Prupe.4G006800_v2.0.a1

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
364301 .. 364735
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G006800.1

Sequence Viewer

Length: 435 bp
GTCCACGGTCTCAACTACACCGATGTGCAGGCAGCAGTTACGGATATGAGATCAAAGTCTTACTACGGATTTGCAATTCTTCTGCAGATGCTAAACAGCACATCGCAACCATACCGGTCCTTAACCTTCTTGATGCCAGGTGACTCCCAATTATCTGAATCCCCAATATCAGTAGACCATCTCGAAGATTTCCTGATAAGTCATGCTGTCACAACGCCTCTCCTTTTCAATGACTTGTTACATTTTCCAACCGGGAGCCTTATACCGTCTGGTGCCGAGAACAAGATGATCAGAATCAACAACCGTGGCAGAGCTAACTTCTTTGTCAACAATGCACATATTGTCACACCCAATATTTGCCAGAACTCTTACATTAAGTGCCATGGAATTGATACTGTAATTCAGTACGAGAATAGCTCATACATAAATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.1

Weight (kDa)

6.02

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016553)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 174
AfaI GTAC 1 cut(s) 407
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 136
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 3 cut(s) 314, 417, 432
AluI AGCT 3 cut(s) 314, 417, 432
Alw26I GTCTC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 32
AsiGI ACCGGT 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 1 cut(s) 288
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 138, 253
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 257, 274
BmrFI CCNGG 2 cut(s) 138, 253
BmsI GCATC 2 cut(s) 78, 123
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpuMI CCSGG 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 4, 304, 382
BsaWI WCCGGW 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 293
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 4, 304, 382
BseJI GATNNNNATC 1 cut(s) 293
BseXI GCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 272
BshTI ACCGGT 1 cut(s) 114
BsiSI CCGG 2 cut(s) 115, 252
BsmAI GTCTC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 50, 288
Bsp19I CCATGG 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 257, 274
BspMAI CTGCAG 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 4, 304, 382
BssMI GATC 2 cut(s) 50, 288
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 4 cut(s) 8, 267, 305, 397
BstC8I GCNNGC 1 cut(s) 30
BstDSI CCRYGG 3 cut(s) 4, 304, 382
BstKTI GATC 2 cut(s) 53, 291
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 2 cut(s) 50, 288
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 136, 251
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 44
BtgI CCRYGG 3 cut(s) 4, 304, 382
BtgZI GCGATG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 406
CspAI ACCGGT 1 cut(s) 114
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 2 cut(s) 203, 383
CviJI RGCY 4 cut(s) 258, 314, 417, 432
CviKI_1 RGCY 4 cut(s) 258, 314, 417, 432
CviQI GTAC 1 cut(s) 406
DpnI GATC 2 cut(s) 52, 290
DpnII GATC 2 cut(s) 50, 288
Eco130I CCWWGG 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 2 cut(s) 206, 386
FaiI YATR 8 cut(s) 47, 112, 204, 263, 339, 384, 421, 425
FatI CATG 2 cut(s) 202, 382
FbaI TGATCA 1 cut(s) 288
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
HapII CCGG 2 cut(s) 115, 252
Hin1II CATG 2 cut(s) 206, 386
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 143, 158, 294
HpaII CCGG 2 cut(s) 115, 252
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 4, 175, 328
Hpy188I TCNGA 2 cut(s) 157, 293
Hpy188III TCNNGA 3 cut(s) 130, 182, 193
Hpy8I GTNNAC 3 cut(s) 4, 175, 328
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 4 cut(s) 8, 267, 305, 397
HpyCH4V TGCA 4 cut(s) 28, 74, 85, 335
Hsp92II CATG 2 cut(s) 206, 386
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 50, 288
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 8 cut(s) 14, 123, 128, 150, 206, 255, 265, 374
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 2 cut(s) 78, 123
MaeIII GTNAC 5 cut(s) 37, 140, 208, 237, 343
MalI GATC 2 cut(s) 52, 290
MboI GATC 2 cut(s) 50, 288
MboII GAAGA 2 cut(s) 71, 197
MluCI AATT 4 cut(s) 75, 149, 387, 399
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 1 cut(s) 228
MseI TTAA 2 cut(s) 122, 375
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 2 cut(s) 115, 252
MspR9I CCNGG 2 cut(s) 138, 253
MvaI CCWGG 1 cut(s) 138
NciI CCSGG 1 cut(s) 253
NcoI CCATGG 1 cut(s) 382
NdeII GATC 2 cut(s) 50, 288
NlaIII CATG 2 cut(s) 206, 386
NlaIV GGNNCC 2 cut(s) 257, 274
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 3 cut(s) 140, 208, 343
OliI CACNNNNGTG 1 cut(s) 23
PfeI GAWTC 2 cut(s) 158, 294
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 257, 274
PspPI GGNCC 1 cut(s) 117
PstI CTGCAG 1 cut(s) 87
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 122, 375
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 50, 288
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 138, 253
SetI ASST 5 cut(s) 128, 142, 316, 419, 434
SfaNI GCATC 2 cut(s) 78, 123
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 4 cut(s) 75, 149, 387, 399
SspI AATATT 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 136, 251
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 4 cut(s) 8, 267, 305, 397
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 75, 149, 387, 399
TfiI GAWTC 2 cut(s) 158, 294
Tru1I TTAA 2 cut(s) 122, 375
Tru9I TTAA 2 cut(s) 122, 375
TseFI GTSAC 3 cut(s) 140, 208, 343
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 3 cut(s) 140, 208, 343
TspGWI ACGGA 2 cut(s) 56, 81
VpaK11BI GGWCC 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.