 172, 769
PaeR7I CTCGAG 1 cut(s) 380
PciI ACATGT 1 cut(s) 168
PfeI GAWTC 5 cut(s) 192, 266, 477, 518, 686
PkrI GCNGC 1 cut(s) 440
Ple19I CGATCG 1 cut(s) 726
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PscI ACATGT 1 cut(s) 168
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 434
PspEI GGTNACC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 346
PsuI RGATCY 1 cut(s) 384
PvuI CGATCG 1 cut(s) 726
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 1 cut(s) 167
SalI GTCGAC 1 cut(s) 509
SaqAI TTAA 2 cut(s) 255, 327
SatI GCNGC 1 cut(s) 439
Sau3AI GATC 6 cut(s) 384, 401, 604, 628, 723, 759
ScaI AGTACT 1 cut(s) 505
SchI GAGTC 1 cut(s) 88
SduI GDGCHC 2 cut(s) 73, 324
SetI ASST 6 cut(s) 10, 32, 327, 426, 455, 708
SfaNI GCATC 3 cut(s) 147, 207, 705
Sfr274I CTCGAG 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 1 cut(s) 139
SsiI CCGC 2 cut(s) 439, 642
SspMI CTAG 2 cut(s) 561, 693
TaaI ACNGT 2 cut(s) 485, 508
TaiI ACGT 2 cut(s) 426, 708
TaqI TCGA 8 cut(s) 120, 190, 318, 381, 480, 510, 526, 722
TasI AATT 1 cut(s) 139
TatI WGTACW 1 cut(s) 503
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 5 cut(s) 192, 266, 477, 518, 686
Tru1I TTAA 2 cut(s) 255, 327
Tru9I TTAA 2 cut(s) 255, 327
TseFI GTSAC 3 cut(s) 205, 566, 578
Tsp45I GTSAC 3 cut(s) 205, 566, 578
TspDTI ATGAA 2 cut(s) 117, 538
TspGWI ACGGA 1 cut(s) 169
VspI ATTAAT 1 cut(s) 255
XceI RCATGY 3 cut(s) 40, 172, 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 380
XmiI GTMKAC 2 cut(s) 487, 510
XspI CTAG 2 cut(s) 561, 693
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.