MD02G1238400.v1.1

Domain of unknown function (DUF4787)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013556
Physical Location & Seq
Reverse (-)
28628841 .. 28632017
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1238400.v1.1.491

Sequence Viewer

Length: 381 bp
ATGACAAATCAGAATTCTTCATCTTCTTCCCCGCTCATAATTCTAATTCTTCTACTAGTATTCTTGCTCTTCTCTCCCACCAATACAAATGCCAAGTCTCATCGCCCAATCTCTGATATGGAGACAAGGCAGAAGAAGAGCCAGTGTTATGCTGACATTGAGAGCGGACTGTGGGGTTGGCATTGCAAGTCTTCTTTGATAGCAAAAGAGAATTGTGCTTTGCGATGCCTTTCTCCGACTTGCTATGAGCTTATCTACGAGAGTGATCCGCTCGAAGAAGGTGAAAAAGATATGATTAGGGGCCAAGAGTTCAAGTATTGTATGCATAAGTTATCTTTGGGGGAGAGCCTTGAGGGTATCAAGGGTACATTTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4787

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

5.9

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4787 PF16029 39 - 107 9.9e-25 Domain of unknown function (DUF4787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17610
fragaria_vesca FvH4_7g07210 FvH4_7g07210 FvH4_7g07210
malus_domestica MD02G1238400.v1.1 MD07G1078200.v1.1
prunus_persica Prupe.2G100000_v2.0.a1 Prupe.2G100000_v2.0.a1
pyrus_communis pycom02g20380 pycom07g06190
rosa_chinensis RchiOBHm_Chr1g0337311
rosa_multiflora Rmu_sc0006824.1_g000023 Rmu_sc0022984.1_g000002
rosa_roxburghii Rroxscaffold_4G00314550
rosa_rugosa Rorug01G0134300.1
rosa_samantha Rh1AG153400 Rh1CG144300
rosa_wichuraiana Rw1G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 34, 165, 271
AciI CCGC 3 cut(s) 32, 165, 269
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 1 cut(s) 313
AhlI ACTAGT 1 cut(s) 55
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw26I GTCTC 2 cut(s) 102, 116
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 102, 116
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 302
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 142
BshFI GGCC 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 102, 116
BsnI GGCC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 3 cut(s) 32, 165, 269
BspANI GGCC 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 302
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 2 cut(s) 74, 131
BsrBI CCGCTC 3 cut(s) 34, 165, 271
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 74, 131
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 2 cut(s) 102, 116
BstMBI GATC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 303
BtgZI GCGATG 2 cut(s) 86, 238
BtsIMutI CAGTG 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 366
CviJI RGCY 4 cut(s) 141, 250, 303, 348
CviKI_1 RGCY 4 cut(s) 141, 250, 303, 348
CviQI GTAC 1 cut(s) 366
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 74, 131
EarI CTCTTC 2 cut(s) 74, 131
EcoRI GAATTC 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 327
FaiI YATR 7 cut(s) 38, 119, 150, 246, 293, 323, 327
FauI CCCGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 303
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 3 cut(s) 12, 115, 237
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 186, 325
Kzo9I GATC 1 cut(s) 265
LguI GCTCTTC 2 cut(s) 74, 131
LpnPI CCDG 1 cut(s) 155
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 56
MalI GATC 1 cut(s) 267
MbiI CCGCTC 3 cut(s) 34, 165, 271
MboI GATC 1 cut(s) 265
MboII GAAGA 9 cut(s) 9, 15, 18, 41, 61, 145, 148, 183, 287
MluCI AATT 5 cut(s) 13, 39, 45, 211, 373
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 1 cut(s) 346
Mph1103I ATGCAT 1 cut(s) 327
MseI TTAA 2 cut(s) 372, 379
NdeII GATC 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 327
PciSI GCTCTTC 2 cut(s) 74, 131
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 1 cut(s) 301
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SapI GCTCTTC 2 cut(s) 74, 131
SaqAI TTAA 2 cut(s) 372, 379
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 301
SetI ASST 2 cut(s) 252, 283
SfaNI GCATC 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 5 cut(s) 13, 39, 45, 211, 373
SsiI CCGC 3 cut(s) 32, 165, 269
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 273
TasI AATT 5 cut(s) 13, 39, 45, 211, 373
Tru1I TTAA 2 cut(s) 372, 379
Tru9I TTAA 2 cut(s) 372, 379
TscAI CASTG 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 149
XapI RAATTY 1 cut(s) 13
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.