Rh5DG006900

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016553
Physical Location & Seq
Reverse (-)
426024 .. 426539
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG006900.1

Sequence Viewer

Length: 516 bp
ATGGATCCTCTATTGTTTTTGTTCGTCCTTCTTGTTGCTCTCTTCCCAATATCAGAATCACAACTAGATGGAGAACCAGAGCTCATCGCTCGCGGTTTCAACTCCAGTGATTTGCAGGATGCAGTAAATGATATGAGAGCAAAGTCTTACTATGGATTTGCAATCCTTTTGCAGATGGTGAATGGATTGGCACAACAAAACCGGCCCTTAACCTTCTTCATGCCAGCTGACTCACAATTATCTGAATCCCCAATCTCGGTACAACACCTTGAAGAGTTCATGACAAGCCATGCAATCTCAATGCCTCTCTCGTTCAATGACCTTTTACATTTTCCAACTGGGACCCTTGTCCCAACTGGTGTTGATAACAAGATGATCAGAATCAACAACCGGGGAAGAACTAGTTTCTATGTTAACAATGCACACATTGTCACACCAAACATTTGCAATGGCACTTCCTTCAGGTGCCATGGAATTGATGCAGTAATTCAGTTTGGCAATGTTACAGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

171

Amino Acids

18.94

Weight (kDa)

5.16

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 59 - 163 2.3e-08 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16920
fragaria_vesca FvH4_3g00560
prunus_persica Prupe.2G326500_v2.0.a1 Prupe.4G006800_v2.0.a1
rosa_laevigata RLG00000030894
rosa_multiflora Rmu_co8409335.1_g000001 Rmu_sc0000255.1_g000007 Rmu_sc0011992.1_g000003
rosa_roxburghii Rroxscaffold_1G00075460
rosa_rugosa Rorug04G0386300
rosa_samantha Rh5BG008200 Rh5CG006900 Rh5DG006900
rosa_wichuraiana Rw5G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 465
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 445
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 3 cut(s) 100, 272, 316
AhlI ACTAGT 1 cut(s) 401
AluBI AGCT 3 cut(s) 82, 227, 509
AluI AGCT 3 cut(s) 82, 227, 509
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 204, 342
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 342
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 2 cut(s) 62, 169
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 65, 402
Bme1390I CCNGG 1 cut(s) 392
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 204, 342
BmiI GGNNCC 4 cut(s) 6, 343, 344, 467
BmrFI CCNGG 1 cut(s) 392
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 109, 469
BmuI ACTGGG 1 cut(s) 348
BoxI GACNNNNGTC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 391, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 3 cut(s) 105, 343, 361
Bse3DI GCAATG 2 cut(s) 454, 505
Bse8I GATNNNNATC 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 391, 469
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 2 cut(s) 454, 505
BseNI ACTGG 3 cut(s) 105, 343, 361
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 202, 391
BslFI GGGAC 2 cut(s) 335, 355
BslI CCNNNNNNNGG 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 335, 355
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 4, 375
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 205
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 6, 343, 344, 467
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 465
BsrDI GCAATG 2 cut(s) 454, 505
BsrFI RCCGGY 1 cut(s) 201
BsrI ACTGG 3 cut(s) 105, 343, 361
BssAI RCCGGY 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 391, 469
BssMI GATC 2 cut(s) 4, 375
BssT1I CCWWGG 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 47, 267
BstC8I GCNNGC 2 cut(s) 91, 225
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 2 cut(s) 7, 378
BstMBI GATC 2 cut(s) 4, 375
BstPAI GACNNNNGTC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 390
BstUI CGCG 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 469
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 91, 225
CciI TCATGA 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 2 cut(s) 204, 342
Csp6I GTAC 1 cut(s) 260
CviAII CATG 4 cut(s) 220, 280, 290, 470
CviJI RGCY 5 cut(s) 82, 205, 227, 288, 509
CviKI_1 RGCY 5 cut(s) 82, 205, 227, 288, 509
CviQI GTAC 1 cut(s) 260
DpnI GATC 2 cut(s) 6, 377
DpnII GATC 2 cut(s) 4, 375
Eam1104I CTCTTC 2 cut(s) 47, 267
EarI CTCTTC 2 cut(s) 47, 267
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 4 cut(s) 223, 283, 293, 473
FaiI YATR 8 cut(s) 134, 153, 221, 281, 291, 411, 471, 514
FaqI GGGAC 2 cut(s) 335, 355
FatI CATG 4 cut(s) 219, 279, 289, 469
FbaI TGATCA 1 cut(s) 375
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 84
FspBI CTAG 2 cut(s) 65, 402
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 202, 391
Hin1II CATG 4 cut(s) 223, 283, 293, 473
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 4 cut(s) 56, 230, 245, 381
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 2 cut(s) 202, 391
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 55, 244, 380
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 3 cut(s) 38, 223, 469
HpyCH4V TGCA 8 cut(s) 115, 122, 161, 172, 293, 422, 447, 482
Hsp92II CATG 4 cut(s) 223, 283, 293, 473
KflI GGGWCCC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 375
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 2 cut(s) 4, 375
LpnPI CCDG 9 cut(s) 90, 101, 118, 215, 237, 324, 342, 404, 448
LweI GCATC 2 cut(s) 109, 469
MaeI CTAG 2 cut(s) 65, 402
MaeIII GTNAC 2 cut(s) 430, 502
MalI GATC 2 cut(s) 6, 377
MboI GATC 2 cut(s) 4, 375
MboII GAAGA 4 cut(s) 34, 208, 284, 408
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 3 cut(s) 236, 474, 486
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 2 cut(s) 18, 315
MseI TTAA 2 cut(s) 209, 414
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 2 cut(s) 202, 391
MspR9I CCNGG 1 cut(s) 392
MvnI CGCG 1 cut(s) 93
NciI CCSGG 1 cut(s) 392
NcoI CCATGG 1 cut(s) 469
NdeII GATC 2 cut(s) 4, 375
NlaIII CATG 4 cut(s) 223, 283, 293, 473
NlaIV GGNNCC 4 cut(s) 6, 343, 344, 467
NmuCI GTSAC 1 cut(s) 430
PagI TCATGA 1 cut(s) 279
PfeI GAWTC 3 cut(s) 56, 245, 381
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 342
PshAI GACNNNNGTC 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 342
PspN4I GGNNCC 4 cut(s) 6, 343, 344, 467
PspPI GGNCC 2 cut(s) 204, 342
PspPPI RGGWCCY 1 cut(s) 342
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 209, 414
Sau3AI GATC 2 cut(s) 4, 375
Sau96I GGNCC 2 cut(s) 204, 342
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 1 cut(s) 84
SetI ASST 7 cut(s) 84, 215, 229, 270, 324, 467, 511
SfaNI GCATC 2 cut(s) 109, 469
SinI GGWCC 1 cut(s) 342
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 3 cut(s) 236, 474, 486
SsiI CCGC 1 cut(s) 93
SspMI CTAG 2 cut(s) 65, 402
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 390
StyI CCWWGG 1 cut(s) 469
TasI AATT 3 cut(s) 236, 474, 486
TfiI GAWTC 3 cut(s) 56, 245, 381
Tru1I TTAA 2 cut(s) 209, 414
Tru9I TTAA 2 cut(s) 209, 414
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 208, 268
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 342
XspI CTAG 2 cut(s) 65, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.