AT5G21482

cytokinin dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
7226606 .. 7230304
3699 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G21482.1

Sequence Viewer

Length: 1575 bp
ATGATAGCTTACATAGAACCATACTTCTTGGAAAACGACGCCGAGGCTGCCTCTGCCGCCACCGCCGCCGGAAAATCTACGGATGGTGTTTCTGAGTCACTTAACATCCAAGGAGAAATCTTATGTGGTGGAGCTGCGGCGGATATCGCCGGGAGAGATTTTGGCGGCATGAACTGTGTGAAGCCTCTTGCTGTGGTGAGACCAGTGGGACCGGAAGATATCGCCGGAGCGGTGAAAGCGGCTCTGAGGTCAGATAAACTAACGGTGGCGGCGCGTGGAAACGGCCATTCTATCAACGGTCAAGCCATGGCGGAAGGAGGACTCGTTGTCGATATGAGTACCACGGCGGAGAATCATTTCGAGGTTGGTTATTTATCCGGCGGTGATGCCACGGCGTTTGTTGATGTCTCCGGAGGGGCATTATGGGAAGATGTATTGAAACGGTGCGTTTCGGAGTACGGTTTGGCTCCGAGGTCTTGGACTGATTATCTTGGGTTAACGGTGGGAGGTACGTTGTCAAATGCCGGCGTTAGTGGTCAAGCGTTCCGTTACGGACCACAGACGTCAAATGTAACGGAGTTGGACGTCGTTACGGGAAATGGTGACGTCGTTACTTGCTCGGAGATTGAGAATTCAGAGCTATTCTTCTCTGTTTTAGGTGGTCTTGGTCAGTTTGGTATCATCACCAGAGCTAGGGTTTTGCTACAGCCAGCTCCTGATATGGTGAGATGGATAAGAGTAGTATACACCGAGTTCGATGAGTTCACTCAAGACGCCGAGTGGCTAGTAAGTCAGAAGAACGAGTCATCGTTCGATTACGTGGAAGGATTCGTGTTTGTCAACGGTGCTGACCCGGTTAACGGATGGCCAACAGTTCCCCTCCACCCGGACCACGAGTTTGACCCGACCCGACTACCACAATCTTGCGGGTCGGTTCTTTATTGCCTCGAACTCGGTCTTCACTACAGAGACTCCGATTCCAACTCAACCATTGACAAGAGGGTGGAGAGATTGATCGGACGGCTAAGATTTAATGAAGGATTAAGATTCGAGGTAGATCTGCCGTACGTTGACTTTTTACTACGAGTCAAACGGTCAGAAGAAATCGCGAAGGAGAACGGTACGTGGGAAACGCCTCACCCTTGGCTCAACCTCTTCGTGTCGAAGCGAGACATCGGAGATTTCAATCGGACGGTGTTCAAAGAACTTGTCAAGAACGGAGTCAATGGTCCAATGCTTGTGTACCCACTCTTGCGAAGCAGGTGGGATGATCGGACGTCCGTGGTTATACCGGAAGAAGGAGAGATATTCTACATTGTGGCATTGCTTCGGTTCGTGCCGCCGTGTGCGAAAGTCTCTTCGGTAGAGAAAATGGTAGCTCAAAACCAAGAGATCGTTCATTGGTGTGTCAAAAACGGAATTGATTACAAATTGTATCTTCCTCATTACAAGTCTCAAGAGGAATGGATTCGCCATTTTGGAAACCGATGGTCGAGATTTGTTGATAGGAAAGCTATGTTTGATCCCATGGCTATACTTTCACCGGGTCAAAAGATTTTCAATAGGTCTCTTTGA

Protein Analysis

524

Amino Acids

57.97

Weight (kDa)

5.02

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 62 - 207 1.7e-20 FAD binding domain
Cytokin-bind PF09265 239 - 520 4.5e-115 Cytokinin dehydrogenase 1, FAD and cytokinin binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1251
AatII GACGTC 4 cut(s) 566, 588, 609, 1280
Acc36I ACCTGC 1 cut(s) 1251
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 744
AccII CGCG 2 cut(s) 274, 1109
AccIII TCCGGA 1 cut(s) 410
AclWI GGATC 1 cut(s) 1517
AcoI YGGCCR 2 cut(s) 283, 866
AcsI RAATTY 1 cut(s) 631
AcyI GRCGYC 6 cut(s) 39, 563, 585, 606, 774, 1277
AfaI GTAC 6 cut(s) 340, 458, 511, 1067, 1123, 1244
AfiI CCNNNNNNNGG 4 cut(s) 693, 860, 886, 1298
AgsI TTSAA 4 cut(s) 439, 1186, 1201, 1561
AhdI GACNNNNNGTC 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 1380, 1412
AluBI AGCT 7 cut(s) 8, 134, 640, 692, 713, 1379, 1514
AluI AGCT 7 cut(s) 8, 134, 640, 692, 713, 1379, 1514
Alw26I GTCTC 6 cut(s) 193, 412, 963, 1164, 1360, 1458
AlwI GGATC 1 cut(s) 1517
AlwNI CAGNNNCTG 1 cut(s) 716
Aor13HI TCCGGA 1 cut(s) 410
AoxI GGCC 2 cut(s) 283, 866
ApeKI GCWGC 2 cut(s) 47, 134
ApoI RAATTY 1 cut(s) 631
ArsI GACNNNNNNTTYG 4 cut(s) 881, 913, 1194, 1226
Asp700I GAANNNNTTC 2 cut(s) 356, 1467
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 4 cut(s) 209, 554, 889, 1229
AsuC2I CCSGG 4 cut(s) 151, 854, 887, 1545
AsuHPI GGTGA 8 cut(s) 208, 244, 395, 614, 676, 736, 1130, 1533
AvaII GGWCC 4 cut(s) 209, 554, 889, 1229
BalI TGGCCA 1 cut(s) 868
BauI CACGAG 1 cut(s) 893
BbsI GAAGAC 1 cut(s) 950
BbvI GCAGC 2 cut(s) 34, 121
BccI CCATC 4 cut(s) 77, 723, 858, 1482
BceAI ACGGC 6 cut(s) 298, 360, 408, 1037, 1048, 1327
BcnI CCSGG 4 cut(s) 151, 854, 887, 1545
BcoDI GTCTC 6 cut(s) 193, 412, 963, 1164, 1360, 1458
BfaI CTAG 2 cut(s) 693, 785
BfmI CTRYAG 2 cut(s) 704, 964
BfuAI ACCTGC 1 cut(s) 1251
BglII AGATCT 1 cut(s) 1057
BisI GCNGC 9 cut(s) 48, 57, 66, 135, 138, 166, 240, 270, 1340
BlsI GCNGC 9 cut(s) 49, 58, 67, 136, 139, 167, 241, 271, 1341
Bme1390I CCNGG 4 cut(s) 151, 854, 887, 1545
Bme18I GGWCC 4 cut(s) 209, 554, 889, 1229
BmeRI GACNNNNNGTC 1 cut(s) 326
BmgT120I GGNCC 4 cut(s) 209, 554, 889, 1229
BmiI GGNNCC 2 cut(s) 210, 468
BmrFI CCNGG 4 cut(s) 151, 854, 887, 1545
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 950
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpuEI CTTGAG 2 cut(s) 753, 1440
BpuMI CCSGG 4 cut(s) 151, 854, 887, 1545
BsaAI YACGTR 2 cut(s) 820, 1125
BsaBI GATNNNNATC 1 cut(s) 1185
BsaHI GRCGYC 6 cut(s) 39, 563, 585, 606, 774, 1277
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 9 cut(s) 42, 109, 306, 342, 390, 470, 1142, 1281, 1527
BsaWI WCCGGW 3 cut(s) 211, 410, 1291
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 956, 986
Bsc4I CCNNNNNNNGG 4 cut(s) 693, 860, 886, 1298
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 1322
Bse8I GATNNNNATC 1 cut(s) 1185
BseAI TCCGGA 1 cut(s) 410
BseDI CCNNGG 9 cut(s) 42, 109, 306, 342, 390, 470, 1142, 1281, 1527
BseGI GGATG 4 cut(s) 88, 105, 869, 1273
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 4 cut(s) 693, 860, 886, 1298
BseMI GCAATG 1 cut(s) 1322
BseMII CTCAG 2 cut(s) 84, 236
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 34, 121
Bsh1236I CGCG 2 cut(s) 274, 1109
BshFI GGCC 2 cut(s) 285, 868
BsiWI CGTACG 1 cut(s) 1065
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 4 cut(s) 693, 860, 886, 1298
BsmAI GTCTC 6 cut(s) 193, 412, 963, 1164, 1360, 1458
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 2 cut(s) 285, 868
Bso31I GGTCTC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 410
Bsp143I GATC 5 cut(s) 1014, 1057, 1270, 1392, 1522
Bsp19I CCATGG 2 cut(s) 306, 1527
Bsp68I TCGCGA 1 cut(s) 1109
BspANI GGCC 2 cut(s) 285, 868
BspCNI CTCAG 2 cut(s) 85, 237
BspEI TCCGGA 1 cut(s) 410
BspFNI CGCG 2 cut(s) 274, 1109
BspLI GGNNCC 2 cut(s) 210, 468
BspMI ACCTGC 1 cut(s) 1251
BspPI GGATC 1 cut(s) 1517
BspTNI GGTCTC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 1322
BsrFI RCCGGY 1 cut(s) 524
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 9 cut(s) 42, 109, 306, 342, 390, 470, 1142, 1281, 1527
BssMI GATC 5 cut(s) 1014, 1057, 1270, 1392, 1522
BssNAI GTATAC 1 cut(s) 745
BssNI GRCGYC 6 cut(s) 39, 563, 585, 606, 774, 1277
BssSI CACGAG 1 cut(s) 893
BssT1I CCWWGG 4 cut(s) 109, 306, 1142, 1527
Bst1107I GTATAC 1 cut(s) 745
Bst2BI CACGAG 1 cut(s) 893
Bst6I CTCTTC 2 cut(s) 1160, 1363
BstACI GRCGYC 6 cut(s) 39, 563, 585, 606, 774, 1277
BstBAI YACGTR 2 cut(s) 820, 1125
BstC8I GCNNGC 2 cut(s) 526, 711
BstDEI CTNAG 3 cut(s) 93, 245, 1025
BstDSI CCRYGG 5 cut(s) 306, 342, 390, 1281, 1527
BstF5I GGATG 4 cut(s) 88, 105, 869, 1273
BstFNI CGCG 2 cut(s) 274, 1109
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 5 cut(s) 1017, 1060, 1273, 1395, 1525
BstMAI GTCTC 6 cut(s) 193, 412, 963, 1164, 1360, 1458
BstMBI GATC 5 cut(s) 1014, 1057, 1270, 1392, 1522
BstMWI GCNNNNNNNGC 7 cut(s) 47, 53, 56, 62, 65, 146, 236
BstSCI CCNGG 4 cut(s) 149, 852, 885, 1543
BstSFI CTRYAG 2 cut(s) 704, 964
BstUI CGCG 2 cut(s) 274, 1109
BstV1I GCAGC 2 cut(s) 34, 121
BstV2I GAAGAC 1 cut(s) 950
BstX2I RGATCY 1 cut(s) 1057
BstYI RGATCY 1 cut(s) 1057
BstZ17I GTATAC 1 cut(s) 745
BsuRI GGCC 2 cut(s) 285, 868
BtgI CCRYGG 5 cut(s) 306, 342, 390, 1281, 1527
BtsCI GGATG 4 cut(s) 88, 105, 869, 1273
BtsIMutI CAGTG 1 cut(s) 210
BtuMI TCGCGA 1 cut(s) 1109
BveI ACCTGC 1 cut(s) 1251
Cac8I GCNNGC 2 cut(s) 526, 711
CaiI CAGNNNCTG 1 cut(s) 716
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 4 cut(s) 209, 554, 889, 1229
CseI GACGC 2 cut(s) 47, 782
Csp6I GTAC 6 cut(s) 339, 457, 510, 1066, 1122, 1243
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 3 cut(s) 169, 307, 1528
CviQI GTAC 6 cut(s) 339, 457, 510, 1066, 1122, 1243
DdeI CTNAG 3 cut(s) 93, 245, 1025
DpnI GATC 5 cut(s) 1016, 1059, 1272, 1394, 1524
DpnII GATC 5 cut(s) 1014, 1057, 1270, 1392, 1522
DriI GACNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 2 cut(s) 283, 866
Eam1104I CTCTTC 2 cut(s) 1160, 1363
Eam1105I GACNNNNNGTC 1 cut(s) 326
EarI CTCTTC 2 cut(s) 1160, 1363
EciI GGCGGA 3 cut(s) 155, 326, 362
Eco130I CCWWGG 4 cut(s) 109, 306, 1142, 1527
Eco31I GGTCTC 1 cut(s) 193
Eco32I GATATC 2 cut(s) 145, 220
Eco47I GGWCC 4 cut(s) 209, 554, 889, 1229
EcoRI GAATTC 1 cut(s) 631
EcoRV GATATC 2 cut(s) 145, 220
EcoT14I CCWWGG 4 cut(s) 109, 306, 1142, 1527
ErhI CCWWGG 4 cut(s) 109, 306, 1142, 1527
FaeI CATG 3 cut(s) 172, 310, 1531
FaqI GGGAC 1 cut(s) 222
FatI CATG 3 cut(s) 168, 306, 1527
FauI CCCGC 1 cut(s) 920
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 9 cut(s) 48, 57, 66, 135, 138, 166, 240, 270, 1340
FokI GGATG 4 cut(s) 92, 95, 876, 1280
Fsp4HI GCNGC 9 cut(s) 48, 57, 66, 135, 138, 166, 240, 270, 1340
FspBI CTAG 2 cut(s) 693, 785
GlaI GCGC 1 cut(s) 273
GluI GCNGC 9 cut(s) 48, 57, 66, 135, 138, 166, 240, 270, 1340
HaeIII GGCC 2 cut(s) 285, 868
HgaI GACGC 2 cut(s) 47, 782
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 6 cut(s) 39, 563, 585, 606, 774, 1277
Hin1II CATG 3 cut(s) 172, 310, 1531
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 4 cut(s) 498, 841, 859, 1072
HindII GTYRAC 4 cut(s) 498, 841, 859, 1072
HpaI GTTAAC 2 cut(s) 498, 859
HphI GGTGA 8 cut(s) 208, 244, 395, 614, 676, 736, 1130, 1533
Hpy166II GTNNAC 7 cut(s) 498, 745, 765, 841, 859, 1072, 1243
Hpy188III TCNNGA 7 cut(s) 411, 716, 770, 1108, 1213, 1457, 1494
Hpy8I GTNNAC 7 cut(s) 498, 745, 765, 841, 859, 1072, 1243
Hpy99I CGWCG 3 cut(s) 41, 590, 611
HpyAV CCTTC 5 cut(s) 308, 818, 1031, 1105, 1292
HpyCH4IV ACGT 8 cut(s) 512, 563, 585, 606, 819, 1068, 1124, 1277
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 53, 56, 62, 65, 146, 236
HpyF3I CTNAG 3 cut(s) 93, 245, 1025
HpySE526I ACGT 8 cut(s) 512, 563, 585, 606, 819, 1068, 1124, 1277
Hsp92I GRCGYC 6 cut(s) 39, 563, 585, 606, 774, 1277
Hsp92II CATG 3 cut(s) 172, 310, 1531
HspAI GCGC 1 cut(s) 272
Kpn2I TCCGGA 1 cut(s) 410
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
KspAI GTTAAC 2 cut(s) 498, 859
Kzo9I GATC 5 cut(s) 1014, 1057, 1270, 1392, 1522
LmnI GCTCC 4 cut(s) 131, 227, 472, 718
Lsp1109I GCAGC 2 cut(s) 34, 121
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 693, 785
MaeII ACGT 8 cut(s) 512, 563, 585, 606, 819, 1068, 1124, 1277
MaeIII GTNAC 6 cut(s) 96, 548, 571, 589, 602, 610
MalI GATC 5 cut(s) 1016, 1059, 1272, 1394, 1524
MbiI CCGCTC 1 cut(s) 230
MboI GATC 5 cut(s) 1014, 1057, 1270, 1392, 1522
MflI RGATCY 1 cut(s) 1057
MlsI TGGCCA 1 cut(s) 868
MluCI AATT 3 cut(s) 631, 1419, 1430
MluNI TGGCCA 1 cut(s) 868
MlyI GAGTC 6 cut(s) 104, 315, 812, 965, 1095, 1230
MmeI TCCRAC 2 cut(s) 561, 1005
Mox20I TGGCCA 1 cut(s) 868
MroI TCCGGA 1 cut(s) 410
MroNI GCCGGC 1 cut(s) 524
MroXI GAANNNNTTC 2 cut(s) 356, 1467
MscI TGGCCA 1 cut(s) 868
MseI TTAA 5 cut(s) 102, 497, 858, 1032, 1043
MslI CAYNNNNRTG 1 cut(s) 1404
Msp20I TGGCCA 1 cut(s) 868
MspR9I CCNGG 4 cut(s) 151, 854, 887, 1545
MvnI CGCG 2 cut(s) 274, 1109
MwoI GCNNNNNNNGC 7 cut(s) 47, 53, 56, 62, 65, 146, 236
NaeI GCCGGC 1 cut(s) 526
NciI CCSGG 4 cut(s) 151, 854, 887, 1545
NcoI CCATGG 2 cut(s) 306, 1527
NdeII GATC 5 cut(s) 1014, 1057, 1270, 1392, 1522
NgoMIV GCCGGC 1 cut(s) 524
NlaIII CATG 3 cut(s) 172, 310, 1531
NlaIV GGNNCC 2 cut(s) 210, 468
NmeAIII GCCGAG 2 cut(s) 67, 802
NmuCI GTSAC 2 cut(s) 96, 602
NruI TCGCGA 1 cut(s) 1109
PaqCI CACCTGC 1 cut(s) 1251
PdiI GCCGGC 1 cut(s) 526
PdmI GAANNNNTTC 2 cut(s) 356, 1467
PfeI GAWTC 5 cut(s) 352, 828, 977, 1047, 1468
Pfl23II CGTACG 1 cut(s) 1065
PkrI GCNGC 9 cut(s) 49, 58, 67, 136, 139, 167, 241, 271, 1341
PleI GAGTC 6 cut(s) 103, 315, 811, 965, 1094, 1229
PpsI GAGTC 6 cut(s) 103, 315, 811, 965, 1094, 1229
Ppu21I YACGTR 2 cut(s) 820, 1125
PspLI CGTACG 1 cut(s) 1065
PspN4I GGNNCC 2 cut(s) 210, 468
PspPI GGNCC 4 cut(s) 209, 554, 889, 1229
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 1 cut(s) 1057
RruI TCGCGA 1 cut(s) 1109
RsaI GTAC 6 cut(s) 340, 458, 511, 1067, 1123, 1244
RsaNI GTAC 6 cut(s) 339, 457, 510, 1066, 1122, 1243
RseI CAYNNNNRTG 1 cut(s) 1404
SaqAI TTAA 5 cut(s) 102, 497, 858, 1032, 1043
SatI GCNGC 9 cut(s) 48, 57, 66, 135, 138, 166, 240, 270, 1340
Sau3AI GATC 5 cut(s) 1014, 1057, 1270, 1392, 1522
Sau96I GGNCC 4 cut(s) 209, 554, 889, 1229
SchI GAGTC 6 cut(s) 104, 315, 812, 965, 1095, 1230
ScrFI CCNGG 4 cut(s) 151, 854, 887, 1545
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 2 cut(s) 704, 964
SinI GGWCC 4 cut(s) 209, 554, 889, 1229
SmiMI CAYNNNNRTG 1 cut(s) 1404
SmlI CTYRAG 2 cut(s) 768, 1455
SmoI CTYRAG 2 cut(s) 768, 1455
Sse9I AATT 3 cut(s) 631, 1419, 1430
SspMI CTAG 2 cut(s) 693, 785
StyD4I CCNGG 4 cut(s) 149, 852, 885, 1543
StyI CCWWGG 4 cut(s) 109, 306, 1142, 1527
TaiI ACGT 8 cut(s) 515, 566, 588, 609, 822, 1071, 1127, 1280
TaqI TCGA 8 cut(s) 330, 360, 756, 813, 948, 1050, 1163, 1493
TaqII GACCGA 1 cut(s) 944
TasI AATT 3 cut(s) 631, 1419, 1430
TauI GCSGC 7 cut(s) 59, 68, 140, 168, 242, 272, 1342
TfiI GAWTC 5 cut(s) 352, 828, 977, 1047, 1468
Tru1I TTAA 5 cut(s) 102, 497, 858, 1032, 1043
Tru9I TTAA 5 cut(s) 102, 497, 858, 1032, 1043
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 2 cut(s) 96, 602
TseI GCWGC 2 cut(s) 47, 134
Tsp45I GTSAC 2 cut(s) 96, 602
TspDTI ATGAA 3 cut(s) 185, 1050, 1388
TspGWI ACGGA 8 cut(s) 95, 536, 567, 590, 876, 1233, 1270, 1431
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 4 cut(s) 209, 554, 889, 1229
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 2 cut(s) 356, 1467
XspI CTAG 2 cut(s) 693, 785
ZraI GACGTC 4 cut(s) 564, 586, 607, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.