AT5G18930

S-adenosylmethionine decarboxylase proenzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016174
Physical Location & Seq
Reverse (-)
6311725 .. 6313372
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18930.1

Sequence Viewer

Length: 1044 bp
ATGGCAGTGTCTGGGTTCGAGGGTTTCGAGAAAAGACTCGAACTTCGGTTCTTCGACGATGACAAACCAATCACCAAAAACCCTATGGGACTCCGTCTAATAGACTTCGAATCTTTAGACCAAGTCTTAAACGAAGTGCAGTGCACAGTGGTCTCCGCCGTAGCGAATCGTAGCTTCGACGCTTACGTTCTCTCAGAGTCAAGCCTCTTTGTATACCCAACCAAAATCATCATCAAAACATGTGGAACCACGCAACTCCTCAAATCAATCCGACCGTTGATCCATCTCGCACGTAACCTCGGCCTCACGTTACGCGCGTGTCGCTACTCGCGTGGCAGCTTCATCTTCCCTAAAGCTCAGCCTTTCCCTTACACAAGCTTCAAAGACGAAGTCATCGTCGTCGAAGAAAGCCTCCCAAAATCTCTCTGTTACCGCAAAGCCTCTGTTATGACGCCTTCTAATAACCCATCACGTGCTTGGCACGTGTTCACCGCAAGCGCTGACGTGGAATCCGACGAACATGTCGTCGTAGTCGAAGTATGTATGACGGAGCTGGACCGAGTCAACGCTCGAAGCTTCTTTAAACGGAAAGGTGACGAGAAAAACAACAGCGATTCCGCCGGGAAAGAGATGACGCGGCTCAGTGGTATCGATAACATAAACGCAAACGCTTATATATGCGATTTCGCGTTTGATCCTTGCGGTTACTCGATGAACGGCGTCGACGGTGACCGTTACTCAACTATCCACGTAACGCCTGAAGACGGTTTTAGCTACGCGAGCTTCGAGTGTGGTTTGTCTCTCTACGACAACGGTCACGAAGATATCTCTGAGGTGTTAAGCCGGGCCATTGATGTTTTCCGTCCAAGTGACGTCTCGATCGCCACCACTTACGGCGGCGAAGATTACAACCACGAGGTGACTAAGCGCGTGGAGCGTGTGTTAGCTAAGAAGCTTGATCTTAAGTGTCGGAGCCGTCTTATGGATGAGTTTCCAGGCTCCGGAACCGTCGTTTATCAGTCCTTCACGCCTCGTCGGAAATAG

Protein Analysis

347

Amino Acids

39.04

Weight (kDa)

5.8

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 5 - 342 1.1e-104 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18930
fragaria_vesca FvH4_4g13980
malus_domestica MD13G1178800.v1.1 MD16G1180000.v1.1
prunus_persica Prupe.1G147600_v2.0.a1
pyrus_communis pycom16g15110
rosa_chinensis RchiOBHm_Chr4g0419671
rosa_laevigata RLG00000007803
rosa_multiflora Rmu_sc0003265.1_g000008
rosa_roxburghii Rroxscaffold_5G00362510
rosa_rugosa Rorug04G0159600
rosa_samantha Rh4BG223000 Rh4CG234300 Rh4DG220000
rosa_wichuraiana Rw4G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
AatII GACGTC 1 cut(s) 876
AccI GTMKAC 2 cut(s) 213, 723
AccII CGCG 7 cut(s) 315, 317, 331, 637, 689, 779, 930
AccIII TCCGGA 1 cut(s) 1001
AciI CCGC 7 cut(s) 156, 433, 492, 618, 637, 702, 897
AclWI GGATC 2 cut(s) 274, 689
AcuI CTGAAG 1 cut(s) 780
AcvI CACGTG 2 cut(s) 473, 484
AcyI GRCGYC 3 cut(s) 452, 720, 873
AdeI CACNNNGTG 1 cut(s) 919
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 3 cut(s) 764, 982, 1001
AflII CTTAAG 1 cut(s) 962
AflIII ACRYGT 3 cut(s) 239, 483, 520
AgsI TTSAA 1 cut(s) 382
AjiI CACGTC 1 cut(s) 505
AjnI CCWGG 1 cut(s) 994
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 3 cut(s) 157, 804, 880
Alw44I GTGCAC 1 cut(s) 142
AlwI GGATC 2 cut(s) 274, 689
AlwNI CAGNNNCTG 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 1001
Aor51HI AGCGCT 1 cut(s) 499
AoxI GGCC 2 cut(s) 301, 846
ApaLI GTGCAC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 336
ArsI GACNNNNNNTTYG 8 cut(s) 27, 59, 375, 381, 407, 413, 510, 542
AspLEI GCGC 3 cut(s) 317, 500, 930
AspS9I GGNCC 2 cut(s) 556, 846
AsuC2I CCSGG 2 cut(s) 622, 845
AsuHPI GGTGA 5 cut(s) 64, 481, 605, 740, 931
AsuII TTCGAA 1 cut(s) 108
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 146
BauI CACGAG 1 cut(s) 914
BbrPI CACGTG 2 cut(s) 473, 484
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 348
BccI CCATC 2 cut(s) 291, 475
BceAI ACGGC 4 cut(s) 143, 733, 910, 960
BciT130I CCWGG 1 cut(s) 996
BcnI CCSGG 2 cut(s) 622, 845
BcoDI GTCTC 3 cut(s) 157, 804, 880
BfoI RGCGCY 1 cut(s) 501
BfrI CTTAAG 1 cut(s) 962
BisI GCNGC 3 cut(s) 337, 638, 898
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 3 cut(s) 338, 639, 899
Bme1390I CCNGG 3 cut(s) 622, 845, 996
Bme18I GGWCC 1 cut(s) 556
BmgBI CACGTC 1 cut(s) 505
BmgT120I GGNCC 2 cut(s) 556, 846
BmiI GGNNCC 4 cut(s) 247, 974, 1000, 1006
BmrFI CCNGG 3 cut(s) 622, 845, 996
BoxI GACNNNNGTC 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 108
BpuMI CCSGG 2 cut(s) 622, 845
Bsa29I ATCGAT 1 cut(s) 651
BsaAI YACGTR 4 cut(s) 293, 473, 484, 751
BsaHI GRCGYC 3 cut(s) 452, 720, 873
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 1 cut(s) 1001
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 3 cut(s) 764, 982, 1001
BseAI TCCGGA 1 cut(s) 1001
BseBI CCWGG 1 cut(s) 996
BseCI ATCGAT 1 cut(s) 651
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 991
BseLI CCNNNNNNNGG 3 cut(s) 764, 982, 1001
BseMII CTCAG 4 cut(s) 207, 371, 655, 822
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 158
Bsh1236I CGCG 7 cut(s) 315, 317, 331, 637, 689, 779, 930
Bsh1285I CGRYCG 2 cut(s) 275, 882
BshFI GGCC 2 cut(s) 303, 848
BshVI ATCGAT 1 cut(s) 651
BsiEI CGRYCG 2 cut(s) 275, 882
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 3 cut(s) 621, 844, 1002
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 764, 982, 1001
BsmAI GTCTC 3 cut(s) 157, 804, 880
BsmBI CGTCTC 1 cut(s) 880
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 2 cut(s) 303, 848
Bso31I GGTCTC 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 1001
Bsp143I GATC 4 cut(s) 279, 694, 879, 958
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 7 cut(s) 156, 433, 492, 618, 637, 702, 897
BspANI GGCC 2 cut(s) 303, 848
BspCNI CTCAG 4 cut(s) 206, 370, 654, 823
BspDI ATCGAT 1 cut(s) 651
BspEI TCCGGA 1 cut(s) 1001
BspFNI CGCG 7 cut(s) 315, 317, 331, 637, 689, 779, 930
BspLI GGNNCC 4 cut(s) 247, 974, 1000, 1006
BspPI GGATC 2 cut(s) 274, 689
BspT104I TTCGAA 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 962
BspTNI GGTCTC 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 4 cut(s) 279, 694, 879, 958
BssNAI GTATAC 1 cut(s) 214
BssNI GRCGYC 3 cut(s) 452, 720, 873
BssSI CACGAG 1 cut(s) 914
Bst1107I GTATAC 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 914
Bst2UI CCWGG 1 cut(s) 996
Bst4CI ACNGT 7 cut(s) 148, 276, 728, 734, 767, 815, 1009
BstACI GRCGYC 3 cut(s) 452, 720, 873
BstAFI CTTAAG 1 cut(s) 962
BstBAI YACGTR 4 cut(s) 293, 473, 484, 751
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 496, 781
BstDEI CTNAG 6 cut(s) 193, 357, 641, 831, 924, 948
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 1 cut(s) 991
BstFNI CGCG 7 cut(s) 315, 317, 331, 637, 689, 779, 930
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 3 cut(s) 317, 500, 930
BstKTI GATC 4 cut(s) 282, 697, 882, 961
BstMAI GTCTC 3 cut(s) 157, 804, 880
BstMBI GATC 4 cut(s) 279, 694, 879, 958
BstMCI CGRYCG 2 cut(s) 275, 882
BstMWI GCNNNNNNNGC 3 cut(s) 321, 780, 934
BstNI CCWGG 1 cut(s) 996
BstNSI RCATGY 2 cut(s) 243, 524
BstPAI GACNNNNGTC 1 cut(s) 813
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 3 cut(s) 620, 843, 994
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 7 cut(s) 315, 317, 331, 637, 689, 779, 930
BstV1I GCAGC 1 cut(s) 348
BstV2I GAAGAC 1 cut(s) 768
BstZ17I GTATAC 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 651
BsuRI GGCC 2 cut(s) 303, 848
BsuTUI ATCGAT 1 cut(s) 651
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 1 cut(s) 991
BtsI GCAGTG 2 cut(s) 12, 146
BtsIMutI CAGTG 4 cut(s) 12, 146, 153, 649
Cac8I GCNNGC 2 cut(s) 496, 781
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 3 cut(s) 317, 500, 930
Cfr13I GGNCC 2 cut(s) 556, 846
ClaI ATCGAT 1 cut(s) 651
CseI GACGC 4 cut(s) 188, 460, 643, 709
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 2 cut(s) 240, 521
DdeI CTNAG 6 cut(s) 193, 357, 641, 831, 924, 948
DpnI GATC 4 cut(s) 281, 696, 881, 960
DpnII GATC 4 cut(s) 279, 694, 879, 958
DraI TTTAAA 1 cut(s) 583
DraIII CACNNNGTG 1 cut(s) 919
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
EciI GGCGGA 2 cut(s) 145, 607
Eco31I GGTCTC 1 cut(s) 157
Eco32I GATATC 1 cut(s) 826
Eco47I GGWCC 1 cut(s) 556
Eco47III AGCGCT 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 780
Eco72I CACGTG 2 cut(s) 473, 484
Eco91I GGTNACC 1 cut(s) 728
EcoO65I GGTNACC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 994
EcoRV GATATC 1 cut(s) 826
Esp3I CGTCTC 1 cut(s) 880
FaeI CATG 2 cut(s) 243, 524
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 239, 520
FblI GTMKAC 2 cut(s) 213, 723
Fnu4HI GCNGC 3 cut(s) 337, 638, 898
FokI GGATG 1 cut(s) 998
Fsp4HI GCNGC 3 cut(s) 337, 638, 898
GlaI GCGC 3 cut(s) 316, 499, 929
GluI GCNGC 3 cut(s) 337, 638, 898
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 2 cut(s) 303, 848
HapII CCGG 3 cut(s) 621, 844, 1002
HgaI GACGC 4 cut(s) 188, 460, 643, 709
HhaI GCGC 3 cut(s) 317, 500, 930
Hin1I GRCGYC 3 cut(s) 452, 720, 873
Hin1II CATG 2 cut(s) 243, 524
Hin6I GCGC 3 cut(s) 315, 498, 928
HinP1I GCGC 3 cut(s) 315, 498, 928
HincII GTYRAC 2 cut(s) 565, 724
HindII GTYRAC 2 cut(s) 565, 724
HindIII AAGCTT 3 cut(s) 376, 574, 953
HinfI GANTC 8 cut(s) 36, 90, 110, 166, 197, 509, 561, 614
HpaII CCGG 3 cut(s) 621, 844, 1002
HphI GGTGA 5 cut(s) 64, 481, 605, 740, 931
Hpy166II GTNNAC 5 cut(s) 144, 214, 489, 565, 724
Hpy188I TCNGA 6 cut(s) 196, 272, 514, 832, 972, 1038
Hpy188III TCNNGA 4 cut(s) 28, 818, 877, 1002
Hpy8I GTNNAC 5 cut(s) 144, 214, 489, 565, 724
HpyAV CCTTC 2 cut(s) 465, 1033
HpyCH4III ACNGT 7 cut(s) 148, 276, 728, 734, 767, 815, 1009
HpyCH4IV ACGT 8 cut(s) 186, 292, 308, 472, 483, 504, 750, 873
HpyCH4V TGCA 2 cut(s) 139, 144
HpyF10VI GCNNNNNNNGC 3 cut(s) 321, 780, 934
HpyF3I CTNAG 6 cut(s) 193, 357, 641, 831, 924, 948
HpySE526I ACGT 8 cut(s) 186, 292, 308, 472, 483, 504, 750, 873
Hsp92I GRCGYC 3 cut(s) 452, 720, 873
Hsp92II CATG 2 cut(s) 243, 524
HspAI GCGC 3 cut(s) 315, 498, 928
Kpn2I TCCGGA 1 cut(s) 1001
Kzo9I GATC 4 cut(s) 279, 694, 879, 958
LmnI GCTCC 4 cut(s) 550, 934, 972, 1004
LpnPI CCDG 7 cut(s) 539, 634, 771, 857, 981, 1008, 1015
Lsp1109I GCAGC 1 cut(s) 348
MaeII ACGT 8 cut(s) 186, 292, 308, 472, 483, 504, 750, 873
MalI GATC 4 cut(s) 281, 696, 881, 960
MboI GATC 4 cut(s) 279, 694, 879, 958
MboII GAAGA 6 cut(s) 43, 337, 416, 773, 833, 914
MhlI GDGCHC 1 cut(s) 146
MlyI GAGTC 4 cut(s) 30, 84, 206, 570
MmeI TCCRAC 4 cut(s) 295, 537, 950, 1016
MroI TCCGGA 1 cut(s) 1001
MseI TTAA 4 cut(s) 128, 582, 839, 963
MspCI CTTAAG 1 cut(s) 962
MspI CCGG 3 cut(s) 621, 844, 1002
MspR9I CCNGG 3 cut(s) 622, 845, 996
MvaI CCWGG 1 cut(s) 996
MvnI CGCG 7 cut(s) 315, 317, 331, 637, 689, 779, 930
MwoI GCNNNNNNNGC 3 cut(s) 321, 780, 934
NciI CCSGG 2 cut(s) 622, 845
NdeII GATC 4 cut(s) 279, 694, 879, 958
NlaIII CATG 2 cut(s) 243, 524
NlaIV GGNNCC 4 cut(s) 247, 974, 1000, 1006
NmeAIII GCCGAG 1 cut(s) 279
NmuCI GTSAC 5 cut(s) 593, 728, 815, 869, 919
NspI RCATGY 2 cut(s) 243, 524
NspV TTCGAA 1 cut(s) 108
PciI ACATGT 2 cut(s) 239, 520
PcsI WCGNNNNNNNCGW 9 cut(s) 24, 183, 314, 328, 393, 510, 522, 531, 783
PfeI GAWTC 4 cut(s) 110, 166, 509, 614
PflFI GACNNNGTC 4 cut(s) 93, 122, 389, 560
PkrI GCNGC 3 cut(s) 338, 639, 899
Ple19I CGATCG 1 cut(s) 882
PleI GAGTC 4 cut(s) 30, 84, 205, 569
PmaCI CACGTG 2 cut(s) 473, 484
PmlI CACGTG 2 cut(s) 473, 484
PpsI GAGTC 4 cut(s) 30, 84, 205, 569
Ppu21I YACGTR 4 cut(s) 293, 473, 484, 751
PscI ACATGT 2 cut(s) 239, 520
PshAI GACNNNNGTC 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 994
PspCI CACGTG 2 cut(s) 473, 484
PspEI GGTNACC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 994
PspN4I GGNNCC 4 cut(s) 247, 974, 1000, 1006
PspPI GGNCC 2 cut(s) 556, 846
PstNI CAGNNNCTG 1 cut(s) 11
PsyI GACNNNGTC 4 cut(s) 93, 122, 389, 560
PvuI CGATCG 1 cut(s) 882
SalI GTCGAC 1 cut(s) 722
SaqAI TTAA 4 cut(s) 128, 582, 839, 963
SatI GCNGC 3 cut(s) 337, 638, 898
Sau3AI GATC 4 cut(s) 279, 694, 879, 958
Sau96I GGNCC 2 cut(s) 556, 846
SchI GAGTC 4 cut(s) 30, 84, 206, 570
ScrFI CCNGG 3 cut(s) 622, 845, 996
SduI GDGCHC 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 108
SgrDI CGTCGACG 1 cut(s) 722
SinI GGWCC 1 cut(s) 556
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
SsiI CCGC 7 cut(s) 156, 433, 492, 618, 637, 702, 897
StyD4I CCNGG 3 cut(s) 620, 843, 994
TaaI ACNGT 7 cut(s) 148, 276, 728, 734, 767, 815, 1009
TaiI ACGT 8 cut(s) 189, 295, 311, 475, 486, 507, 753, 876
TaqII GACCGA 1 cut(s) 573
TauI GCSGC 2 cut(s) 640, 900
TfiI GAWTC 4 cut(s) 110, 166, 509, 614
Tru1I TTAA 4 cut(s) 128, 582, 839, 963
Tru9I TTAA 4 cut(s) 128, 582, 839, 963
TscAI CASTG 4 cut(s) 12, 146, 153, 649
TseFI GTSAC 5 cut(s) 593, 728, 815, 869, 919
TseI GCWGC 1 cut(s) 336
Tsp45I GTSAC 5 cut(s) 593, 728, 815, 869, 919
TspDTI ATGAA 2 cut(s) 331, 728
TspGWI ACGGA 4 cut(s) 83, 563, 601, 851
TspRI CASTG 4 cut(s) 12, 146, 153, 649
Tth111I GACNNNGTC 4 cut(s) 93, 122, 389, 560
Vha464I CTTAAG 1 cut(s) 962
VneI GTGCAC 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 556
XceI RCATGY 2 cut(s) 243, 524
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 474
XmiI GTMKAC 2 cut(s) 213, 723
ZraI GACGTC 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.