FvH4_3g00560

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016553
Physical Location & Seq
Reverse (-)
288877 .. 289389
513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00560.t1

Sequence Viewer

Length: 513 bp
ATGGATCCTCTGTTGTTTGTGTTCGTCCTTGTTGCTCTCTTCCCCATATCAGAAGCACAACTAGACGGGGAACCAGAGCTCATCCCTCACGCTTCGAACAACACTGATTTGCGGGATGCAGTAAATGATATGAGAGCAAAGTCTTACCATGGATTTGCAATACTACTGCAGATGGTGAATGGATTTGCACAACAAAACCGGCCCTTAACCTTCTTGATGCCACCTGACTCAAAACTATCTGAATCCGCAATCTCGGTGAACTACATTGAAGAGTTCATCACAAGCCATGCAGTCCCGATGCCTCTCACGTTCAATGACATTTTACATTTTCCAACTGCGACCCTTGTGCCAACTGGTTTTGATAGCAAGATGATCAGAATCAACAACCGGGGCAGAGCTAGTTTCTCTGTTAACAATGCACACATTGTCACACCAAACATTTGCAATGGCACTTTCTTCAGGTGTCATGGAATTGATGCAGTAATTCAGTTTGGGAATGTTTCAGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

171

Amino Acids

18.78

Weight (kDa)

5.57

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16920
fragaria_vesca FvH4_3g00560
prunus_persica Prupe.2G326500_v2.0.a1 Prupe.4G006800_v2.0.a1
rosa_laevigata RLG00000030894
rosa_multiflora Rmu_co8409335.1_g000001 Rmu_sc0000255.1_g000007 Rmu_sc0011992.1_g000003
rosa_roxburghii Rroxscaffold_1G00075460
rosa_rugosa Rorug04G0386300
rosa_samantha Rh5BG008200 Rh5CG006900 Rh5DG006900
rosa_wichuraiana Rw5G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 112, 246
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 442
AgsI TTSAA 2 cut(s) 269, 313
AluBI AGCT 3 cut(s) 79, 398, 506
AluI AGCT 3 cut(s) 79, 398, 506
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 187, 268
AsuII TTCGAA 1 cut(s) 95
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 1 cut(s) 389
BfaI CTAG 2 cut(s) 62, 399
BfmI CTRYAG 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 6, 72
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 4 cut(s) 106, 207, 288, 466
Bpu14I TTCGAA 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 148, 388
Bse118I RCCGGY 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 451
Bse8I GATNNNNATC 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 148, 388
BseGI GGATG 2 cut(s) 81, 121
BseJI GATNNNNATC 1 cut(s) 377
BseMI GCAATG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 358
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 199, 388
BslFI GGGAC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 202
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 4, 372
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 2 cut(s) 112, 246
BspANI GGCC 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 6, 72
BspMAI CTGCAG 1 cut(s) 171
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 198
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 148, 388
BssMI GATC 2 cut(s) 4, 372
BssT1I CCWWGG 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 44, 264
BstBI TTCGAA 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 2 cut(s) 81, 121
BstKTI GATC 2 cut(s) 7, 375
BstMBI GATC 2 cut(s) 4, 372
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 2 cut(s) 81, 121
BtsIMutI CAGTG 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 201
CviAII CATG 3 cut(s) 149, 287, 467
CviJI RGCY 5 cut(s) 79, 202, 285, 398, 506
CviKI_1 RGCY 5 cut(s) 79, 202, 285, 398, 506
DpnI GATC 2 cut(s) 6, 374
DpnII GATC 2 cut(s) 4, 372
Eam1104I CTCTTC 2 cut(s) 44, 264
EarI CTCTTC 2 cut(s) 44, 264
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 3 cut(s) 152, 290, 470
FaiI YATR 6 cut(s) 47, 131, 150, 288, 468, 511
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 148, 286, 466
FauI CCCGC 1 cut(s) 105
FbaI TGATCA 1 cut(s) 372
FokI GGATG 2 cut(s) 68, 128
FriOI GRGCYC 1 cut(s) 81
FspBI CTAG 2 cut(s) 62, 399
HaeIII GGCC 1 cut(s) 202
HapII CCGG 2 cut(s) 199, 388
Hin1II CATG 3 cut(s) 152, 290, 470
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 3 cut(s) 227, 242, 378
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 2 cut(s) 199, 388
HphI GGTGA 2 cut(s) 187, 268
Hpy166II GTNNAC 2 cut(s) 259, 412
Hpy188I TCNGA 3 cut(s) 52, 241, 377
Hpy188III TCNNGA 2 cut(s) 214, 295
Hpy8I GTNNAC 2 cut(s) 259, 412
HpyAV CCTTC 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 8 cut(s) 119, 158, 169, 188, 290, 419, 444, 479
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 3 cut(s) 152, 290, 470
Ksp22I TGATCA 1 cut(s) 372
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 2 cut(s) 4, 372
LpnPI CCDG 6 cut(s) 87, 212, 237, 339, 401, 445
LweI GCATC 4 cut(s) 106, 207, 288, 466
MaeI CTAG 2 cut(s) 62, 399
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 6, 374
MboI GATC 2 cut(s) 4, 372
MboII GAAGA 3 cut(s) 31, 281, 448
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 2 cut(s) 471, 483
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 3 cut(s) 18, 96, 312
MseI TTAA 2 cut(s) 206, 411
MspI CCGG 2 cut(s) 199, 388
MspR9I CCNGG 1 cut(s) 389
NciI CCSGG 1 cut(s) 389
NcoI CCATGG 1 cut(s) 148
NdeII GATC 2 cut(s) 4, 372
NlaIII CATG 3 cut(s) 152, 290, 470
NlaIV GGNNCC 2 cut(s) 6, 72
NmuCI GTSAC 1 cut(s) 427
NspV TTCGAA 1 cut(s) 95
PfeI GAWTC 2 cut(s) 242, 378
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 6, 72
PspPI GGNCC 1 cut(s) 201
PstI CTGCAG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 4
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 206, 411
Sau3AI GATC 2 cut(s) 4, 372
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 81
SetI ASST 7 cut(s) 81, 212, 226, 311, 400, 464, 508
SfaNI GCATC 4 cut(s) 106, 207, 288, 466
SfcI CTRYAG 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 95
Sse9I AATT 2 cut(s) 471, 483
SsiI CCGC 2 cut(s) 112, 246
SspMI CTAG 2 cut(s) 62, 399
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 95
TasI AATT 2 cut(s) 471, 483
TfiI GAWTC 2 cut(s) 242, 378
Tru1I TTAA 2 cut(s) 206, 411
Tru9I TTAA 2 cut(s) 206, 411
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 1 cut(s) 109
XspI CTAG 2 cut(s) 62, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.