Rroxscaffold_1G00075460

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016553
Physical Location & Seq
Forward (+)
96215507 .. 96216040
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075460.1

Sequence Viewer

Length: 534 bp
ATGTTTCTCCACCCTAAAATGGATCCTCTATTGTTTTTGTTCGTCCTTCTTGTTGCTCTCTTCCCAATATCAGAATCACAACTAGATGGAGAACCAGAGCTCATCGCTCGAGGTTTCAACTCCGGTGATTTGCAGGATGCAGTAAATGATATGAGAGCAAAGTCTTACTATGGATTTGCCATCCTTTTGCAGATGGTGAATGGATTGGCACAACAAAACCGGCCCTTAACCTTCTTCATGCCAGCTGACTCACAATTATCTCAATCCCCAATCTCAGTACAACACCTTGAAGAGTTCATGACAAGCCATGCAATCTCAATGCCTCTCTCGTTCAATGACCTTTTACATTTTCCAACTGGGAGCCTTGTCCCAACTGGTGTTGATAACAAGATGATCAGAATCAACAACCGGGGAAGAACTAGTTTCTATGTTAACAATGCACACATTGTCACACCAAACATTTGCAATGGCACTTCCTTCAGGTGCCATGGAATTGATGCAGTAATTCAGTTTGGCAATGTTACAGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

177

Amino Acids

19.65

Weight (kDa)

5.78

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 65 - 169 2.4e-08 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16920
fragaria_vesca FvH4_3g00560
prunus_persica Prupe.2G326500_v2.0.a1 Prupe.4G006800_v2.0.a1
rosa_laevigata RLG00000030894
rosa_multiflora Rmu_co8409335.1_g000001 Rmu_sc0000255.1_g000007 Rmu_sc0011992.1_g000003
rosa_roxburghii Rroxscaffold_1G00075460
rosa_rugosa Rorug04G0386300
rosa_samantha Rh5BG008200 Rh5CG006900 Rh5DG006900
rosa_wichuraiana Rw5G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 483
AclWI GGATC 2 cut(s) 17, 30
AcuI CTGAAG 1 cut(s) 463
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 3 cut(s) 118, 290, 334
AhlI ACTAGT 1 cut(s) 419
AluBI AGCT 3 cut(s) 100, 245, 527
AluI AGCT 3 cut(s) 100, 245, 527
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 2 cut(s) 17, 30
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 137, 208
AvaI CYCGRG 1 cut(s) 108
BamHI GGATCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 3 cut(s) 80, 187, 188
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 410
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 2 cut(s) 83, 420
Bme1390I CCNGG 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 24, 362, 485
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 2 cut(s) 127, 487
BmuI ACTGGG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 410
BsaBI GATNNNNATC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 409, 487
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 2 cut(s) 361, 379
Bse3DI GCAATG 2 cut(s) 472, 523
Bse8I GATNNNNATC 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 409, 487
BseGI GGATG 2 cut(s) 142, 180
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 2 cut(s) 472, 523
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 361, 379
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 3 cut(s) 123, 220, 409
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 22, 393
Bsp19I CCATGG 1 cut(s) 487
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 287
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 3 cut(s) 24, 362, 485
BspPI GGATC 2 cut(s) 17, 30
BspT107I GGYRCC 1 cut(s) 483
BsrDI GCAATG 2 cut(s) 472, 523
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 2 cut(s) 361, 379
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 409, 487
BssMI GATC 2 cut(s) 22, 393
BssT1I CCWWGG 1 cut(s) 487
Bst6I CTCTTC 2 cut(s) 65, 285
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 274
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 2 cut(s) 142, 180
BstKTI GATC 2 cut(s) 25, 396
BstMBI GATC 2 cut(s) 22, 393
BstSCI CCNGG 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 487
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 142, 180
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 278
CviAII CATG 4 cut(s) 238, 298, 308, 488
CviJI RGCY 6 cut(s) 100, 223, 245, 306, 363, 527
CviKI_1 RGCY 6 cut(s) 100, 223, 245, 306, 363, 527
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 274
DpnI GATC 2 cut(s) 24, 395
DpnII GATC 2 cut(s) 22, 393
Eam1104I CTCTTC 2 cut(s) 65, 285
EarI CTCTTC 2 cut(s) 65, 285
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 463
Eco88I CYCGRG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 4 cut(s) 241, 301, 311, 491
FaiI YATR 8 cut(s) 152, 171, 239, 299, 309, 429, 489, 532
FaqI GGGAC 1 cut(s) 353
FatI CATG 4 cut(s) 237, 297, 307, 487
FbaI TGATCA 1 cut(s) 393
FokI GGATG 2 cut(s) 149, 167
FriOI GRGCYC 1 cut(s) 102
FspBI CTAG 2 cut(s) 83, 420
HaeIII GGCC 1 cut(s) 223
HapII CCGG 3 cut(s) 123, 220, 409
Hin1II CATG 4 cut(s) 241, 301, 311, 491
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 3 cut(s) 74, 248, 399
HpaI GTTAAC 1 cut(s) 433
HpaII CCGG 3 cut(s) 123, 220, 409
HphI GGTGA 2 cut(s) 137, 208
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 2 cut(s) 73, 398
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 56, 241, 487
HpyCH4V TGCA 7 cut(s) 133, 140, 190, 311, 440, 465, 500
HpyF3I CTNAG 1 cut(s) 274
Hsp92II CATG 4 cut(s) 241, 301, 311, 491
Ksp22I TGATCA 1 cut(s) 393
KspAI GTTAAC 1 cut(s) 433
Kzo9I GATC 2 cut(s) 22, 393
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 9 cut(s) 108, 119, 136, 233, 255, 342, 360, 422, 466
LweI GCATC 2 cut(s) 127, 487
MaeI CTAG 2 cut(s) 83, 420
MaeIII GTNAC 2 cut(s) 448, 520
MalI GATC 2 cut(s) 24, 395
MboI GATC 2 cut(s) 22, 393
MboII GAAGA 4 cut(s) 52, 226, 302, 426
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 3 cut(s) 254, 492, 504
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 3 cut(s) 36, 104, 333
MseI TTAA 2 cut(s) 227, 432
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 3 cut(s) 123, 220, 409
MspR9I CCNGG 1 cut(s) 410
NciI CCSGG 1 cut(s) 410
NcoI CCATGG 1 cut(s) 487
NdeII GATC 2 cut(s) 22, 393
NlaIII CATG 4 cut(s) 241, 301, 311, 491
NlaIV GGNNCC 3 cut(s) 24, 362, 485
NmuCI GTSAC 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 108
PagI TCATGA 1 cut(s) 297
PfeI GAWTC 2 cut(s) 74, 399
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 24, 362, 485
PspPI GGNCC 1 cut(s) 222
PspXI VCTCGAGB 1 cut(s) 108
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 227, 432
Sau3AI GATC 2 cut(s) 22, 393
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 1 cut(s) 102
SetI ASST 8 cut(s) 102, 115, 233, 247, 288, 342, 485, 529
SfaNI GCATC 2 cut(s) 127, 487
Sfr274I CTCGAG 1 cut(s) 108
SlaI CTCGAG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 3 cut(s) 254, 492, 504
SspMI CTAG 2 cut(s) 83, 420
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 487
TaqI TCGA 1 cut(s) 109
TasI AATT 3 cut(s) 254, 492, 504
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 2 cut(s) 74, 399
Tru1I TTAA 2 cut(s) 227, 432
Tru9I TTAA 2 cut(s) 227, 432
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 226, 286
XhoI CTCGAG 1 cut(s) 108
XspI CTAG 2 cut(s) 83, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.