FvH4_7g07210

Protein SCAI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013556
Physical Location & Seq
Forward (+)
7163796 .. 7167757
3962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07210.t1

Sequence Viewer

Length: 381 bp
ATGGTGTGTCGAAATTCCTCCTCTCCTTCTTCTCCGCTCAGAATCCAAATCCTCTTAGTACTGTCGTTGCTCTTCTCTCCCATAGTTCTCGCCAAGTCCCGTCGCCCAATCACCGACATTGAGACAAGGCAGAAGAAGGCCCAATGCTATGCTGATATTGAGAGTGGCTTGTGGGGCTGGCAGTGCAAGTCAAGTATGATAGCCAAGGAGAACTGTGTTTTGAAATGCCTCTCTCCAACTTGTTATGAGATTGTCTATGAGAGTGATCCACTTGAAGAAGGAGAGAAAGATCTTGTTAGGGGACAAGAATTCAAGTACTGCATGCATAAGTTATCTTTGGGGGAGAGCCTTGAGGGTATTAAGGGCTCCTTTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAI

Protein Analysis

127

Amino Acids

14.26

Weight (kDa)

7.52

Isoelectric Point (pI)

64.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4787 PF16029 39 - 107 5.3e-25 Domain of unknown function (DUF4787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17610
fragaria_vesca FvH4_7g07210 FvH4_7g07210 FvH4_7g07210
malus_domestica MD02G1238400.v1.1 MD07G1078200.v1.1
prunus_persica Prupe.2G100000_v2.0.a1 Prupe.2G100000_v2.0.a1
pyrus_communis pycom02g20380 pycom07g06190
rosa_chinensis RchiOBHm_Chr1g0337311
rosa_multiflora Rmu_sc0006824.1_g000023 Rmu_sc0022984.1_g000002
rosa_roxburghii Rroxscaffold_4G00314550
rosa_rugosa Rorug01G0134300.1
rosa_samantha Rh1AG153400 Rh1CG144300
rosa_wichuraiana Rw1G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 37
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 2 cut(s) 13, 308
AfaI GTAC 2 cut(s) 60, 317
AgsI TTSAA 3 cut(s) 223, 275, 313
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 138
ApoI RAATTY 2 cut(s) 13, 308
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 103
BanII GRGCYC 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 116
BglII AGATCT 1 cut(s) 289
BmcAI AGTACT 2 cut(s) 60, 317
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 10
BshFI GGCC 1 cut(s) 140
BslFI GGGAC 2 cut(s) 82, 315
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 82, 315
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 2 cut(s) 265, 289
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 265, 289
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 63, 215
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 179, 323
BstDEI CTNAG 2 cut(s) 38, 55
BstKTI GATC 2 cut(s) 268, 292
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 265, 289
BstMWI GCNNNNNNNGC 2 cut(s) 174, 183
BstNSI RCATGY 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 179, 323
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 59, 316
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 140, 168, 177, 203, 348, 366
CviKI_1 RGCY 6 cut(s) 140, 168, 177, 203, 348, 366
CviQI GTAC 2 cut(s) 59, 316
DdeI CTNAG 2 cut(s) 38, 55
DpnI GATC 2 cut(s) 267, 291
DpnII GATC 2 cut(s) 265, 289
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 325
FaiI YATR 7 cut(s) 83, 150, 197, 246, 258, 323, 327
FalI AAGNNNNNCTT 1 cut(s) 353
FaqI GGGAC 2 cut(s) 82, 315
FatI CATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 368
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 1 cut(s) 325
HinfI GANTC 1 cut(s) 42
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 3 cut(s) 36, 130, 272
HpyCH4III ACNGT 2 cut(s) 63, 215
HpyCH4V TGCA 3 cut(s) 186, 321, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 183
HpyF3I CTNAG 2 cut(s) 38, 55
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 2 cut(s) 265, 289
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 1 cut(s) 163
MalI GATC 2 cut(s) 267, 291
MbiI CCGCTC 1 cut(s) 37
MboI GATC 2 cut(s) 265, 289
MboII GAAGA 4 cut(s) 21, 64, 145, 287
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 3 cut(s) 13, 308, 373
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 5 cut(s) 28, 31, 62, 239, 346
Mph1103I ATGCAT 1 cut(s) 327
MseI TTAA 3 cut(s) 360, 372, 379
MwoI GCNNNNNNNGC 2 cut(s) 174, 183
NdeII GATC 2 cut(s) 265, 289
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 327
NspI RCATGY 1 cut(s) 325
PaeI GCATGC 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 60, 317
RsaNI GTAC 2 cut(s) 59, 316
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 360, 372, 379
Sau3AI GATC 2 cut(s) 265, 289
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 2 cut(s) 60, 317
SduI GDGCHC 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SphI GCATGC 1 cut(s) 325
Sse9I AATT 3 cut(s) 13, 308, 373
SsiI CCGC 1 cut(s) 35
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 63, 215
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 13, 308, 373
TatI WGTACW 2 cut(s) 58, 315
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 3 cut(s) 360, 372, 379
Tru9I TTAA 3 cut(s) 360, 372, 379
TscAI CASTG 1 cut(s) 188
TspRI CASTG 1 cut(s) 188
XapI RAATTY 2 cut(s) 13, 308
XceI RCATGY 1 cut(s) 325
ZrmI AGTACT 2 cut(s) 60, 317
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.