AT5G22220

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
7360535 .. 7364505
3971 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22220.3

Sequence Viewer

Length: 1410 bp
ATGTCTGAAGAAGTACCTCAACAATTCCCATCTTCTAAGCGGCAGCTTCATCCTTCTCTTTCTTCTATGAAGCCTCCTCTAGTTGCTCCTGGTGAGTATCACCGGTTTGATGCGGCGGAGACTCGCGGTGGTGGAGCTGTTGCTGATCAGGTTGTCTCTGACGCGATTGTGATCAAATCTACTCTGAAGCGTAAGACAGATTTGGTAAACCAAATAGTTGAGGTCAATGAATTGAATACCGGTGTTCTTCAAACACCTGTATCAGGGAAAGGGGGGAAAGCCAAGAAAACTTCTAGGTCTGCGAAGTCTAATAAGTCTGGAACGCTAGCTTCTGGCTCTAATGCAGGTTCTCCTGGAAATAACTTTGCACAGGCCGGTACTTGTCGATATGATAGTTCGTTAGGTCTTTTGACAAAGAAATTTATCAATTTGATAAAACAAGCAGAGGATGGTATTCTTGATCTAAACAAAGCAGCTGATACTTTAGAGGTACAAAAGAGAAGGATATATGATATAACCAATGTGTTAGAAGGAATAGGTTTGATAGAGAAGACGCTTAAGAACAGGATTCAGTGGAAGGGTCTCGATGTCTCAAAACCAGGAGAAACAATCGAAAGCATAGCTAACCTACAGGATGAAGTACAAAACCTCGCAGCTGAGGAGGCAAGATTAGATGACCAAATCAGAGAATCACAAGAAAGATTAACAAGCTTGAGTGAGGATGAAAACAACAAAAGGTTACTGTTCGTCACTGAAAACGACATTAAGAACCTACCATGCTTCCAGAATAAGACGCTGATAGCTGTAAAGGCACCGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGGCTGGTGGTTATCAGAGGAGGTACAGAATCATTCTGAGAAGCACAATGGGACCAATAGACGTGTACCTAGTCAGTCAATTCGAAGAGAGCTTTGAGGACATTCCTCAGGCTGATGAACCTTCAAATGTTCCTGATGAACCCTCTAATGTCCCTGATGTACCTTCAAATCTTCCATCAACATCTGGTCTCCCTGAGAACCATGATGTATCTATGCCGATGAAAGAGGAAAGCACCGAAAGAAACATGGAAACACAGGAAGTTGATGATACGCAAAGAGTTTACTCTGACATCGAATCTCATGACTTTGTCGATGGTATCATGAAGATTGTTCCTCCAGATTTGGATATGGGTGTAGATTACTGGTTTCGATCAGAGGTAGGCGAAGTCAGCATCACAGACATGTGGCCAGATGAATCTGGACCAGACTGGAACCAGATGATTACATTTGATCAAGACCACGCTGGACCGAGCGACAACAAAATCTTGGAGCAGCCACAAACTCCATCGAGCCCAACACCAGAAGAATCCACTGCTACGAGATCACCTACAGGTAGCTGA

Protein Analysis

469

Amino Acids

51.65

Weight (kDa)

4.64

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 131 - 194 2.6e-27 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 210 - 309 9.2e-35 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 811
AccII CGCG 2 cut(s) 126, 164
AciI CCGC 5 cut(s) 40, 113, 116, 126, 815
AclWI GGATC 1 cut(s) 836
AcoI YGGCCR 1 cut(s) 1256
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 2 cut(s) 27, 206
AfaI GTAC 7 cut(s) 15, 379, 492, 642, 875, 917, 1011
AfiI CCNNNNNNNGG 1 cut(s) 263
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 2 cut(s) 912, 1251
AgeI ACCGGT 2 cut(s) 102, 239
AgsI TTSAA 4 cut(s) 235, 251, 975, 1017
AjiI CACGTC 1 cut(s) 913
AjnI CCWGG 3 cut(s) 88, 352, 598
Alw26I GTCTC 5 cut(s) 113, 160, 587, 595, 1043
AlwI GGATC 1 cut(s) 836
AlwNI CAGNNNCTG 1 cut(s) 845
AoxI GGCC 2 cut(s) 372, 1256
ApeKI GCWGC 4 cut(s) 43, 473, 653, 1342
ApoI RAATTY 1 cut(s) 419
AsiGI ACCGGT 2 cut(s) 102, 239
AspS9I GGNCC 3 cut(s) 902, 1271, 1316
AsuHPI GGTGA 3 cut(s) 92, 104, 1386
AsuII TTCGAA 1 cut(s) 933
AsuNHI GCTAGC 1 cut(s) 325
AvaII GGWCC 3 cut(s) 902, 1271, 1316
AxyI CCTNAGG 1 cut(s) 957
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BalI TGGCCA 1 cut(s) 1258
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 1364
BbsI GAAGAC 1 cut(s) 557
BbvCI CCTCAGC 1 cut(s) 657
BbvI GCAGC 4 cut(s) 55, 485, 665, 1354
BccI CCATC 5 cut(s) 37, 443, 1033, 1157, 1363
BciT130I CCWGG 3 cut(s) 90, 354, 600
BclI TGATCA 3 cut(s) 145, 171, 1300
BcoDI GTCTC 5 cut(s) 113, 160, 587, 595, 1043
BfaI CTAG 4 cut(s) 80, 294, 326, 920
BfmI CTRYAG 2 cut(s) 629, 1398
BfrI CTTAAG 1 cut(s) 557
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 6 cut(s) 41, 44, 114, 474, 654, 1343
BlsI GCNGC 6 cut(s) 42, 45, 115, 475, 655, 1344
Bme1390I CCNGG 3 cut(s) 90, 354, 600
Bme18I GGWCC 3 cut(s) 902, 1271, 1316
BmgBI CACGTC 1 cut(s) 913
BmgT120I GGNCC 3 cut(s) 902, 1271, 1316
BmiI GGNNCC 4 cut(s) 813, 837, 903, 1283
BmrFI CCNGG 3 cut(s) 90, 354, 600
BmsI GCATC 2 cut(s) 100, 1251
BmtI GCTAGC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 557
BpmI CTGGAG 1 cut(s) 1170
Bpu10I CCTNAGC 1 cut(s) 657
Bpu14I TTCGAA 1 cut(s) 933
BpuEI CTTGAG 2 cut(s) 733, 851
BsaBI GATNNNNATC 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 587, 1043
BsaWI WCCGGW 2 cut(s) 102, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse118I RCCGGY 3 cut(s) 102, 239, 374
Bse1I ACTGG 2 cut(s) 1217, 1283
Bse21I CCTNAGG 1 cut(s) 957
Bse8I GATNNNNATC 1 cut(s) 170
BseBI CCWGG 3 cut(s) 90, 354, 600
BseGI GGATG 4 cut(s) 49, 454, 640, 727
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 4 cut(s) 648, 878, 971, 1035
BseNI ACTGG 2 cut(s) 1217, 1283
BseRI GAGGAG 3 cut(s) 66, 674, 883
BseXI GCAGC 4 cut(s) 55, 485, 665, 1354
Bsh1236I CGCG 2 cut(s) 126, 164
BshFI GGCC 2 cut(s) 374, 1258
BshNI GGYRCC 1 cut(s) 811
BshTI ACCGGT 2 cut(s) 102, 239
BsiSI CCGG 3 cut(s) 103, 240, 375
BslFI GGGAC 2 cut(s) 915, 986
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 5 cut(s) 113, 160, 587, 595, 1043
BsmFI GGGAC 2 cut(s) 915, 986
BsnI GGCC 2 cut(s) 374, 1258
Bso31I GGTCTC 2 cut(s) 587, 1043
Bsp119I TTCGAA 1 cut(s) 933
Bsp1286I GDGCHC 1 cut(s) 1364
Bsp143I GATC 7 cut(s) 145, 171, 460, 841, 1220, 1300, 1391
BspACI CCGC 5 cut(s) 40, 113, 116, 126, 815
BspANI GGCC 2 cut(s) 374, 1258
BspCNI CTCAG 4 cut(s) 649, 879, 970, 1036
BspFNI CGCG 2 cut(s) 126, 164
BspHI TCATGA 2 cut(s) 1150, 1170
BspLI GGNNCC 4 cut(s) 813, 837, 903, 1283
BspMI ACCTGC 1 cut(s) 335
BspOI GCTAGC 1 cut(s) 329
BspPI GGATC 1 cut(s) 836
BspT104I TTCGAA 1 cut(s) 933
BspT107I GGYRCC 1 cut(s) 811
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 2 cut(s) 587, 1043
BsrFI RCCGGY 3 cut(s) 102, 239, 374
BsrI ACTGG 2 cut(s) 1217, 1283
BssAI RCCGGY 3 cut(s) 102, 239, 374
BssMI GATC 7 cut(s) 145, 171, 460, 841, 1220, 1300, 1391
Bst2UI CCWGG 3 cut(s) 90, 354, 600
Bst4CI ACNGT 1 cut(s) 744
Bst6I CTCTTC 1 cut(s) 930
BstAFI CTTAAG 1 cut(s) 557
BstBI TTCGAA 1 cut(s) 933
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 5 cut(s) 36, 657, 887, 957, 1044
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 49, 454, 640, 727
BstFNI CGCG 2 cut(s) 126, 164
BstKTI GATC 7 cut(s) 148, 174, 463, 844, 1223, 1303, 1394
BstMAI GTCTC 5 cut(s) 113, 160, 587, 595, 1043
BstMBI GATC 7 cut(s) 145, 171, 460, 841, 1220, 1300, 1391
BstMWI GCNNNNNNNGC 3 cut(s) 662, 809, 1239
BstNI CCWGG 3 cut(s) 90, 354, 600
BstNSI RCATGY 1 cut(s) 1255
BstSCI CCNGG 3 cut(s) 88, 352, 598
BstSFI CTRYAG 2 cut(s) 629, 1398
BstUI CGCG 2 cut(s) 126, 164
BstV1I GCAGC 4 cut(s) 55, 485, 665, 1354
BstV2I GAAGAC 1 cut(s) 557
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
Bsu36I CCTNAGG 1 cut(s) 957
BsuRI GGCC 2 cut(s) 374, 1258
BtrI CACGTC 1 cut(s) 913
BtsCI GGATG 4 cut(s) 49, 454, 640, 727
BtsI GCAGTG 1 cut(s) 1380
BtsIMutI CAGTG 3 cut(s) 578, 750, 1380
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 327
CaiI CAGNNNCTG 1 cut(s) 845
CciI TCATGA 2 cut(s) 1150, 1170
Cfr10I RCCGGY 3 cut(s) 102, 239, 374
Cfr13I GGNCC 3 cut(s) 902, 1271, 1316
CseI GACGC 3 cut(s) 170, 562, 802
Csp6I GTAC 7 cut(s) 14, 378, 491, 641, 874, 916, 1010
CspAI ACCGGT 2 cut(s) 102, 239
CviAII CATG 7 cut(s) 777, 818, 1052, 1096, 1151, 1171, 1252
CviQI GTAC 7 cut(s) 14, 378, 491, 641, 874, 916, 1010
DdeI CTNAG 5 cut(s) 36, 657, 887, 957, 1044
DpnI GATC 7 cut(s) 147, 173, 462, 843, 1222, 1302, 1393
DpnII GATC 7 cut(s) 145, 171, 460, 841, 1220, 1300, 1391
EaeI YGGCCR 1 cut(s) 1256
Eam1104I CTCTTC 1 cut(s) 930
EarI CTCTTC 1 cut(s) 930
EciI GGCGGA 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 1364
Eco31I GGTCTC 2 cut(s) 587, 1043
Eco47I GGWCC 3 cut(s) 902, 1271, 1316
Eco57I CTGAAG 2 cut(s) 27, 206
Eco81I CCTNAGG 1 cut(s) 957
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRII CCWGG 3 cut(s) 88, 352, 598
EcoT38I GRGCYC 1 cut(s) 1364
FaeI CATG 7 cut(s) 780, 821, 1055, 1099, 1154, 1174, 1255
FaqI GGGAC 2 cut(s) 915, 986
FatI CATG 7 cut(s) 776, 817, 1051, 1095, 1150, 1170, 1251
FbaI TGATCA 3 cut(s) 145, 171, 1300
Fnu4HI GCNGC 6 cut(s) 41, 44, 114, 474, 654, 1343
FokI GGATG 4 cut(s) 36, 461, 647, 734
FriOI GRGCYC 1 cut(s) 1364
Fsp4HI GCNGC 6 cut(s) 41, 44, 114, 474, 654, 1343
FspBI CTAG 4 cut(s) 80, 294, 326, 920
GluI GCNGC 6 cut(s) 41, 44, 114, 474, 654, 1343
GsuI CTGGAG 1 cut(s) 1170
HaeIII GGCC 2 cut(s) 374, 1258
HapII CCGG 3 cut(s) 103, 240, 375
HgaI GACGC 3 cut(s) 170, 562, 802
Hin1II CATG 7 cut(s) 780, 821, 1055, 1099, 1154, 1174, 1255
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 7 cut(s) 121, 568, 689, 879, 1145, 1265, 1376
HpaII CCGG 3 cut(s) 103, 240, 375
HphI GGTGA 3 cut(s) 92, 104, 1386
Hpy166II GTNNAC 3 cut(s) 208, 916, 1132
Hpy188I TCNGA 8 cut(s) 7, 160, 186, 686, 867, 888, 1138, 1225
Hpy8I GTNNAC 3 cut(s) 208, 916, 1132
HpyAV CCTTC 6 cut(s) 63, 495, 524, 571, 981, 1023
HpyCH4III ACNGT 1 cut(s) 744
HpyCH4IV ACGT 1 cut(s) 912
HpyCH4V TGCA 2 cut(s) 344, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 662, 809, 1239
HpyF3I CTNAG 5 cut(s) 36, 657, 887, 957, 1044
HpySE526I ACGT 1 cut(s) 912
Hsp92II CATG 7 cut(s) 780, 821, 1055, 1099, 1154, 1174, 1255
Ksp22I TGATCA 3 cut(s) 145, 171, 1300
Kzo9I GATC 7 cut(s) 145, 171, 460, 841, 1220, 1300, 1391
LmnI GCTCC 3 cut(s) 91, 134, 1339
Lsp1109I GCAGC 4 cut(s) 55, 485, 665, 1354
LweI GCATC 2 cut(s) 100, 1251
MaeI CTAG 4 cut(s) 80, 294, 326, 920
MaeII ACGT 1 cut(s) 912
MaeIII GTNAC 2 cut(s) 738, 748
MalI GATC 7 cut(s) 147, 173, 462, 843, 1222, 1302, 1393
MboI GATC 7 cut(s) 145, 171, 460, 841, 1220, 1300, 1391
MboII GAAGA 9 cut(s) 20, 24, 54, 239, 562, 947, 1013, 1186, 1385
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 1 cut(s) 1364
MlsI TGGCCA 1 cut(s) 1258
MluCI AATT 5 cut(s) 23, 230, 419, 427, 929
MluNI TGGCCA 1 cut(s) 1258
MlyI GAGTC 1 cut(s) 115
Mox20I TGGCCA 1 cut(s) 1258
MscI TGGCCA 1 cut(s) 1258
MseI TTAA 3 cut(s) 558, 704, 765
MslI CAYNNNNRTG 1 cut(s) 1250
Msp20I TGGCCA 1 cut(s) 1258
MspA1I CMGCKG 2 cut(s) 476, 656
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 3 cut(s) 103, 240, 375
MspR9I CCNGG 3 cut(s) 90, 354, 600
MvaI CCWGG 3 cut(s) 90, 354, 600
MvnI CGCG 2 cut(s) 126, 164
MwoI GCNNNNNNNGC 3 cut(s) 662, 809, 1239
NdeII GATC 7 cut(s) 145, 171, 460, 841, 1220, 1300, 1391
NheI GCTAGC 1 cut(s) 325
NlaIII CATG 7 cut(s) 780, 821, 1055, 1099, 1154, 1174, 1255
NlaIV GGNNCC 4 cut(s) 813, 837, 903, 1283
NmuCI GTSAC 1 cut(s) 748
NspI RCATGY 1 cut(s) 1255
NspV TTCGAA 1 cut(s) 933
PagI TCATGA 2 cut(s) 1150, 1170
PciI ACATGT 1 cut(s) 1251
PfeI GAWTC 6 cut(s) 568, 689, 879, 1145, 1265, 1376
PflFI GACNNNGTC 1 cut(s) 1157
PfoI TCCNGGA 1 cut(s) 352
PinAI ACCGGT 2 cut(s) 102, 239
PkrI GCNGC 6 cut(s) 42, 45, 115, 475, 655, 1344
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PscI ACATGT 1 cut(s) 1251
Psp6I CCWGG 3 cut(s) 88, 352, 598
PspGI CCWGG 3 cut(s) 88, 352, 598
PspN4I GGNNCC 4 cut(s) 813, 837, 903, 1283
PspPI GGNCC 3 cut(s) 902, 1271, 1316
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 1 cut(s) 841
PsyI GACNNNGTC 1 cut(s) 1157
PvuII CAGCTG 2 cut(s) 476, 656
RsaI GTAC 7 cut(s) 15, 379, 492, 642, 875, 917, 1011
RsaNI GTAC 7 cut(s) 14, 378, 491, 641, 874, 916, 1010
RseI CAYNNNNRTG 1 cut(s) 1250
SaqAI TTAA 3 cut(s) 558, 704, 765
SatI GCNGC 6 cut(s) 41, 44, 114, 474, 654, 1343
Sau3AI GATC 7 cut(s) 145, 171, 460, 841, 1220, 1300, 1391
Sau96I GGNCC 3 cut(s) 902, 1271, 1316
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 3 cut(s) 90, 354, 600
SduI GDGCHC 1 cut(s) 1364
SfaNI GCATC 2 cut(s) 100, 1251
SfcI CTRYAG 2 cut(s) 629, 1398
SfuI TTCGAA 1 cut(s) 933
SinI GGWCC 3 cut(s) 902, 1271, 1316
SmiMI CAYNNNNRTG 1 cut(s) 1250
SmlI CTYRAG 3 cut(s) 557, 712, 830
SmoI CTYRAG 3 cut(s) 557, 712, 830
Sse9I AATT 5 cut(s) 23, 230, 419, 427, 929
SsiI CCGC 5 cut(s) 40, 113, 116, 126, 815
SspMI CTAG 4 cut(s) 80, 294, 326, 920
StyD4I CCNGG 3 cut(s) 88, 352, 598
TaaI ACNGT 1 cut(s) 744
TaiI ACGT 1 cut(s) 915
TaqI TCGA 8 cut(s) 385, 585, 612, 933, 1143, 1161, 1219, 1358
TaqII GACCGA 1 cut(s) 1333
TasI AATT 5 cut(s) 23, 230, 419, 427, 929
TatI WGTACW 1 cut(s) 640
TauI GCSGC 2 cut(s) 43, 116
TfiI GAWTC 6 cut(s) 568, 689, 879, 1145, 1265, 1376
Tru1I TTAA 3 cut(s) 558, 704, 765
Tru9I TTAA 3 cut(s) 558, 704, 765
TscAI CASTG 3 cut(s) 578, 757, 1387
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 4 cut(s) 43, 473, 653, 1342
Tsp45I GTSAC 1 cut(s) 748
TspRI CASTG 3 cut(s) 578, 757, 1387
Tth111I GACNNNGTC 1 cut(s) 1157
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 902, 1271, 1316
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 1255
XspI CTAG 4 cut(s) 80, 294, 326, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.