MD13G1178800.v1.1

S-adenosylmethionine decarboxylase proenzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016174
Physical Location & Seq
Reverse (-)
14898409 .. 14899476
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1178800.v1.1.491

Sequence Viewer

Length: 1068 bp
ATGGCGGTTTCTGGTTTTGAAGGGTTCGAGAAGCGTTTGGAGCTGCACTTCTCTGGGGACGACCGTAAAAATGTAAGGTCGTCGTTCGGTCTTGGTCTTCGCCTCCTTGACTTCGAGTCCTTGCAACATGTCCTACATGCCGTCCAATGCACTGTGGTCTCGGCCGTAGCCAATCACTACTTCGACGCCTACGTGTTATCCGAGTCCAGCCTCTTCGTCTACCCCACCAAGATCATCATCAAGACCTGTGGGACCACCCAGCTCCTCAAATCTATCCCTCCACTTCTCCGCCACGCGTCGCTAGATCTCGGCCTCACCCTCGTCTTCTGCCGCTACACCCGCGGCAACTTTATCTTCCCCAATGCCCAGCCTTTTCCCTACACCAACTTCCAAGACGAGGTCGTTTATTTGGAGGAATCTCTTCCCAACACTCTCTGCTACCGCAAGGCAAACGTCATGCCCTCCAAAACCCCCTCACATGCATGGAACGTGTTCTCCGCATCCAGAGAAAACACGACATGTCCTTTTGGAGAAGACGACAGCGACGGCGGACTGTTCACACTCGAAATCTGCATGACCGAGCTCGACCGCGACCTCGCCCGCAACTTCTTCCTCCGTCCCGGCACCAAATACGACGGTGACTCCGCCGGCAAAGAAATGACTGCACTCACTGGAATATCCGGAATTAACCCTCGTGCTCTGATCTGCGATTTCGCATTCGACCCCTGCGGGTACTCCATGAACGGTATCTACGGGAACCGCCACTCCACCATCCACGTTACCCCCGAAGACGGCTACAGCTACGCGAGCTTCGAGTGCGTGGGGTCGGTCTACGACGACCGAGACGACGTTGTTCGGGTGCTGAAGAAGGTCGTCCAAATCTTCAGGCCGGCGACGATGTCGGTATCGACCACGTGTGCGAGCCACGAGGTGTGGACGCGTGTCGCGGGGGCATTGGAGCCGCTTGGACTGAAGTGCCGGAGTTGCTCCGTGGACGAGTTTCCCGCCTCCGGTAATGTCGTGTACCAAACGTTCGTCGATCGTCGGAGTAAGAAAAATAGTAAGTAG

Protein Analysis

356

Amino Acids

39.57

Weight (kDa)

6.15

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 5 - 345 4.9e-107 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18930
fragaria_vesca FvH4_4g13980
malus_domestica MD13G1178800.v1.1 MD16G1180000.v1.1
prunus_persica Prupe.1G147600_v2.0.a1
pyrus_communis pycom16g15110
rosa_chinensis RchiOBHm_Chr4g0419671
rosa_laevigata RLG00000007803
rosa_multiflora Rmu_sc0003265.1_g000008
rosa_roxburghii Rroxscaffold_5G00362510
rosa_rugosa Rorug04G0159600
rosa_samantha Rh4BG223000 Rh4CG234300 Rh4DG220000
rosa_wichuraiana Rw4G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 623
AccI GTMKAC 2 cut(s) 219, 831
AccII CGCG 6 cut(s) 296, 342, 591, 806, 940, 947
AccIII TCCGGA 1 cut(s) 680
AclI AACGTT 1 cut(s) 1031
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 3 cut(s) 868, 884, 992
AcvI CACGTG 1 cut(s) 915
AcyI GRCGYC 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 931
AfaI GTAC 2 cut(s) 734, 1025
AfiI CCNNNNNNNGG 3 cut(s) 397, 791, 1010
AflIII ACRYGT 7 cut(s) 127, 192, 294, 489, 518, 914, 938
AgsI TTSAA 1 cut(s) 20
AhdI GACNNNNNGTC 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AloI GAACNNNNNNTCC 4 cut(s) 479, 511, 749, 781
AluBI AGCT 5 cut(s) 43, 262, 583, 801, 810
AluI AGCT 5 cut(s) 43, 262, 583, 801, 810
Alw21I GWGCWC 2 cut(s) 585, 700
Alw26I GTCTC 2 cut(s) 163, 837
Aor13HI TCCGGA 1 cut(s) 680
AoxI GGCC 3 cut(s) 162, 310, 887
ApeKI GCWGC 1 cut(s) 43
Asp700I GAANNNNTTC 2 cut(s) 420, 491
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 621
AsuHPI GGTGA 2 cut(s) 307, 650
AvaII GGWCC 1 cut(s) 252
BanI GGYRCC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 585
BauI CACGAG 2 cut(s) 693, 926
BbrPI CACGTG 1 cut(s) 915
BbsI GAAGAC 4 cut(s) 89, 316, 540, 795
Bbv12I GWGCWC 2 cut(s) 585, 700
BbvI GCAGC 1 cut(s) 30
BccI CCATC 1 cut(s) 779
BceAI ACGGC 4 cut(s) 125, 149, 562, 808
BcnI CCSGG 1 cut(s) 621
BcoDI GTCTC 2 cut(s) 163, 837
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 796
BglII AGATCT 1 cut(s) 304
BisI GCNGC 4 cut(s) 44, 331, 343, 962
BlsI GCNGC 4 cut(s) 45, 332, 344, 963
Bme1390I CCNGG 1 cut(s) 621
Bme18I GGWCC 1 cut(s) 252
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 4 cut(s) 253, 625, 758, 960
BmrFI CCNGG 1 cut(s) 621
BmsI GCATC 1 cut(s) 509
BoxI GACNNNNGTC 1 cut(s) 941
BpiI GAAGAC 4 cut(s) 89, 316, 540, 795
BpuMI CCSGG 1 cut(s) 621
BsaAI YACGTR 2 cut(s) 193, 915
BsaBI GATNNNNATC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 340, 990
BsaWI WCCGGW 2 cut(s) 680, 1010
BsaXI ACNNNNNCTCC 6 cut(s) 479, 509, 626, 656, 749, 779
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 791, 1010
Bse118I RCCGGY 2 cut(s) 647, 889
Bse1I ACTGG 1 cut(s) 676
Bse8I GATNNNNATC 1 cut(s) 236
BseAI TCCGGA 1 cut(s) 680
BseDI CCNNGG 2 cut(s) 340, 990
BseGI GGATG 2 cut(s) 500, 771
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 3 cut(s) 397, 791, 1010
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 1 cut(s) 254
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 30
BseYI CCCAGC 2 cut(s) 258, 366
BsgI GTGCAG 2 cut(s) 29, 648
Bsh1236I CGCG 6 cut(s) 296, 342, 591, 806, 940, 947
Bsh1285I CGRYCG 5 cut(s) 64, 165, 589, 841, 1042
BshFI GGCC 3 cut(s) 164, 312, 889
BshNI GGYRCC 1 cut(s) 623
BsiEI CGRYCG 5 cut(s) 64, 165, 589, 841, 1042
BsiHKAI GWGCWC 2 cut(s) 585, 700
BsiSI CCGG 6 cut(s) 621, 648, 681, 890, 979, 1011
BslFI GGGAC 3 cut(s) 71, 265, 603
BslI CCNNNNNNNGG 3 cut(s) 397, 791, 1010
BsmAI GTCTC 2 cut(s) 163, 837
BsmBI CGTCTC 1 cut(s) 837
BsmFI GGGAC 3 cut(s) 71, 265, 603
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 3 cut(s) 164, 312, 889
Bso31I GGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 585, 700
Bsp13I TCCGGA 1 cut(s) 680
Bsp143I GATC 4 cut(s) 231, 304, 702, 1039
BspANI GGCC 3 cut(s) 164, 312, 889
BspEI TCCGGA 1 cut(s) 680
BspFNI CGCG 6 cut(s) 296, 342, 591, 806, 940, 947
BspLI GGNNCC 4 cut(s) 253, 625, 758, 960
BspT107I GGYRCC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 163
BsrFI RCCGGY 2 cut(s) 647, 889
BsrI ACTGG 1 cut(s) 676
BssAI RCCGGY 2 cut(s) 647, 889
BssECI CCNNGG 2 cut(s) 340, 990
BssMI GATC 4 cut(s) 231, 304, 702, 1039
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 2 cut(s) 693, 926
Bst2BI CACGAG 2 cut(s) 693, 926
Bst4CI ACNGT 5 cut(s) 65, 154, 555, 638, 746
Bst6I CTCTTC 2 cut(s) 218, 426
BstACI GRCGYC 1 cut(s) 186
BstBAI YACGTR 2 cut(s) 193, 915
BstC8I GCNNGC 5 cut(s) 601, 649, 808, 891, 922
BstDSI CCRYGG 2 cut(s) 340, 990
BstF5I GGATG 2 cut(s) 500, 771
BstFNI CGCG 6 cut(s) 296, 342, 591, 806, 940, 947
BstKTI GATC 4 cut(s) 234, 307, 705, 1042
BstMAI GTCTC 2 cut(s) 163, 837
BstMBI GATC 4 cut(s) 231, 304, 702, 1039
BstMCI CGRYCG 5 cut(s) 64, 165, 589, 841, 1042
BstMWI GCNNNNNNNGC 5 cut(s) 40, 339, 807, 816, 984
BstNSI RCATGY 4 cut(s) 131, 140, 482, 522
BstPAI GACNNNNGTC 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 619
BstSFI CTRYAG 1 cut(s) 796
BstUI CGCG 6 cut(s) 296, 342, 591, 806, 940, 947
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 4 cut(s) 89, 316, 540, 795
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 3 cut(s) 164, 312, 889
BtgI CCRYGG 2 cut(s) 340, 990
BtsCI GGATG 2 cut(s) 500, 771
BtsIMutI CAGTG 2 cut(s) 150, 669
Cac8I GCNNGC 5 cut(s) 601, 649, 808, 891, 922
Cfr10I RCCGGY 2 cut(s) 647, 889
Cfr13I GGNCC 1 cut(s) 252
Cfr42I CCGCGG 1 cut(s) 343
CseI GACGC 3 cut(s) 194, 285, 946
Csp6I GTAC 2 cut(s) 733, 1024
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 8 cut(s) 128, 137, 457, 479, 483, 519, 574, 739
CviQI GTAC 2 cut(s) 733, 1024
DpnI GATC 4 cut(s) 233, 306, 704, 1041
DpnII GATC 4 cut(s) 231, 304, 702, 1039
DraIII CACNNNGTG 1 cut(s) 931
DriI GACNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 218, 426
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 2 cut(s) 218, 426
EciI GGCGGA 3 cut(s) 278, 564, 634
Ecl136II GAGCTC 1 cut(s) 583
EclXI CGGCCG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 252
Eco52I CGGCCG 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 583
Eco57I CTGAAG 3 cut(s) 868, 884, 992
Eco72I CACGTG 1 cut(s) 915
EcoICRI GAGCTC 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 585
Esp3I CGTCTC 1 cut(s) 837
FaeI CATG 8 cut(s) 131, 140, 460, 482, 486, 522, 577, 742
FaiI YATR 8 cut(s) 129, 138, 458, 480, 484, 520, 575, 740
FaqI GGGAC 3 cut(s) 71, 265, 603
FatI CATG 8 cut(s) 127, 136, 456, 478, 482, 518, 573, 738
FauI CCCGC 5 cut(s) 347, 608, 722, 940, 1012
FblI GTMKAC 2 cut(s) 219, 831
Fnu4HI GCNGC 4 cut(s) 44, 331, 343, 962
FokI GGATG 2 cut(s) 487, 758
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 4 cut(s) 44, 331, 343, 962
FspBI CTAG 1 cut(s) 302
GluI GCNGC 4 cut(s) 44, 331, 343, 962
GsaI CCCAGC 2 cut(s) 262, 370
HaeIII GGCC 3 cut(s) 164, 312, 889
HapII CCGG 6 cut(s) 621, 648, 681, 890, 979, 1011
HgaI GACGC 3 cut(s) 194, 285, 946
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 8 cut(s) 131, 140, 460, 482, 486, 522, 577, 742
HinfI GANTC 4 cut(s) 116, 203, 416, 641
HpaII CCGG 6 cut(s) 621, 648, 681, 890, 979, 1011
HphI GGTGA 2 cut(s) 307, 650
Hpy166II GTNNAC 6 cut(s) 220, 558, 832, 936, 994, 1024
Hpy188I TCNGA 3 cut(s) 202, 702, 1047
Hpy188III TCNNGA 4 cut(s) 28, 241, 504, 681
Hpy8I GTNNAC 6 cut(s) 220, 558, 832, 936, 994, 1024
HpyAV CCTTC 2 cut(s) 14, 862
HpyCH4III ACNGT 5 cut(s) 65, 154, 555, 638, 746
HpyCH4IV ACGT 7 cut(s) 192, 453, 489, 777, 849, 914, 1031
HpyCH4V TGCA 6 cut(s) 46, 124, 150, 482, 573, 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 339, 807, 816, 984
HpySE526I ACGT 7 cut(s) 192, 453, 489, 777, 849, 914, 1031
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 8 cut(s) 131, 140, 460, 482, 486, 522, 577, 742
Kpn2I TCCGGA 1 cut(s) 680
KroI GCCGGC 2 cut(s) 647, 889
KroNI GCCGGC 2 cut(s) 649, 891
KspI CCGCGG 1 cut(s) 343
Kzo9I GATC 4 cut(s) 231, 304, 702, 1039
LmnI GCTCC 4 cut(s) 40, 267, 958, 992
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 509
MaeI CTAG 1 cut(s) 302
MaeII ACGT 7 cut(s) 192, 453, 489, 777, 849, 914, 1031
MaeIII GTNAC 2 cut(s) 638, 778
MalI GATC 4 cut(s) 233, 306, 704, 1041
MboI GATC 4 cut(s) 231, 304, 702, 1039
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 585, 700
MluCI AATT 1 cut(s) 684
MluI ACGCGT 2 cut(s) 294, 938
MlyI GAGTC 3 cut(s) 125, 212, 635
MmeI TCCRAC 1 cut(s) 1025
Mph1103I ATGCAT 1 cut(s) 484
MroI TCCGGA 1 cut(s) 680
MroNI GCCGGC 2 cut(s) 647, 889
MroXI GAANNNNTTC 2 cut(s) 420, 491
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 481
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 6 cut(s) 621, 648, 681, 890, 979, 1011
MspR9I CCNGG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 716
MvnI CGCG 6 cut(s) 296, 342, 591, 806, 940, 947
MwoI GCNNNNNNNGC 5 cut(s) 40, 339, 807, 816, 984
NaeI GCCGGC 2 cut(s) 649, 891
NciI CCSGG 1 cut(s) 621
NdeII GATC 4 cut(s) 231, 304, 702, 1039
NgoMIV GCCGGC 2 cut(s) 647, 889
NlaIII CATG 8 cut(s) 131, 140, 460, 482, 486, 522, 577, 742
NlaIV GGNNCC 4 cut(s) 253, 625, 758, 960
NmeAIII GCCGAG 2 cut(s) 140, 288
NmuCI GTSAC 1 cut(s) 638
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 4 cut(s) 131, 140, 482, 522
PciI ACATGT 2 cut(s) 127, 518
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 198, 783, 810, 843
PctI GAATGC 1 cut(s) 716
PdiI GCCGGC 2 cut(s) 649, 891
PdmI GAANNNNTTC 2 cut(s) 420, 491
PfeI GAWTC 1 cut(s) 416
PflFI GACNNNGTC 2 cut(s) 398, 898
PkrI GCNGC 4 cut(s) 45, 332, 344, 963
Ple19I CGATCG 1 cut(s) 1042
PleI GAGTC 3 cut(s) 124, 211, 635
PmaCI CACGTG 1 cut(s) 915
PmlI CACGTG 1 cut(s) 915
PpsI GAGTC 3 cut(s) 124, 211, 635
Ppu21I YACGTR 2 cut(s) 193, 915
PscI ACATGT 2 cut(s) 127, 518
PshAI GACNNNNGTC 1 cut(s) 941
Psp124BI GAGCTC 1 cut(s) 585
Psp1406I AACGTT 1 cut(s) 1031
PspCI CACGTG 1 cut(s) 915
PspFI CCCAGC 2 cut(s) 258, 366
PspN4I GGNNCC 4 cut(s) 253, 625, 758, 960
PspPI GGNCC 1 cut(s) 252
PsrI GAACNNNNNNTAC 4 cut(s) 734, 766, 1016, 1048
PsuI RGATCY 1 cut(s) 304
PsyI GACNNNGTC 2 cut(s) 398, 898
PvuI CGATCG 1 cut(s) 1042
RsaI GTAC 2 cut(s) 734, 1025
RsaNI GTAC 2 cut(s) 733, 1024
RseI CAYNNNNRTG 1 cut(s) 481
SacI GAGCTC 1 cut(s) 585
SacII CCGCGG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 4 cut(s) 44, 331, 343, 962
Sau3AI GATC 4 cut(s) 231, 304, 702, 1039
Sau96I GGNCC 1 cut(s) 252
SchI GAGTC 3 cut(s) 125, 212, 635
ScrFI CCNGG 1 cut(s) 621
SduI GDGCHC 2 cut(s) 585, 700
SfaNI GCATC 1 cut(s) 509
SfcI CTRYAG 1 cut(s) 796
Sfr303I CCGCGG 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 343
SinI GGWCC 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 481
Sse9I AATT 1 cut(s) 684
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 1 cut(s) 619
TaaI ACNGT 5 cut(s) 65, 154, 555, 638, 746
TaiI ACGT 7 cut(s) 195, 456, 492, 780, 852, 917, 1034
TaqI TCGA 9 cut(s) 27, 114, 183, 564, 585, 720, 813, 908, 1038
TaqII GACCGA 4 cut(s) 77, 593, 817, 855
TasI AATT 1 cut(s) 684
TauI GCSGC 3 cut(s) 333, 345, 964
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 2 cut(s) 157, 676
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 1 cut(s) 755
TspGWI ACGGA 2 cut(s) 605, 979
TspRI CASTG 2 cut(s) 157, 676
Tth111I GACNNNGTC 2 cut(s) 398, 898
VpaK11BI GGWCC 1 cut(s) 252
XceI RCATGY 4 cut(s) 131, 140, 482, 522
XmiI GTMKAC 2 cut(s) 219, 831
XmnI GAANNNNTTC 2 cut(s) 420, 491
XspI CTAG 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.