Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011452

Physical Location & Seq

Genomic Coordinates Reverse (-)

23220048 .. 23226166

Gene Structure 6119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG237700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGATCACAGCCTCTCACAACAAAATCTCTGATAATGGAATCAAAGTTGCTGACCCTAGTGGTGGAATGCTTTCTCAAGATTGGGAGCCCTTTGCGGATACACTTGCCAATGCCTGTGATCCCCAACAACTCGTTCAGTTGATAACTGAATTTGTGGAAAATGAAAAAATCACACTTAATGGAGCTAAGTCGGTGGAGATTTTACTGGCAAGAGATACAAGACCCAGTGGTGAATCTCTGCTTGAAGCTGCTAAACAGGGAATCAGTTCCATTATTGGAGCAGTTGCCCTTGACATGGGAATTTTAACAACCCCGACACTCCATTGGATGGTTCGTGCTAGAAATAAGGGTGCCAAAGCATCGGAAATGGATTACTTTGAGCAGCTGTCCAGCTCATTCAGGTGCTTGGTTGATCTGATTCCTAGTGGATCTAACACCAGAAATGAGGCAGACAAGTTGGTTGTAGATGGGGCTAATGGTGTTGGCGGAGAAAAACTCGAAATCTTGAAGAAGATGTTGACTGGTTTGGTTATTGATGTTCGGAACTCTGGAAAAGAAGGAGGTGTACTCAATGATGGAGTTGGTGCTGATTATGTGCAGAAAGAGAAGGTTGCTCCGTCTGGTTTTGGTTCACAAGATGTCGGGATAAGGTGTTGTAGCTTGGATGGTGATGCTGATCGACTTGTATATTTTATTGTGCCATCTACAAGTAGTATTAAGATCGAACTTGTTGATGGGGACAAGATATTATCGTTGTTTGCTGTATTCATCAAGGAGCAACTAAGCATCTTGAATAAGAAAAGAGATGTTAATGTGAATGATGATTATCAATGCTGTCTTGGTATTGTGCAAACGGCCTATGCAAATGGAGCATCCACAGATTATCTTAAACAGTTAGGCCTGGAAGTCATTTTCACTCCTACAGGTGTGAAGTACCTGCATGAGAAAGCAGCACAGTATGATATTGGAATATATTTTGAGGCAAATGGCCATGGCACCATCTTGTTCTCAGAAAAATTCTTGTGTTGGTTAGAGGCCAAGAATACTGAGTTTTCTGATGTAGCTAAAGGTTCGGAACCACATAAGGCAGCTATGAGACTCTTGGCGGTCACAAAATTGATTAACCCGGCTGTTGGAGATGCTTTGAGTGGGATGCTCTTGGTTGAGGCCATTTTACAACATATGGGATGGTCAATAGAGAAATGGAATGAGCTTTATCATGATCTACCAAGTAGGCAGCTTAAGGTCAAAGTTGTAGACAGAACTGCTGTTGTCACAGCAAATGCAGAAACTGTGGTTGCGAAGCCCCCTGGCATTCAAGAAGCTATTAACGCTGAAACTGGTAAGCAGTGTATGAGACCCTTTTTGTTCCCTTGTGTCTGGTATACTGCACATCATCTTTTCTCTGCAGAATATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006040 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009987 GO:0018130 GO:0019438 GO:0030054 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055044 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_III PGM_PMM_IV

Protein Analysis

473

Amino Acids

51.51

Weight (kDa)

5.28

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMG1_II	PF21405	120 - 229	1.5e-07	Phosphoacetylglucosamine mutase AMG1, domain II
AMG1_III	PF21404	245 - 397	3e-52	Phosphoacetylglucosamine mutase AMG1, domain III
PGM_PMM_III	PF02880	245 - 334	7.9e-07	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18070
fragaria_vesca	FvH4_5g21180
malus_domestica	MD06G1040100.v1.1 MD16G1269200.v1.1
prunus_persica	Prupe.5G046300_v2.0.a1 Prupe.5G046300_v2.0.a1
pyrus_communis	pycom06g03350
rosa_chinensis	RchiOBHm_Chr7g0208321
rosa_laevigata	RLG00000003227
rosa_multiflora	Rmu_sc0000841.1_g000011 Rmu_sc0000841.1_g000016 Rmu_sc0007869.1_g000029
rosa_roxburghii	Rroxscaffold_3G00250570
rosa_rugosa	Rorug07G0103300 Rorug07G0103400
rosa_samantha	Rh7AG237700 Rh7BG233300 Rh7CG253400 Rh7DG243700
rosa_wichuraiana	Rw7G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	945
AccB1I	GGYRCC	2 cut(s)	350, 995
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	2 cut(s)	1257, 1385
AciI	CCGC	3 cut(s)	95, 486, 1106
AclWI	GGATC	2 cut(s)	113, 436
AcoI	YGGCCR	1 cut(s)	988
AcsI	RAATTY	3 cut(s)	149, 300, 1016
AfaI	GTAC	2 cut(s)	567, 935
AfiI	CCNNNNNNNGG	4 cut(s)	62, 295, 328, 1133
AflII	CTTAAG	1 cut(s)	1241
AgsI	TTSAA	4 cut(s)	245, 508, 793, 1319
AjnI	CCWGG	2 cut(s)	900, 1309
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
Alw26I	GTCTC	2 cut(s)	1090, 1351
AlwI	GGATC	2 cut(s)	113, 436
AlwNI	CAGNNNCTG	1 cut(s)	1292
AoxI	GGCC	5 cut(s)	855, 898, 988, 1035, 1167
ApeKI	GCWGC	5 cut(s)	248, 382, 950, 1088, 1237
ApoI	RAATTY	3 cut(s)	149, 300, 1016
Asp700I	GAANNNNTTC	2 cut(s)	70, 265
AsuC2I	CCSGG	1 cut(s)	1127
AsuHPI	GGTGA	2 cut(s)	242, 680
BalI	TGGCCA	1 cut(s)	990
BanI	GGYRCC	2 cut(s)	350, 995
BanII	GRGCYC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbvI	GCAGC	5 cut(s)	235, 394, 962, 1100, 1249
BccI	CCATC	8 cut(s)	322, 461, 569, 659, 709, 728, 1007, 1182
BceAI	ACGGC	1 cut(s)	870
BciT130I	CCWGG	2 cut(s)	902, 1311
BciVI	GTATCC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	1127
BcoDI	GTCTC	2 cut(s)	1090, 1351
BfaI	CTAG	3 cut(s)	57, 339, 423
BfmI	CTRYAG	2 cut(s)	921, 1407
BfrI	CTTAAG	1 cut(s)	1241
BfuAI	ACCTGC	1 cut(s)	945
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	5 cut(s)	249, 383, 951, 1089, 1238
BlsI	GCNGC	5 cut(s)	250, 384, 952, 1090, 1239
Bme1390I	CCNGG	3 cut(s)	902, 1127, 1311
BmiI	GGNNCC	4 cut(s)	87, 352, 997, 1077
BmrFI	CCNGG	3 cut(s)	902, 1127, 1311
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	6 cut(s)	368, 661, 795, 881, 1129, 1143
BmuI	ACTGGG	1 cut(s)	219
BplI	GAGNNNNNCTC	4 cut(s)	480, 512, 552, 584
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	1127
BsaBI	GATNNNNATC	2 cut(s)	675, 825
BsaI	GGTCTC	1 cut(s)	1351
BsaJI	CCNNGG	2 cut(s)	991, 1309
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 295, 328, 1133
Bse1I	ACTGG	4 cut(s)	210, 225, 526, 1345
Bse8I	GATNNNNATC	2 cut(s)	675, 825
BseBI	CCWGG	2 cut(s)	902, 1311
BseDI	CCNNGG	2 cut(s)	991, 1309
BseGI	GGATG	5 cut(s)	333, 670, 872, 1158, 1193
BseJI	GATNNNNATC	2 cut(s)	675, 825
BseLI	CCNNNNNNNGG	4 cut(s)	62, 295, 328, 1133
BseMII	CTCAG	2 cut(s)	1023, 1038
BseNI	ACTGG	4 cut(s)	210, 225, 526, 1345
BseXI	GCAGC	5 cut(s)	235, 394, 962, 1100, 1249
BsgI	GTGCAG	2 cut(s)	617, 1374
BshFI	GGCC	5 cut(s)	857, 900, 990, 1037, 1169
BshNI	GGYRCC	2 cut(s)	350, 995
BsiSI	CCGG	1 cut(s)	1127
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	4 cut(s)	62, 295, 328, 1133
BsmAI	GTCTC	2 cut(s)	1090, 1351
BsmFI	GGGAC	1 cut(s)	752
BsmI	GAATGC	2 cut(s)	72, 1314
BsnI	GGCC	5 cut(s)	857, 900, 990, 1037, 1169
Bso31I	GGTCTC	1 cut(s)	1351
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	7 cut(s)	3, 118, 412, 428, 676, 720, 1222
Bsp19I	CCATGG	1 cut(s)	991
BspACI	CCGC	3 cut(s)	95, 486, 1106
BspANI	GGCC	5 cut(s)	857, 900, 990, 1037, 1169
BspCNI	CTCAG	2 cut(s)	1022, 1039
BspHI	TCATGA	1 cut(s)	1219
BspLI	GGNNCC	4 cut(s)	87, 352, 997, 1077
BspMAI	CTGCAG	1 cut(s)	1411
BspMI	ACCTGC	1 cut(s)	945
BspPI	GGATC	2 cut(s)	113, 436
BspT107I	GGYRCC	2 cut(s)	350, 995
BspTI	CTTAAG	1 cut(s)	1241
BspTNI	GGTCTC	1 cut(s)	1351
BsrI	ACTGG	4 cut(s)	210, 225, 526, 1345
BssECI	CCNNGG	2 cut(s)	991, 1309
BssMI	GATC	7 cut(s)	3, 118, 412, 428, 676, 720, 1222
BssNAI	GTATAC	1 cut(s)	1386
BssT1I	CCWWGG	1 cut(s)	991
Bst1107I	GTATAC	1 cut(s)	1386
Bst2UI	CCWGG	2 cut(s)	902, 1311
Bst4CI	ACNGT	3 cut(s)	894, 957, 1294
BstAFI	CTTAAG	1 cut(s)	1241
BstDEI	CTNAG	4 cut(s)	186, 782, 1009, 1047
BstDSI	CCRYGG	1 cut(s)	991
BstF5I	GGATG	5 cut(s)	333, 670, 872, 1158, 1193
BstKTI	GATC	7 cut(s)	6, 121, 415, 431, 679, 723, 1225
BstMAI	GTCTC	2 cut(s)	1090, 1351
BstMBI	GATC	7 cut(s)	3, 118, 412, 428, 676, 720, 1222
BstMWI	GCNNNNNNNGC	2 cut(s)	869, 1331
BstNI	CCWGG	2 cut(s)	902, 1311
BstSCI	CCNGG	3 cut(s)	900, 1125, 1309
BstSFI	CTRYAG	2 cut(s)	921, 1407
BstV1I	GCAGC	5 cut(s)	235, 394, 962, 1100, 1249
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BstZ17I	GTATAC	1 cut(s)	1386
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	5 cut(s)	857, 900, 990, 1037, 1169
BtgI	CCRYGG	1 cut(s)	991
BtsCI	GGATG	5 cut(s)	333, 670, 872, 1158, 1193
BtsI	GCAGTG	1 cut(s)	1355
BtsIMutI	CAGTG	2 cut(s)	232, 1355
BveI	ACCTGC	1 cut(s)	945
CaiI	CAGNNNCTG	1 cut(s)	1292
CciI	TCATGA	1 cut(s)	1219
Csp6I	GTAC	2 cut(s)	566, 934
CviAII	CATG	4 cut(s)	295, 941, 992, 1220
CviQI	GTAC	2 cut(s)	566, 934
DdeI	CTNAG	4 cut(s)	186, 782, 1009, 1047
DpnI	GATC	7 cut(s)	5, 120, 414, 430, 678, 722, 1224
DpnII	GATC	7 cut(s)	3, 118, 412, 428, 676, 720, 1222
EaeI	YGGCCR	1 cut(s)	988
EciI	GGCGGA	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	991
Eco147I	AGGCCT	1 cut(s)	900
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	1351
EcoRII	CCWGG	2 cut(s)	900, 1309
EcoT14I	CCWWGG	1 cut(s)	991
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	991
FaeI	CATG	4 cut(s)	298, 944, 995, 1223
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	4 cut(s)	294, 940, 991, 1219
FauNDI	CATATG	1 cut(s)	1182
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	1257, 1385
Fnu4HI	GCNGC	5 cut(s)	249, 383, 951, 1089, 1238
FokI	GGATG	5 cut(s)	340, 677, 859, 1165, 1200
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	5 cut(s)	249, 383, 951, 1089, 1238
FspBI	CTAG	3 cut(s)	57, 339, 423
GluI	GCNGC	5 cut(s)	249, 383, 951, 1089, 1238
HaeIII	GGCC	5 cut(s)	857, 900, 990, 1037, 1169
HapII	CCGG	1 cut(s)	1127
Hin1II	CATG	4 cut(s)	298, 944, 995, 1223
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	5 cut(s)	39, 233, 261, 418, 1098
HpaII	CCGG	1 cut(s)	1127
HphI	GGTGA	2 cut(s)	242, 680
Hpy166II	GTNNAC	5 cut(s)	519, 566, 632, 1258, 1386
Hpy188I	TCNGA	7 cut(s)	31, 364, 417, 543, 1012, 1057, 1075
Hpy188III	TCNNGA	7 cut(s)	77, 505, 549, 643, 790, 1220, 1319
Hpy8I	GTNNAC	5 cut(s)	519, 566, 632, 1258, 1386
HpyAV	CCTTC	2 cut(s)	551, 601
HpyCH4III	ACNGT	3 cut(s)	894, 957, 1294
HpyCH4V	TGCA	7 cut(s)	598, 850, 863, 940, 1286, 1391, 1409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	869, 1331
HpyF3I	CTNAG	4 cut(s)	186, 782, 1009, 1047
Hsp92II	CATG	4 cut(s)	298, 944, 995, 1223
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	7 cut(s)	3, 118, 412, 428, 676, 720, 1222
LmnI	GCTCC	6 cut(s)	85, 182, 278, 619, 775, 869
Lsp1109I	GCAGC	5 cut(s)	235, 394, 962, 1100, 1249
LweI	GCATC	6 cut(s)	368, 661, 795, 881, 1129, 1143
MaeI	CTAG	3 cut(s)	57, 339, 423
MaeIII	GTNAC	2 cut(s)	1108, 1273
MalI	GATC	7 cut(s)	5, 120, 414, 430, 678, 722, 1224
MboI	GATC	7 cut(s)	3, 118, 412, 428, 676, 720, 1222
MboII	GAAGA	2 cut(s)	520, 523
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	990
MluCI	AATT	4 cut(s)	149, 300, 1016, 1115
MluNI	TGGCCA	1 cut(s)	990
MlyI	GAGTC	1 cut(s)	1092
MmeI	TCCRAC	1 cut(s)	1114
MnlI	CCTC	6 cut(s)	22, 439, 554, 973, 1027, 1159
Mox20I	TGGCCA	1 cut(s)	990
MroXI	GAANNNNTTC	2 cut(s)	70, 265
MscI	TGGCCA	1 cut(s)	990
MseI	TTAA	8 cut(s)	177, 305, 717, 810, 888, 1122, 1242, 1329
MslI	CAYNNNNRTG	1 cut(s)	400
Msp20I	TGGCCA	1 cut(s)	990
MspA1I	CMGCKG	1 cut(s)	385
MspCI	CTTAAG	1 cut(s)	1241
MspI	CCGG	1 cut(s)	1127
MspR9I	CCNGG	3 cut(s)	902, 1127, 1311
Mva1269I	GAATGC	2 cut(s)	72, 1314
MvaI	CCWGG	2 cut(s)	902, 1311
MwoI	GCNNNNNNNGC	2 cut(s)	869, 1331
NciI	CCSGG	1 cut(s)	1127
NcoI	CCATGG	1 cut(s)	991
NdeI	CATATG	1 cut(s)	1182
NdeII	GATC	7 cut(s)	3, 118, 412, 428, 676, 720, 1222
NlaIII	CATG	4 cut(s)	298, 944, 995, 1223
NlaIV	GGNNCC	4 cut(s)	87, 352, 997, 1077
NmuCI	GTSAC	2 cut(s)	1108, 1273
PagI	TCATGA	1 cut(s)	1219
PceI	AGGCCT	1 cut(s)	900
PctI	GAATGC	2 cut(s)	72, 1314
PdmI	GAANNNNTTC	2 cut(s)	70, 265
PfeI	GAWTC	4 cut(s)	39, 233, 261, 418
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	5 cut(s)	250, 384, 952, 1090, 1239
PleI	GAGTC	1 cut(s)	1092
PpsI	GAGTC	1 cut(s)	1092
Psp6I	CCWGG	2 cut(s)	900, 1309
PspGI	CCWGG	2 cut(s)	900, 1309
PspN4I	GGNNCC	4 cut(s)	87, 352, 997, 1077
PstI	CTGCAG	1 cut(s)	1411
PstNI	CAGNNNCTG	1 cut(s)	1292
PsuI	RGATCY	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	567, 935
RsaNI	GTAC	2 cut(s)	566, 934
RseI	CAYNNNNRTG	1 cut(s)	400
SaqAI	TTAA	8 cut(s)	177, 305, 717, 810, 888, 1122, 1242, 1329
SatI	GCNGC	5 cut(s)	249, 383, 951, 1089, 1238
Sau3AI	GATC	7 cut(s)	3, 118, 412, 428, 676, 720, 1222
SchI	GAGTC	1 cut(s)	1092
ScrFI	CCNGG	3 cut(s)	902, 1127, 1311
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	6 cut(s)	368, 661, 795, 881, 1129, 1143
SfcI	CTRYAG	2 cut(s)	921, 1407
SmiMI	CAYNNNNRTG	1 cut(s)	400
SmlI	CTYRAG	2 cut(s)	75, 1241
SmoI	CTYRAG	2 cut(s)	75, 1241
Sse9I	AATT	4 cut(s)	149, 300, 1016, 1115
SseBI	AGGCCT	1 cut(s)	900
SsiI	CCGC	3 cut(s)	95, 486, 1106
SspMI	CTAG	3 cut(s)	57, 339, 423
StuI	AGGCCT	1 cut(s)	900
StyD4I	CCNGG	3 cut(s)	900, 1125, 1309
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	3 cut(s)	894, 957, 1294
TaqI	TCGA	3 cut(s)	498, 679, 723
TasI	AATT	4 cut(s)	149, 300, 1016, 1115
TatI	WGTACW	1 cut(s)	565
TfiI	GAWTC	4 cut(s)	39, 233, 261, 418
Tru1I	TTAA	8 cut(s)	177, 305, 717, 810, 888, 1122, 1242, 1329
Tru9I	TTAA	8 cut(s)	177, 305, 717, 810, 888, 1122, 1242, 1329
TscAI	CASTG	2 cut(s)	232, 1355
TseFI	GTSAC	2 cut(s)	1108, 1273
TseI	GCWGC	5 cut(s)	248, 382, 950, 1088, 1237
Tsp45I	GTSAC	2 cut(s)	1108, 1273
TspDTI	ATGAA	2 cut(s)	177, 757
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	2 cut(s)	232, 1355
Van91I	CCANNNNNTGG	1 cut(s)	328
Vha464I	CTTAAG	1 cut(s)	1241
XapI	RAATTY	3 cut(s)	149, 300, 1016
XmiI	GTMKAC	2 cut(s)	1257, 1385
XmnI	GAANNNNTTC	2 cut(s)	70, 265
XspI	CTAG	3 cut(s)	57, 339, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.