AT5G17610

Domain of unknown function (DUF4787)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013556
Physical Location & Seq
Forward (+)
5803892 .. 5805589
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17610.1

Sequence Viewer

Length: 366 bp
ATGGAAATTTCCCAAGCTCGTTCAAGCTTCGTTTGTCTTCTTCTTCTGTTACTCTCCATGTGTTTCGTTCCCTGCGTCTTTTCCAAATCTCCTCGTCCTATCTCCGATGTGGAGATCAGGCAGAAGAAGAGCGAATGCTACGGTGATATAGAGAGTGGGTTATGGGGTTGGCAATGCAAATCTTCTGCAATAGCGAAAGAGAATTGTGCGCTGCGATGCCTTTCTCCGGTTTGCTATCAACTCATTTATGAGAGTGATCCGCTTGAAGAAGGTGAAAAAGATTTGATTAGGAGCCAAGAGTACAAGTATTGTATGTACAAGTCATCACTCGGGGAAAGCTTAGAGGGTGTTCGAGGCATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4787

Protein Analysis

121

Amino Acids

13.74

Weight (kDa)

5.22

Isoelectric Point (pI)

64.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4787 PF16029 36 - 104 2.2e-24 Domain of unknown function (DUF4787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17610
fragaria_vesca FvH4_7g07210 FvH4_7g07210 FvH4_7g07210
malus_domestica MD02G1238400.v1.1 MD07G1078200.v1.1
prunus_persica Prupe.2G100000_v2.0.a1 Prupe.2G100000_v2.0.a1
pyrus_communis pycom02g20380 pycom07g06190
rosa_chinensis RchiOBHm_Chr1g0337311
rosa_multiflora Rmu_sc0006824.1_g000023 Rmu_sc0022984.1_g000002
rosa_roxburghii Rroxscaffold_4G00314550
rosa_rugosa Rorug01G0134300.1
rosa_samantha Rh1AG153400 Rh1CG144300
rosa_wichuraiana Rw1G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 2 cut(s) 302, 317
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 2 cut(s) 24, 266
AluBI AGCT 3 cut(s) 17, 27, 339
AluI AGCT 3 cut(s) 17, 27, 339
AlwI GGATC 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 6
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 2 cut(s) 155, 284
AvaI CYCGRG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 198
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 293
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 226
BsmI GAATGC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 2 cut(s) 114, 256
BspACI CCGC 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 293
BspPI GGATC 1 cut(s) 251
BspQI GCTCTTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 315
BssMI GATC 2 cut(s) 114, 256
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 340
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 117, 259
BstMBI GATC 2 cut(s) 114, 256
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 229
CfoI GCGC 1 cut(s) 211
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 301, 316
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 17, 27, 294, 339
CviKI_1 RGCY 4 cut(s) 17, 27, 294, 339
CviQI GTAC 2 cut(s) 301, 316
DdeI CTNAG 1 cut(s) 340
DpnI GATC 2 cut(s) 116, 258
DpnII GATC 2 cut(s) 114, 256
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 329
FaeI CATG 1 cut(s) 61
FaiI YATR 5 cut(s) 59, 149, 163, 249, 314
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 212
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 212
HapII CCGG 1 cut(s) 227
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HindIII AAGCTT 2 cut(s) 25, 337
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 155, 284
Hpy188I TCNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 177, 188
HpyF3I CTNAG 1 cut(s) 340
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 2 cut(s) 114, 256
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 3 cut(s) 85, 103, 240
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 48
MalI GATC 2 cut(s) 116, 258
MboI GATC 2 cut(s) 114, 256
MboII GAAGA 7 cut(s) 29, 32, 35, 136, 139, 174, 278
MluCI AATT 2 cut(s) 6, 202
MnlI CCTC 3 cut(s) 102, 337, 347
MspI CCGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 140
NdeII GATC 2 cut(s) 114, 256
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 293
RsaI GTAC 2 cut(s) 302, 317
RsaNI GTAC 2 cut(s) 301, 316
SapI GCTCTTC 1 cut(s) 122
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 2 cut(s) 114, 256
SetI ASST 4 cut(s) 19, 29, 274, 341
SfaNI GCATC 1 cut(s) 206
Sse9I AATT 2 cut(s) 6, 202
SsiI CCGC 1 cut(s) 260
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 352
TasI AATT 2 cut(s) 6, 202
TatI WGTACW 2 cut(s) 300, 315
TseI GCWGC 1 cut(s) 211
XapI RAATTY 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.