Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011452

Physical Location & Seq

Genomic Coordinates Forward (+)

5980769 .. 5983135

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGGACGAGATCCAAATAGCTTCAATCCTCAAATCATCTGAGCTTTTTCCGATTCCACAAGGCGTCAAGCTTTCGTATGGAACAGCTGGATTCAGAGGCGATGCAAAGTTATTGGAATCAACTGTGTATAGAGTTGGGATTCTCTCAGCTCTCCGATCACTTAAGCTTGGATCAGCCACCGTCGGGCTTATGATCACAGCTTCGCATAACAAAGTCTCTGACAATGGCATTAAAGTTTCAGATCCATCTGGTTTTATGCTTTCTCAGGAATGGGAGCCTTTTGCAGATCAGATCGCTAACGCATCTTCTCCTGAAGAACTCGTTTCGTTGATTAGAAAATTCATGGAGAAGGAAGAGATTGCAATCGGAGAGAATAATAAAGGTGCAGAGGTTTGGTTGGGAAGAGATACTAGACCTAGTGGTGAATCACTTCTCAGAGCTGGTGAGATCGGAGTTGGTTCAATTTTGGGATCTGTTGCGATTGACATTGGGATTTTGACAACTCCGCAATTGCATTGGATGGTTAGAGCTAAGAATAAAGGTCTTAAGGCAACTGAGAATGATTACTTTGAGAATCTATCTACTTCGTTTAGGTGTTTGATTGATTTGATTCCAAGCAGTGGAAATGATAAGTTAGAGATTAGCAAATTGCTTGTAGATGGTGCTAATGGTGTAGGTGGACAGAAGATTGAGAAGCTAAGAGGGTCTTTGAGTAATTTAGATGTTGAGATTCGTAACACAGGGAGAGATGGTGGTGTGCTTAATGAAGGTGTAGGTGCTGATTTTGTGCAGAAAGAAAAGGTTTTGCCTGTAGGATTTGGGTTTAAGGATGTTGGGATGAGGTGTGCGAGTTTGGATGGTGATGCAGATCGATTGGTTTACTTTTACATTCCTTCAGATTCTTCTGAAAAGGTTGAGCTACTTGACGGTGATAAGATTCTGTCTTTGTTTGCTCTCTTCATCAAAGAGCAACTAAATGCTCTGGAGGATGATGAAGAAAGGAAGCAGTCTCGTCTTGGTGTTGTGCAGACAGCTTACGCGAATGGTGCGTCTACTGATTACCTAAAGCATTTGGGTTTAGATGTTGTTTTTGCTAAAACTGGAGTTAAGCATTTACACGAGAAAGCAGCAGAGTTTGATATTGGAATCTACTTTGAAGCTAATGGCCACGGGACTATTCTCTTCTCGGAATCTTTCCTATCTTGGTTAGTTTCCAAACAAAAGGATCTTACGGCTAAAGGTCAGGGTGGTTCTGAAGAGCACAAAGCTGTTTCTAGACTAATGGCGGTGAGTAATCTGATTAACCAAGCGGTAGGTGATGCTCTAAGTGGAGTGCTCTTGGTTGAAGTGATTCTACAACACCTGGGATGGTCGATAGAGAAGTGGAATGAGCTATACAAGGACCTTCCTAGCAGGCAGATCAAGGTCGAAGTTCCAGATAGAACAGCGGTTGTGACCACAAGCGAAGAAACCGAGGCTCTGAGACCTATGGGGATTCAAGATGCTATTAATTCTGAAATCAAGAAGTACTCGCGTGGCAGAGCTTTTATAAGGCCATCGGGTACAGAAGATGTGGTGAGAGTATATGCAGAGGCTTCCACTCAAGAAGATGCTGATTCTTTGGCTAATTCTGTGGCTCAGCTCGTCAAAAGCTTCCTTGGTTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006040 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009987 GO:0018130 GO:0019438 GO:0030054 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055044 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_III PGM_PMM_IV

Protein Analysis

556

Amino Acids

60.39

Weight (kDa)

5.14

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGM_PMM_I	PF02878	55 - 92	6.9e-07	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AMG1_II	PF21405	184 - 293	1.7e-09	Phosphoacetylglucosamine mutase AMG1, domain II
AMG1_III	PF21404	309 - 457	2.8e-54	Phosphoacetylglucosamine mutase AMG1, domain III
PGM_PMM_III	PF02880	309 - 393	1.2e-06	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
PGM_PMM_IV	PF00408	474 - 547	1.1e-11	Phosphoglucomutase/phosphomannomutase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18070
fragaria_vesca	FvH4_5g21180
malus_domestica	MD06G1040100.v1.1 MD16G1269200.v1.1
prunus_persica	Prupe.5G046300_v2.0.a1 Prupe.5G046300_v2.0.a1
pyrus_communis	pycom06g03350
rosa_chinensis	RchiOBHm_Chr7g0208321
rosa_laevigata	RLG00000003227
rosa_multiflora	Rmu_sc0000841.1_g000011 Rmu_sc0000841.1_g000016 Rmu_sc0007869.1_g000029
rosa_roxburghii	Rroxscaffold_3G00250570
rosa_rugosa	Rorug07G0103300 Rorug07G0103400
rosa_samantha	Rh7AG237700 Rh7BG233300 Rh7CG253400 Rh7DG243700
rosa_wichuraiana	Rw7G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1550
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	1052
AccII	CGCG	2 cut(s)	1040, 1534
AciI	CCGC	4 cut(s)	506, 1286, 1310, 1448
AclWI	GGATC	5 cut(s)	4, 178, 236, 478, 1233
AcoI	YGGCCR	1 cut(s)	1165
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	3 cut(s)	333, 879, 1275
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	1529, 1564
AfiI	CCNNNNNNNGG	2 cut(s)	183, 620
AflII	CTTAAG	2 cut(s)	161, 545
AgsI	TTSAA	6 cut(s)	24, 462, 1157, 1346, 1499, 1665
AjnI	CCWGG	1 cut(s)	1362
Alw21I	GWGCWC	2 cut(s)	1263, 1338
Alw26I	GTCTC	3 cut(s)	220, 1014, 1477
AlwI	GGATC	5 cut(s)	4, 178, 236, 478, 1233
AoxI	GGCC	2 cut(s)	1165, 1553
ApeKI	GCWGC	1 cut(s)	1127
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	1034, 1066
AseI	ATTAAT	1 cut(s)	1509
Asp700I	GAANNNNTTC	2 cut(s)	429, 1350
AspS9I	GGNCC	1 cut(s)	1402
AsuHPI	GGTGA	7 cut(s)	434, 455, 872, 941, 1300, 1328, 1588
AvaII	GGWCC	1 cut(s)	1402
BalI	TGGCCA	1 cut(s)	1167
BarI	GAAGNNNNNNTAC	2 cut(s)	1338, 1370
BauI	CACGAG	1 cut(s)	1118
Bbv12I	GWGCWC	2 cut(s)	1263, 1338
BbvI	GCAGC	1 cut(s)	1139
BccI	CCATC	7 cut(s)	253, 514, 653, 743, 851, 1362, 1564
BceAI	ACGGC	1 cut(s)	1248
BciT130I	CCWGG	1 cut(s)	1364
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	3 cut(s)	220, 1014, 1477
BfaI	CTAG	4 cut(s)	411, 417, 1275, 1410
BfmI	CTRYAG	1 cut(s)	810
BfrI	CTTAAG	2 cut(s)	161, 545
BisI	GCNGC	1 cut(s)	1128
BlpI	GCTNAGC	1 cut(s)	1638
BlsI	GCNGC	1 cut(s)	1129
BmcAI	AGTACT	1 cut(s)	1529
Bme1390I	CCNGG	1 cut(s)	1364
Bme18I	GGWCC	1 cut(s)	1402
BmgT120I	GGNCC	1 cut(s)	1402
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	1364
BmsI	GCATC	6 cut(s)	91, 311, 853, 1309, 1492, 1600
BpmI	CTGGAG	2 cut(s)	1004, 1122
Bpu1102I	GCTNAGC	1 cut(s)	1638
BpuEI	CTTGAG	1 cut(s)	1587
Bsa29I	ATCGAT	1 cut(s)	871
BsaBI	GATNNNNATC	2 cut(s)	362, 867
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	1477
BsaJI	CCNNGG	4 cut(s)	1168, 1363, 1473, 1657
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 620
Bse1I	ACTGG	1 cut(s)	1105
Bse8I	GATNNNNATC	2 cut(s)	362, 867
BseBI	CCWGG	1 cut(s)	1364
BseCI	ATCGAT	1 cut(s)	871
BseDI	CCNNGG	4 cut(s)	1168, 1363, 1473, 1657
BseGI	GGATG	6 cut(s)	525, 835, 843, 862, 994, 1373
BseJI	GATNNNNATC	2 cut(s)	362, 867
BseLI	CCNNNNNNNGG	2 cut(s)	183, 620
BseMII	CTCAG	7 cut(s)	30, 159, 278, 448, 546, 1472, 1652
BseNI	ACTGG	1 cut(s)	1105
BseXI	GCAGC	1 cut(s)	1139
BsgI	GTGCAG	3 cut(s)	405, 809, 1046
Bsh1236I	CGCG	2 cut(s)	1040, 1534
BshFI	GGCC	2 cut(s)	1167, 1555
BshVI	ATCGAT	1 cut(s)	871
BsiHKAI	GWGCWC	2 cut(s)	1263, 1338
BslFI	GGGAC	1 cut(s)	1186
BslI	CCNNNNNNNGG	2 cut(s)	183, 620
BsmAI	GTCTC	3 cut(s)	220, 1014, 1477
BsmFI	GGGAC	1 cut(s)	1186
BsnI	GGCC	2 cut(s)	1167, 1555
Bso31I	GGTCTC	1 cut(s)	1477
Bsp1286I	GDGCHC	2 cut(s)	1263, 1338
Bsp1720I	GCTNAGC	1 cut(s)	1638
BspACI	CCGC	4 cut(s)	506, 1286, 1310, 1448
BspANI	GGCC	2 cut(s)	1167, 1555
BspCNI	CTCAG	7 cut(s)	31, 158, 277, 447, 547, 1473, 1651
BspDI	ATCGAT	1 cut(s)	871
BspFNI	CGCG	2 cut(s)	1040, 1534
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	5 cut(s)	4, 178, 236, 478, 1233
BspQI	GCTCTTC	1 cut(s)	1251
BspTI	CTTAAG	2 cut(s)	161, 545
BspTNI	GGTCTC	1 cut(s)	1477
BsrI	ACTGG	1 cut(s)	1105
BssECI	CCNNGG	4 cut(s)	1168, 1363, 1473, 1657
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	1118
BssT1I	CCWWGG	1 cut(s)	1657
Bst2BI	CACGAG	1 cut(s)	1118
Bst2UI	CCWGG	1 cut(s)	1364
Bst4CI	ACNGT	3 cut(s)	124, 181, 929
Bst6I	CTCTTC	5 cut(s)	348, 397, 962, 1187, 1251
BstACI	GRCGYC	1 cut(s)	63
BstAFI	CTTAAG	2 cut(s)	161, 545
BstC8I	GCNNGC	1 cut(s)	1415
BstDSI	CCRYGG	1 cut(s)	1168
BstF5I	GGATG	6 cut(s)	525, 835, 843, 862, 994, 1373
BstFNI	CGCG	2 cut(s)	1040, 1534
BstMAI	GTCTC	3 cut(s)	220, 1014, 1477
BstMWI	GCNNNNNNNGC	1 cut(s)	1046
BstNI	CCWGG	1 cut(s)	1364
BstSCI	CCNGG	1 cut(s)	1362
BstSFI	CTRYAG	1 cut(s)	810
BstUI	CGCG	2 cut(s)	1040, 1534
BstV1I	GCAGC	1 cut(s)	1139
BstX2I	RGATCY	4 cut(s)	9, 241, 470, 1225
BstYI	RGATCY	4 cut(s)	9, 241, 470, 1225
Bsu15I	ATCGAT	1 cut(s)	871
BsuRI	GGCC	2 cut(s)	1167, 1555
BsuTUI	ATCGAT	1 cut(s)	871
BtgI	CCRYGG	1 cut(s)	1168
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	6 cut(s)	525, 835, 843, 862, 994, 1373
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	1415
Cfr13I	GGNCC	1 cut(s)	1402
ClaI	ATCGAT	1 cut(s)	871
CseI	GACGC	2 cut(s)	52, 1038
Csp6I	GTAC	2 cut(s)	1528, 1563
CviAII	CATG	1 cut(s)	343
CviQI	GTAC	2 cut(s)	1528, 1563
EaeI	YGGCCR	1 cut(s)	1165
Eam1104I	CTCTTC	5 cut(s)	348, 397, 962, 1187, 1251
EarI	CTCTTC	5 cut(s)	348, 397, 962, 1187, 1251
Eco130I	CCWWGG	1 cut(s)	1657
Eco31I	GGTCTC	1 cut(s)	1477
Eco47I	GGWCC	1 cut(s)	1402
Eco57I	CTGAAG	3 cut(s)	333, 879, 1275
EcoO109I	RGGNCCY	1 cut(s)	1402
EcoRII	CCWGG	1 cut(s)	1362
EcoT14I	CCWWGG	1 cut(s)	1657
ErhI	CCWWGG	1 cut(s)	1657
FaeI	CATG	1 cut(s)	346
FalI	AAGNNNNNCTT	2 cut(s)	691, 723
FaqI	GGGAC	1 cut(s)	1186
FatI	CATG	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	1052
Fnu4HI	GCNGC	1 cut(s)	1128
FokI	GGATG	6 cut(s)	532, 842, 850, 869, 1001, 1380
Fsp4HI	GCNGC	1 cut(s)	1128
FspBI	CTAG	4 cut(s)	411, 417, 1275, 1410
GluI	GCNGC	1 cut(s)	1128
GsuI	CTGGAG	2 cut(s)	1004, 1122
HaeIII	GGCC	2 cut(s)	1167, 1555
HgaI	GACGC	2 cut(s)	52, 1038
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	346
HindIII	AAGCTT	3 cut(s)	68, 164, 1651
HphI	GGTGA	7 cut(s)	434, 455, 872, 941, 1300, 1328, 1588
Hpy166II	GTNNAC	3 cut(s)	680, 880, 1053
Hpy188III	TCNNGA	8 cut(s)	266, 311, 983, 1275, 1436, 1499, 1522, 1604
Hpy8I	GTNNAC	3 cut(s)	680, 880, 1053
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	343, 761, 903, 1415
HpyCH4III	ACNGT	3 cut(s)	124, 181, 929
HpyCH4V	TGCA	9 cut(s)	104, 284, 362, 386, 514, 790, 866, 1027, 1589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1046
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	192
LguI	GCTCTTC	1 cut(s)	1251
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	1139
LweI	GCATC	6 cut(s)	91, 311, 853, 1309, 1492, 1600
MaeI	CTAG	4 cut(s)	411, 417, 1275, 1410
MaeIII	GTNAC	2 cut(s)	734, 1453
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	4 cut(s)	9, 241, 470, 1225
MhlI	GDGCHC	2 cut(s)	1263, 1338
MlsI	TGGCCA	1 cut(s)	1167
MluCI	AATT	7 cut(s)	338, 462, 509, 647, 715, 1510, 1627
MluNI	TGGCCA	1 cut(s)	1167
MnlI	CCTC	8 cut(s)	38, 89, 382, 695, 834, 979, 1468, 1585
Mox20I	TGGCCA	1 cut(s)	1167
MroXI	GAANNNNTTC	2 cut(s)	429, 1350
MscI	TGGCCA	1 cut(s)	1167
MseI	TTAA	8 cut(s)	162, 231, 546, 762, 825, 1107, 1302, 1509
Msp20I	TGGCCA	1 cut(s)	1167
MspA1I	CMGCKG	2 cut(s)	86, 1448
MspCI	CTTAAG	2 cut(s)	161, 545
MspR9I	CCNGG	1 cut(s)	1364
MunI	CAATTG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	1364
MvnI	CGCG	2 cut(s)	1040, 1534
MwoI	GCNNNNNNNGC	1 cut(s)	1046
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	1453
PciSI	GCTCTTC	1 cut(s)	1251
PdmI	GAANNNNTTC	2 cut(s)	429, 1350
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	1 cut(s)	1129
PpuMI	RGGWCCY	1 cut(s)	1402
PshBI	ATTAAT	1 cut(s)	1509
PsiI	TTATAA	1 cut(s)	1550
Psp5II	RGGWCCY	1 cut(s)	1402
Psp6I	CCWGG	1 cut(s)	1362
PspGI	CCWGG	1 cut(s)	1362
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	1402
PspPPI	RGGWCCY	1 cut(s)	1402
PsuI	RGATCY	4 cut(s)	9, 241, 470, 1225
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	1529, 1564
RsaNI	GTAC	2 cut(s)	1528, 1563
SapI	GCTCTTC	1 cut(s)	1251
SaqAI	TTAA	8 cut(s)	162, 231, 546, 762, 825, 1107, 1302, 1509
SatI	GCNGC	1 cut(s)	1128
Sau96I	GGNCC	1 cut(s)	1402
ScaI	AGTACT	1 cut(s)	1529
ScrFI	CCNGG	1 cut(s)	1364
SduI	GDGCHC	2 cut(s)	1263, 1338
SfaNI	GCATC	6 cut(s)	91, 311, 853, 1309, 1492, 1600
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	1 cut(s)	1402
SmlI	CTYRAG	3 cut(s)	161, 545, 1602
SmoI	CTYRAG	3 cut(s)	161, 545, 1602
Sse9I	AATT	7 cut(s)	338, 462, 509, 647, 715, 1510, 1627
SsiI	CCGC	4 cut(s)	506, 1286, 1310, 1448
SspMI	CTAG	4 cut(s)	411, 417, 1275, 1410
StyD4I	CCNGG	1 cut(s)	1362
StyI	CCWWGG	1 cut(s)	1657
TaaI	ACNGT	3 cut(s)	124, 181, 929
TaqI	TCGA	3 cut(s)	871, 1373, 1428
TasI	AATT	7 cut(s)	338, 462, 509, 647, 715, 1510, 1627
TatI	WGTACW	1 cut(s)	1527
Tru1I	TTAA	8 cut(s)	162, 231, 546, 762, 825, 1107, 1302, 1509
Tru9I	TTAA	8 cut(s)	162, 231, 546, 762, 825, 1107, 1302, 1509
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	1453
TseI	GCWGC	1 cut(s)	1127
Tsp45I	GTSAC	1 cut(s)	1453
TspDTI	ATGAA	4 cut(s)	331, 780, 949, 1008
TspRI	CASTG	1 cut(s)	625
Van91I	CCANNNNNTGG	1 cut(s)	620
Vha464I	CTTAAG	2 cut(s)	161, 545
VpaK11BI	GGWCC	1 cut(s)	1402
VspI	ATTAAT	1 cut(s)	1509
XapI	RAATTY	1 cut(s)	338
XbaI	TCTAGA	1 cut(s)	1274
XmiI	GTMKAC	1 cut(s)	1052
XmnI	GAANNNNTTC	2 cut(s)	429, 1350
XspI	CTAG	4 cut(s)	411, 417, 1275, 1410
ZrmI	AGTACT	1 cut(s)	1529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.