Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000841.1

Orthogroup ID

OG0011452

Physical Location & Seq

Genomic Coordinates Forward (+)

53473 .. 56659

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000841.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggattactttgagcagctgtccagtggatctaacaccatcaatgaggcagacaagttggttgtagatggggctaatggtgttggcggagaaaagctcggaatcttgaagaagatgttgagtggtttggctattgatgttcggaactctggaaaagaaggagttggtgctgattatgtgcagaaagagaagattgctccgtctgggtttggttcacaaaaattggtgtgcaatggtccatgcattgctcttggggtgtcatgtaggtgttgtagcttggatggtgatgctgatcgacttctatattttattgtgccatctacaagtagtagtaagattgaacttgttgatggggacaagatattatcattgtttgctgtattcatcaaggagcaattaagcatcttgaataagaaaagagatgttaatgtgaatgatggttatcaatgcggtcttggtattgtgcaaacggcctatgcaaatggagcatccacagattatcttaaacagttaggcctggaagtcattttcactcctacaggtgtgaagtacctgcatgagaaagcagcacagtatgatattgggatatattttgaggcaaatggccatggtaccatcttgttctcagaacaattcttttgttggttagaggacaagattactgagttttctgatgtagctaaaggttcggaaccacataaggcagctatgagactcttggcagtcacaaaattgattaaccaggctgttggagatgcttttagtgggatgctcttggtcaaagttgtagacagaactgctgttgtcacagcaaatgcagaaactgtggttgcgaagtccccctggcaaatgcaggactgcttcaagcacagtgtctacaatgaccaagagagatcaatgtctgaagtaggcttcattttcttgctccaaggttttggtcatcagtacatatcagtatcccacggcattttgctccaagattttggtgccaaaaatgttttcttaggctattgtgtatatcgggaagagtctttacttggaaactcaaggaatagctggtgtcagtcaccacagtttactcttctccaagacagcaccacctctgccagaagtagatgcatgcggagcaggaggaagttgaaaggattagatgaactttacttgcgggaagctcaacttcaagttcggcacttgaatgtaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006040 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009987 GO:0018130 GO:0019438 GO:0030054 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055044 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_III PGM_PMM_IV

Protein Analysis

401

Amino Acids

44.15

Weight (kDa)

6.41

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18070
fragaria_vesca	FvH4_5g21180
malus_domestica	MD06G1040100.v1.1 MD16G1269200.v1.1
prunus_persica	Prupe.5G046300_v2.0.a1 Prupe.5G046300_v2.0.a1
pyrus_communis	pycom06g03350
rosa_chinensis	RchiOBHm_Chr7g0208321
rosa_laevigata	RLG00000003227
rosa_multiflora	Rmu_sc0000841.1_g000011 Rmu_sc0000841.1_g000016 Rmu_sc0007869.1_g000029
rosa_roxburghii	Rroxscaffold_3G00250570
rosa_rugosa	Rorug07G0103300 Rorug07G0103400
rosa_samantha	Rh7AG237700 Rh7BG233300 Rh7CG253400 Rh7DG243700
rosa_wichuraiana	Rw7G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	561
Acc65I	GGTACC	1 cut(s)	611
AccB1I	GGYRCC	2 cut(s)	611, 986
AccI	GTMKAC	2 cut(s)	789, 876
AciI	CCGC	4 cut(s)	87, 450, 1123, 1165
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	924
AfaI	GTAC	3 cut(s)	551, 613, 947
AgsI	TTSAA	7 cut(s)	109, 341, 409, 865, 1141, 1181, 1195
AjnI	CCWGG	3 cut(s)	516, 741, 842
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	7 cut(s)	19, 97, 276, 680, 707, 1056, 1172
AluI	AGCT	7 cut(s)	19, 97, 276, 680, 707, 1056, 1172
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	3 cut(s)	471, 514, 604
ApeKI	GCWGC	3 cut(s)	16, 566, 704
Asp718I	GGTACC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	296, 1059
AvaII	GGWCC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	606
BanI	GGYRCC	2 cut(s)	611, 986
BarI	GAAGNNNNNNTAC	2 cut(s)	1017, 1049
BbvI	GCAGC	3 cut(s)	28, 578, 716
BccI	CCATC	7 cut(s)	47, 62, 275, 325, 344, 431, 623
BceAI	ACGGC	2 cut(s)	486, 979
BciT130I	CCWGG	3 cut(s)	518, 743, 844
BciVI	GTATCC	1 cut(s)	967
BcoDI	GTCTC	1 cut(s)	706
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	967
BisI	GCNGC	3 cut(s)	17, 567, 705
BlsI	GCNGC	3 cut(s)	18, 568, 706
Bme1390I	CCNGG	3 cut(s)	518, 743, 844
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	3 cut(s)	613, 693, 988
BmrFI	CCNGG	3 cut(s)	518, 743, 844
BmsI	GCATC	6 cut(s)	277, 411, 497, 745, 759, 1106
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpuEI	CTTGAG	1 cut(s)	1030
BsaBI	GATNNNNATC	2 cut(s)	291, 441
BsaJI	CCNNGG	4 cut(s)	607, 842, 928, 961
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	2 cut(s)	238, 243
Bse8I	GATNNNNATC	2 cut(s)	291, 441
BseBI	CCWGG	3 cut(s)	518, 743, 844
BseDI	CCNNGG	4 cut(s)	607, 842, 928, 961
BseGI	GGATG	3 cut(s)	286, 488, 774
BseJI	GATNNNNATC	2 cut(s)	291, 441
BseMI	GCAATG	2 cut(s)	238, 243
BseMII	CTCAG	2 cut(s)	639, 654
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	28, 578, 716
BsgI	GTGCAG	1 cut(s)	200
BshFI	GGCC	3 cut(s)	473, 516, 606
BshNI	GGYRCC	2 cut(s)	611, 986
BslFI	GGGAC	2 cut(s)	368, 823
BsmAI	GTCTC	1 cut(s)	706
BsmFI	GGGAC	2 cut(s)	368, 823
BsnI	GGCC	3 cut(s)	473, 516, 606
Bsp143I	GATC	3 cut(s)	29, 292, 893
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	4 cut(s)	87, 450, 1123, 1165
BspANI	GGCC	3 cut(s)	473, 516, 606
BspCNI	CTCAG	2 cut(s)	638, 655
BspLI	GGNNCC	3 cut(s)	613, 693, 988
BspMI	ACCTGC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	2 cut(s)	611, 986
BsrDI	GCAATG	2 cut(s)	238, 243
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	4 cut(s)	607, 842, 928, 961
BssMI	GATC	3 cut(s)	29, 292, 893
BssT1I	CCWWGG	2 cut(s)	607, 928
Bst2UI	CCWGG	3 cut(s)	518, 743, 844
Bst4CI	ACNGT	5 cut(s)	510, 573, 826, 872, 1074
Bst6I	CTCTTC	2 cut(s)	1020, 1086
BstC8I	GCNNGC	1 cut(s)	1121
BstDEI	CTNAG	3 cut(s)	625, 663, 1003
BstDSI	CCRYGG	2 cut(s)	607, 961
BstF5I	GGATG	3 cut(s)	286, 488, 774
BstKTI	GATC	3 cut(s)	32, 295, 896
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	3 cut(s)	29, 292, 893
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 1125
BstNI	CCWGG	3 cut(s)	518, 743, 844
BstNSI	RCATGY	1 cut(s)	1123
BstSCI	CCNGG	3 cut(s)	516, 741, 842
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	28, 578, 716
BstX2I	RGATCY	1 cut(s)	29
BstXI	CCANNNNNNTGG	3 cut(s)	749, 935, 983
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	967
BsuRI	GGCC	3 cut(s)	473, 516, 606
BtgI	CCRYGG	2 cut(s)	607, 961
BtsCI	GGATG	3 cut(s)	286, 488, 774
BtsIMutI	CAGTG	2 cut(s)	31, 877
BveI	ACCTGC	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	1121
CaiI	CAGNNNCTG	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	550, 612, 946
CviAII	CATG	5 cut(s)	240, 261, 557, 608, 1120
CviQI	GTAC	3 cut(s)	550, 612, 946
DdeI	CTNAG	3 cut(s)	625, 663, 1003
DpnI	GATC	3 cut(s)	31, 294, 895
DpnII	GATC	3 cut(s)	29, 292, 893
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	1020, 1086
EarI	CTCTTC	2 cut(s)	1020, 1086
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	607, 928
Eco147I	AGGCCT	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	924
EcoRII	CCWGG	3 cut(s)	516, 741, 842
EcoT14I	CCWWGG	2 cut(s)	607, 928
EcoT22I	ATGCAT	2 cut(s)	245, 1121
ErhI	CCWWGG	2 cut(s)	607, 928
FaeI	CATG	5 cut(s)	243, 264, 560, 611, 1123
FalI	AAGNNNNNCTT	2 cut(s)	1161, 1193
FaqI	GGGAC	2 cut(s)	368, 823
FatI	CATG	5 cut(s)	239, 260, 556, 607, 1119
FauI	CCCGC	1 cut(s)	1158
FblI	GTMKAC	2 cut(s)	789, 876
Fnu4HI	GCNGC	3 cut(s)	17, 567, 705
FokI	GGATG	3 cut(s)	293, 475, 781
Fsp4HI	GCNGC	3 cut(s)	17, 567, 705
GluI	GCNGC	3 cut(s)	17, 567, 705
HaeIII	GGCC	3 cut(s)	473, 516, 606
Hin1II	CATG	5 cut(s)	243, 264, 560, 611, 1123
HinfI	GANTC	3 cut(s)	102, 714, 1028
HphI	GGTGA	2 cut(s)	296, 1059
Hpy166II	GTNNAC	4 cut(s)	215, 790, 877, 1077
Hpy188I	TCNGA	6 cut(s)	101, 144, 628, 673, 691, 904
Hpy188III	TCNNGA	4 cut(s)	106, 150, 406, 1022
Hpy8I	GTNNAC	4 cut(s)	215, 790, 877, 1077
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	5 cut(s)	510, 573, 826, 872, 1074
HpyCH4V	TGCA	9 cut(s)	181, 231, 243, 466, 479, 556, 818, 853, 1119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 1125
HpyF3I	CTNAG	3 cut(s)	625, 663, 1003
Hsp92II	CATG	5 cut(s)	243, 264, 560, 611, 1123
KpnI	GGTACC	1 cut(s)	615
Kzo9I	GATC	3 cut(s)	29, 292, 893
LmnI	GCTCC	6 cut(s)	202, 391, 485, 930, 978, 1125
Lsp1109I	GCAGC	3 cut(s)	28, 578, 716
LweI	GCATC	6 cut(s)	277, 411, 497, 745, 759, 1106
MaeIII	GTNAC	3 cut(s)	724, 805, 1065
MalI	GATC	3 cut(s)	31, 294, 895
MboI	GATC	3 cut(s)	29, 292, 893
MboII	GAAGA	5 cut(s)	121, 124, 202, 1037, 1073
MflI	RGATCY	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	4 cut(s)	221, 395, 632, 731
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	708, 1037
MmeI	TCCRAC	1 cut(s)	730
MnlI	CCTC	5 cut(s)	40, 589, 643, 1111, 1125
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	2 cut(s)	245, 1121
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	4 cut(s)	398, 426, 504, 738
MslI	CAYNNNNRTG	2 cut(s)	265, 1194
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	19
MspR9I	CCNGG	3 cut(s)	518, 743, 844
MvaI	CCWGG	3 cut(s)	518, 743, 844
MwoI	GCNNNNNNNGC	2 cut(s)	485, 1125
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	3 cut(s)	29, 292, 893
NlaIII	CATG	5 cut(s)	243, 264, 560, 611, 1123
NlaIV	GGNNCC	3 cut(s)	613, 693, 988
NmuCI	GTSAC	3 cut(s)	724, 805, 1065
NsiI	ATGCAT	2 cut(s)	245, 1121
NspI	RCATGY	1 cut(s)	1123
PaeI	GCATGC	1 cut(s)	1123
PceI	AGGCCT	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	18, 568, 706
PleI	GAGTC	2 cut(s)	708, 1036
PpsI	GAGTC	2 cut(s)	708, 1036
Psp6I	CCWGG	3 cut(s)	516, 741, 842
PspGI	CCWGG	3 cut(s)	516, 741, 842
PspN4I	GGNNCC	3 cut(s)	613, 693, 988
PspPI	GGNCC	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	3 cut(s)	551, 613, 947
RsaNI	GTAC	3 cut(s)	550, 612, 946
RseI	CAYNNNNRTG	2 cut(s)	265, 1194
SaqAI	TTAA	4 cut(s)	398, 426, 504, 738
SatI	GCNGC	3 cut(s)	17, 567, 705
Sau3AI	GATC	3 cut(s)	29, 292, 893
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	2 cut(s)	708, 1037
ScrFI	CCNGG	3 cut(s)	518, 743, 844
SfaNI	GCATC	6 cut(s)	277, 411, 497, 745, 759, 1106
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	265, 1194
SmlI	CTYRAG	1 cut(s)	1045
SmoI	CTYRAG	1 cut(s)	1045
SphI	GCATGC	1 cut(s)	1123
Sse9I	AATT	4 cut(s)	221, 395, 632, 731
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	4 cut(s)	87, 450, 1123, 1165
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	516, 741, 842
StyI	CCWWGG	2 cut(s)	607, 928
TaaI	ACNGT	5 cut(s)	510, 573, 826, 872, 1074
TaqI	TCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	221, 395, 632, 731
TatI	WGTACW	1 cut(s)	945
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	4 cut(s)	398, 426, 504, 738
Tru9I	TTAA	4 cut(s)	398, 426, 504, 738
TscAI	CASTG	2 cut(s)	31, 877
TseFI	GTSAC	3 cut(s)	724, 805, 1065
TseI	GCWGC	3 cut(s)	16, 566, 704
Tsp45I	GTSAC	3 cut(s)	724, 805, 1065
TspDTI	ATGAA	3 cut(s)	373, 904, 1167
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	31, 877
VpaK11BI	GGWCC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	1123
XmiI	GTMKAC	2 cut(s)	789, 876
Zsp2I	ATGCAT	2 cut(s)	245, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.