Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016174

Physical Location & Seq

Genomic Coordinates Reverse (-)

27827626 .. 27827838

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0159600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGGCACAAGTTGGAGTGGGGGCGGTTATTAGAGATGGTAATGGGGACCTTCGGATGGCCGTGGGTGAACGTATTCAAGGGAGACTTCGACCTTGTGCTGCTGAGTTGCAAGCCGCTAATTGTGGGGCTTGAAGCTATGGTGGAGTGTGGGTGGGAGCCTGAAAGCATTGAGACGGACTGTCTGGAGGCTGTGAGATTGGTGAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0032501 GO:0032502 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048731 GO:0048856 GO:0071704 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

SAM_decarbox

Protein Analysis

70

Amino Acids

7.95

Weight (kDa)

4.44

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18930
fragaria_vesca	FvH4_4g13980
malus_domestica	MD13G1178800.v1.1 MD16G1180000.v1.1
prunus_persica	Prupe.1G147600_v2.0.a1
pyrus_communis	pycom16g15110
rosa_chinensis	RchiOBHm_Chr4g0419671
rosa_laevigata	RLG00000007803
rosa_multiflora	Rmu_sc0003265.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362510
rosa_rugosa	Rorug04G0159600
rosa_samantha	Rh4BG223000 Rh4CG234300 Rh4DG220000
rosa_wichuraiana	Rw4G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	25, 116
AcoI	YGGCCR	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	79, 134
AhdI	GACNNNNNGTC	1 cut(s)	180
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	2 cut(s)	78, 167
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	31, 51
BceAI	ACGGC	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	78, 167
BisI	GCNGC	2 cut(s)	101, 116
BlsI	GCNGC	2 cut(s)	102, 117
Bme18I	GGWCC	1 cut(s)	48
BmeRI	GACNNNNNGTC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	49, 159
BpmI	CTGGAG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	2 cut(s)	78, 167
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	25, 116
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	49, 159
BssECI	CCNNGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	62
BstMAI	GTCTC	2 cut(s)	78, 167
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	48
CviJI	RGCY	6 cut(s)	61, 115, 130, 137, 160, 191
CviKI_1	RGCY	6 cut(s)	61, 115, 130, 137, 160, 191
DdeI	CTNAG	1 cut(s)	104
DriI	GACNNNNNGTC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	167
FaiI	YATR	3 cut(s)	140, 209, 211
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	101, 116
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	101, 116
GluI	GCNGC	2 cut(s)	101, 116
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	170, 174
Lsp1109I	GCAGC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	120
MnlI	CCTC	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	74
NlaIV	GGNNCC	2 cut(s)	49, 159
PdmI	GAANNNNTTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	102, 117
PpuMI	RGGWCCY	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	49, 159
PspPI	GGNCC	1 cut(s)	48
PspPPI	RGGWCCY	1 cut(s)	48
SatI	GCNGC	2 cut(s)	101, 116
Sau96I	GGNCC	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	4 cut(s)	53, 75, 96, 139
SgeI	CNNG	8 cut(s)	22, 75, 91, 107, 124, 143, 173, 197
SinI	GGWCC	1 cut(s)	48
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	25, 116
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	120
TauI	GCSGC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.