Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0016174

Physical Location & Seq

Genomic Coordinates Reverse (-)

11103934 .. 11105001

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGGTTTCTGGTTTTGAAGGGTTCGAGAAGCGATTGGAGCTACACTTCTCAGGGGACGACCCTAAAAATGTAGGGTCGCTCGGTCTTGGTCTTCGCCTCCTTGACTTTGAGTCCTTGCAACAAGTCCTACATGCCGTCCAATGCACCGTTGTCTCGGCCGTAGCGAATCAGCACTTCGATGCTTACGTGTTATCCGAGTCCAGCCTCTTCGTCTACCCCACCAAGATCATCATCAAGACATGTGGGACCACCCAGCTCCTCAAATCCATCCCTCCACTCCTCCGCCTCGCTTCGCTAGATCGCGGCCTCACTCTCATCTCCTGCCGCTACACCCGCGGTAACTTTATCTTCCCCAGTGCCCAGCCTTTTCCCTACACCAACTTCCAAAACGAGGTCGTTTACTTAGAGGAGTCACTTCCCGCCACTCTCTGCTACCGAAAGGCCAACGTCATGCCCTCCAAAACCCCCTCGCACGCGTGGCACGTGTTCACAGCATCCACGCAAAACACTACATGTCGTGTAGGGGAAGACGACAACGACGGCGGATTGTTCACCCTCGAAATCTGCATGACCGAGCTCGACCGCGACCTCGCGCGCAACTTCTTTCTCCGTCCCAGCGCCAAATACGACGGCGACTCTGCTGGCAAAGAGATGACGGCGATCACTGGAATTTCCGAAATTAACCCTCGGGCTCTGATCTGCGACTTCGCCTTCGACCCCTGCGGCTACTCCATGAACGGCATCGACGGCGACCGCCACTCCACCATCCATGTCACCCCCGAGGACGGGTACAGCTACGCGAGCTTCGAGTGCGTGGGGTCGGTCTACGACGACCGCGACGACGTTGTTCGGGTGCTGAAGAAAGTCGTCCAAATCTTCCGACCGGCGACGATGTCCGTGTCGACCACGTGCGCGAGCCACGAGGTGTGGACGCGTGTCGCGGGGGCAGTGGAGCCGCTGGGGCTGAAGTGCCGGAGTTGCGCCGTGGACGAGTTTCCCGCCGCCGGCAACGTCGTGTACCAAACGTTCATGGATCGTCGGAATACTGAAAATAATAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0032501 GO:0032502 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048731 GO:0048856 GO:0071704 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

SAM_decarbox

Protein Analysis

356

Amino Acids

39.32

Weight (kDa)

5.42

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_decarbox	PF01536	5 - 344	1.4e-108	Adenosylmethionine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18930
fragaria_vesca	FvH4_4g13980
malus_domestica	MD13G1178800.v1.1 MD16G1180000.v1.1
prunus_persica	Prupe.1G147600_v2.0.a1
pyrus_communis	pycom16g15110
rosa_chinensis	RchiOBHm_Chr4g0419671
rosa_laevigata	RLG00000007803
rosa_multiflora	Rmu_sc0003265.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362510
rosa_rugosa	Rorug04G0159600
rosa_samantha	Rh4BG223000 Rh4CG234300 Rh4DG220000
rosa_wichuraiana	Rw4G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	216, 828, 905
AclI	AACGTT	1 cut(s)	1028
AclWI	GGATC	1 cut(s)	1044
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	2 cut(s)	881, 989
AcvI	CACGTG	2 cut(s)	487, 912
AdeI	CACNNNGTG	1 cut(s)	928
AfaI	GTAC	2 cut(s)	794, 1022
AfiI	CCNNNNNNNGG	4 cut(s)	394, 788, 789, 1007
AflIII	ACRYGT	6 cut(s)	189, 242, 477, 486, 515, 935
AgsI	TTSAA	1 cut(s)	20
AhdI	GACNNNNNGTC	1 cut(s)	112
AluBI	AGCT	5 cut(s)	43, 259, 580, 798, 807
AluI	AGCT	5 cut(s)	43, 259, 580, 798, 807
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	1044
Ama87I	CYCGRG	2 cut(s)	690, 782
AoxI	GGCC	3 cut(s)	159, 307, 444
ApoI	RAATTY	1 cut(s)	672
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AspLEI	GCGC	5 cut(s)	598, 600, 623, 917, 986
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	547, 769
AvaI	CYCGRG	2 cut(s)	690, 782
AvaII	GGWCC	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	2 cut(s)	582, 697
BauI	CACGAG	1 cut(s)	923
BbrPI	CACGTG	2 cut(s)	487, 912
BbsI	GAAGAC	2 cut(s)	86, 537
Bbv12I	GWGCWC	1 cut(s)	582
BccI	CCATC	2 cut(s)	278, 776
BceAI	ACGGC	8 cut(s)	122, 146, 559, 649, 675, 757, 766, 971
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	624
BglI	GCCNNNNNGGC	1 cut(s)	964
BisI	GCNGC	5 cut(s)	307, 328, 727, 959, 1005
BlsI	GCNGC	5 cut(s)	308, 329, 728, 960, 1006
Bme18I	GGWCC	1 cut(s)	249
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	2 cut(s)	690, 782
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	250, 957
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	3 cut(s)	172, 506, 753
BmuI	ACTGGG	1 cut(s)	351
BoxI	GACNNNNGTC	1 cut(s)	938
BpiI	GAAGAC	2 cut(s)	86, 537
BsaAI	YACGTR	3 cut(s)	190, 487, 912
BsaBI	GATNNNNATC	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	337, 689, 783, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bsc4I	CCNNNNNNNGG	4 cut(s)	394, 788, 789, 1007
Bse118I	RCCGGY	2 cut(s)	886, 1007
Bse1I	ACTGG	2 cut(s)	357, 673
Bse8I	GATNNNNATC	1 cut(s)	233
BseDI	CCNNGG	4 cut(s)	337, 689, 783, 987
BseGI	GGATG	3 cut(s)	270, 497, 768
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	4 cut(s)	394, 788, 789, 1007
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	357, 673
BsePI	GCGCGC	1 cut(s)	596
BseRI	GAGGAG	3 cut(s)	251, 272, 425
BseSI	GKGCMC	1 cut(s)	364
BseX3I	CGGCCG	1 cut(s)	159
BseYI	CCCAGC	4 cut(s)	255, 363, 617, 961
Bsh1285I	CGRYCG	5 cut(s)	162, 586, 757, 838, 887
BshFI	GGCC	3 cut(s)	161, 309, 446
BsiEI	CGRYCG	5 cut(s)	162, 586, 757, 838, 887
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	2 cut(s)	690, 782
BsiSI	CCGG	3 cut(s)	887, 976, 1008
BslFI	GGGAC	3 cut(s)	71, 262, 600
BslI	CCNNNNNNNGG	4 cut(s)	394, 788, 789, 1007
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	3 cut(s)	71, 262, 600
BsnI	GGCC	3 cut(s)	161, 309, 446
BsoBI	CYCGRG	2 cut(s)	690, 782
Bsp1286I	GDGCHC	3 cut(s)	364, 582, 697
Bsp143I	GATC	5 cut(s)	228, 301, 663, 699, 1036
BspANI	GGCC	3 cut(s)	161, 309, 446
BspCNI	CTCAG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	250, 957
BspPI	GGATC	1 cut(s)	1044
BsrFI	RCCGGY	2 cut(s)	886, 1007
BsrI	ACTGG	2 cut(s)	357, 673
BssAI	RCCGGY	2 cut(s)	886, 1007
BssECI	CCNNGG	4 cut(s)	337, 689, 783, 987
BssHII	GCGCGC	1 cut(s)	596
BssMI	GATC	5 cut(s)	228, 301, 663, 699, 1036
BssSI	CACGAG	1 cut(s)	923
Bst2BI	CACGAG	1 cut(s)	923
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	215
BstBAI	YACGTR	3 cut(s)	190, 487, 912
BstC8I	GCNNGC	6 cut(s)	477, 598, 646, 805, 919, 1009
BstDEI	CTNAG	2 cut(s)	52, 406
BstDSI	CCRYGG	2 cut(s)	337, 987
BstF5I	GGATG	3 cut(s)	270, 497, 768
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	5 cut(s)	598, 600, 623, 917, 986
BstKTI	GATC	5 cut(s)	231, 304, 666, 702, 1039
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	5 cut(s)	228, 301, 663, 699, 1036
BstMCI	CGRYCG	5 cut(s)	162, 586, 757, 838, 887
BstMWI	GCNNNNNNNGC	8 cut(s)	40, 336, 481, 750, 804, 813, 964, 981
BstNSI	RCATGY	3 cut(s)	137, 246, 519
BstPAI	GACNNNNGTC	1 cut(s)	938
BstSLI	GKGCMC	1 cut(s)	364
BstV2I	GAAGAC	2 cut(s)	86, 537
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	161, 309, 446
BtgI	CCRYGG	2 cut(s)	337, 987
BtsCI	GGATG	3 cut(s)	270, 497, 768
BtsI	GCAGTG	1 cut(s)	957
BtsIMutI	CAGTG	3 cut(s)	364, 666, 957
Cac8I	GCNNGC	6 cut(s)	477, 598, 646, 805, 919, 1009
CfoI	GCGC	5 cut(s)	598, 600, 623, 917, 986
Cfr10I	RCCGGY	2 cut(s)	886, 1007
Cfr13I	GGNCC	1 cut(s)	249
Cfr42I	CCGCGG	1 cut(s)	340
CseI	GACGC	1 cut(s)	943
Csp6I	GTAC	2 cut(s)	793, 1021
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviAII	CATG	8 cut(s)	134, 243, 454, 516, 571, 736, 773, 1033
CviQI	GTAC	2 cut(s)	793, 1021
DdeI	CTNAG	2 cut(s)	52, 406
DpnI	GATC	5 cut(s)	230, 303, 665, 701, 1038
DpnII	GATC	5 cut(s)	228, 301, 663, 699, 1036
DraIII	CACNNNGTG	1 cut(s)	928
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	215
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	2 cut(s)	275, 561
Ecl136II	GAGCTC	1 cut(s)	580
EclXI	CGGCCG	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	582, 697
Eco47I	GGWCC	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	2 cut(s)	881, 989
Eco72I	CACGTG	2 cut(s)	487, 912
Eco88I	CYCGRG	2 cut(s)	690, 782
EcoICRI	GAGCTC	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	582, 697
FaeI	CATG	8 cut(s)	137, 246, 457, 519, 574, 739, 776, 1036
FaiI	YATR	8 cut(s)	135, 244, 455, 517, 572, 737, 774, 1034
FaqI	GGGAC	3 cut(s)	71, 262, 600
FatI	CATG	8 cut(s)	133, 242, 453, 515, 570, 735, 772, 1032
FauI	CCCGC	4 cut(s)	344, 430, 937, 1009
FblI	GTMKAC	3 cut(s)	216, 828, 905
Fnu4HI	GCNGC	5 cut(s)	307, 328, 727, 959, 1005
FokI	GGATG	3 cut(s)	257, 484, 755
FriOI	GRGCYC	2 cut(s)	582, 697
Fsp4HI	GCNGC	5 cut(s)	307, 328, 727, 959, 1005
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	5 cut(s)	597, 599, 622, 916, 985
GluI	GCNGC	5 cut(s)	307, 328, 727, 959, 1005
GsaI	CCCAGC	4 cut(s)	259, 367, 621, 965
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	161, 309, 446
HapII	CCGG	3 cut(s)	887, 976, 1008
HgaI	GACGC	1 cut(s)	943
HhaI	GCGC	5 cut(s)	598, 600, 623, 917, 986
Hin1II	CATG	8 cut(s)	137, 246, 457, 519, 574, 739, 776, 1036
Hin6I	GCGC	5 cut(s)	596, 598, 621, 915, 984
HinP1I	GCGC	5 cut(s)	596, 598, 621, 915, 984
HincII	GTYRAC	1 cut(s)	906
HindII	GTYRAC	1 cut(s)	906
HinfI	GANTC	5 cut(s)	113, 169, 200, 413, 638
HpaII	CCGG	3 cut(s)	887, 976, 1008
HphI	GGTGA	2 cut(s)	547, 769
Hpy166II	GTNNAC	9 cut(s)	217, 403, 492, 555, 829, 906, 933, 991, 1021
Hpy188I	TCNGA	5 cut(s)	199, 679, 699, 884, 1044
Hpy188III	TCNNGA	2 cut(s)	28, 238
Hpy8I	GTNNAC	9 cut(s)	217, 403, 492, 555, 829, 906, 933, 991, 1021
Hpy99I	CGWCG	9 cut(s)	545, 635, 752, 836, 845, 848, 895, 1019, 1044
HpyAV	CCTTC	2 cut(s)	14, 724
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	7 cut(s)	189, 450, 486, 846, 911, 1014, 1028
HpyCH4V	TGCA	3 cut(s)	121, 147, 570
HpyF10VI	GCNNNNNNNGC	8 cut(s)	40, 336, 481, 750, 804, 813, 964, 981
HpyF3I	CTNAG	2 cut(s)	52, 406
HpySE526I	ACGT	7 cut(s)	189, 450, 486, 846, 911, 1014, 1028
Hsp92II	CATG	8 cut(s)	137, 246, 457, 519, 574, 739, 776, 1036
HspAI	GCGC	5 cut(s)	596, 598, 621, 915, 984
KroI	GCCGGC	1 cut(s)	1007
KroNI	GCCGGC	1 cut(s)	1009
KspI	CCGCGG	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	228, 301, 663, 699, 1036
LmnI	GCTCC	3 cut(s)	40, 264, 955
LweI	GCATC	3 cut(s)	172, 506, 753
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	7 cut(s)	189, 450, 486, 846, 911, 1014, 1028
MaeIII	GTNAC	3 cut(s)	341, 414, 775
MalI	GATC	5 cut(s)	230, 303, 665, 701, 1038
MboI	GATC	5 cut(s)	228, 301, 663, 699, 1036
MboII	GAAGA	6 cut(s)	86, 202, 343, 542, 871, 874
MhlI	GDGCHC	3 cut(s)	364, 582, 697
MluCI	AATT	2 cut(s)	672, 681
MluI	ACGCGT	2 cut(s)	477, 935
MlyI	GAGTC	4 cut(s)	122, 209, 422, 632
MmeI	TCCRAC	2 cut(s)	907, 1022
MroNI	GCCGGC	1 cut(s)	1007
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	339, 961
MspI	CCGG	3 cut(s)	887, 976, 1008
MwoI	GCNNNNNNNGC	8 cut(s)	40, 336, 481, 750, 804, 813, 964, 981
NaeI	GCCGGC	1 cut(s)	1009
NdeII	GATC	5 cut(s)	228, 301, 663, 699, 1036
NgoMIV	GCCGGC	1 cut(s)	1007
NlaIII	CATG	8 cut(s)	137, 246, 457, 519, 574, 739, 776, 1036
NlaIV	GGNNCC	2 cut(s)	250, 957
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	414, 775
NspI	RCATGY	3 cut(s)	137, 246, 519
PauI	GCGCGC	1 cut(s)	596
PciI	ACATGT	2 cut(s)	242, 515
PcsI	WCGNNNNNNNCGW	7 cut(s)	164, 186, 195, 483, 807, 837, 840
PdiI	GCCGGC	1 cut(s)	1009
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	895
PkrI	GCNGC	5 cut(s)	308, 329, 728, 960, 1006
PleI	GAGTC	4 cut(s)	121, 208, 421, 632
PmaCI	CACGTG	2 cut(s)	487, 912
PmlI	CACGTG	2 cut(s)	487, 912
PpsI	GAGTC	4 cut(s)	121, 208, 421, 632
Ppu21I	YACGTR	3 cut(s)	190, 487, 912
PscI	ACATGT	2 cut(s)	242, 515
PshAI	GACNNNNGTC	1 cut(s)	938
Psp124BI	GAGCTC	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	1028
PspCI	CACGTG	2 cut(s)	487, 912
PspFI	CCCAGC	4 cut(s)	255, 363, 617, 961
PspN4I	GGNNCC	2 cut(s)	250, 957
PspPI	GGNCC	1 cut(s)	249
PsrI	GAACNNNNNNTAC	2 cut(s)	1013, 1045
PsyI	GACNNNGTC	1 cut(s)	895
PteI	GCGCGC	1 cut(s)	596
RsaI	GTAC	2 cut(s)	794, 1022
RsaNI	GTAC	2 cut(s)	793, 1021
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	582
SacII	CCGCGG	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	904
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	5 cut(s)	307, 328, 727, 959, 1005
Sau3AI	GATC	5 cut(s)	228, 301, 663, 699, 1036
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	4 cut(s)	122, 209, 422, 632
SduI	GDGCHC	3 cut(s)	364, 582, 697
SfaNI	GCATC	3 cut(s)	172, 506, 753
Sfr303I	CCGCGG	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	672, 681
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	7 cut(s)	192, 453, 489, 849, 914, 1017, 1031
TaqI	TCGA	8 cut(s)	27, 180, 561, 582, 717, 747, 810, 905
TaqII	GACCGA	3 cut(s)	74, 590, 814
TasI	AATT	2 cut(s)	672, 681
TauI	GCSGC	5 cut(s)	309, 330, 729, 961, 1007
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	3 cut(s)	364, 673, 957
TseFI	GTSAC	2 cut(s)	414, 775
Tsp45I	GTSAC	2 cut(s)	414, 775
TspDTI	ATGAA	2 cut(s)	752, 1021
TspGWI	ACGGA	2 cut(s)	602, 889
TspRI	CASTG	3 cut(s)	364, 673, 957
Tth111I	GACNNNGTC	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	672
XceI	RCATGY	3 cut(s)	137, 246, 519
XmiI	GTMKAC	3 cut(s)	216, 828, 905
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.