Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22220 AT5G22220 |
| fragaria_vesca | FvH4_3g25990 FvH4_3g25990 FvH4_3g25990 FvH4_3g25990 FvH4_3g25990 |
| malus_domestica | MD03G1152700.v1.1 MD11G1172700.v1.1 |
| prunus_persica | Prupe.6G139900_v2.0.a1 Prupe.6G139900_v2.0.a1 |
| pyrus_communis | pycom03g10660 pycom11g14570 |
| rosa_chinensis | RchiOBHm_Chr5g0047281 |
| rosa_laevigata | RLG00000034486 |
| rosa_multiflora | Rmu_sc0003154.1_g000003 Rmu_sc0003441.1_g000098 |
| rosa_roxburghii | Rroxscaffold_1G00034080 |
| rosa_rugosa | Rorug05G0235400 |
| rosa_samantha | Rh5AG314400 Rh5BG323100 Rh5CG350300 Rh5DG333900 |
| rosa_wichuraiana | Rw5G029390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 335 |
| AccB1I | GGYRCC | 1 cut(s) | 811 |
| AccII | CGCG | 2 cut(s) | 126, 164 |
| AciI | CCGC | 5 cut(s) | 40, 113, 116, 126, 815 |
| AclWI | GGATC | 1 cut(s) | 836 |
| AcoI | YGGCCR | 1 cut(s) | 1256 |
| AcsI | RAATTY | 1 cut(s) | 419 |
| AcuI | CTGAAG | 2 cut(s) | 27, 206 |
| AfaI | GTAC | 7 cut(s) | 15, 379, 492, 642, 875, 917, 1011 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 263 |
| AflII | CTTAAG | 1 cut(s) | 557 |
| AflIII | ACRYGT | 2 cut(s) | 912, 1251 |
| AgeI | ACCGGT | 2 cut(s) | 102, 239 |
| AgsI | TTSAA | 4 cut(s) | 235, 251, 975, 1017 |
| AjiI | CACGTC | 1 cut(s) | 913 |
| AjnI | CCWGG | 3 cut(s) | 88, 352, 598 |
| Alw26I | GTCTC | 5 cut(s) | 113, 160, 587, 595, 1043 |
| AlwI | GGATC | 1 cut(s) | 836 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 845 |
| AoxI | GGCC | 2 cut(s) | 372, 1256 |
| ApeKI | GCWGC | 4 cut(s) | 43, 473, 653, 1342 |
| ApoI | RAATTY | 1 cut(s) | 419 |
| AsiGI | ACCGGT | 2 cut(s) | 102, 239 |
| AspS9I | GGNCC | 3 cut(s) | 902, 1271, 1316 |
| AsuHPI | GGTGA | 3 cut(s) | 92, 104, 1386 |
| AsuII | TTCGAA | 1 cut(s) | 933 |
| AsuNHI | GCTAGC | 1 cut(s) | 325 |
| AvaII | GGWCC | 3 cut(s) | 902, 1271, 1316 |
| AxyI | CCTNAGG | 1 cut(s) | 957 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 243, 276 |
| BalI | TGGCCA | 1 cut(s) | 1258 |
| BanI | GGYRCC | 1 cut(s) | 811 |
| BanII | GRGCYC | 1 cut(s) | 1364 |
| BbsI | GAAGAC | 1 cut(s) | 557 |
| BbvCI | CCTCAGC | 1 cut(s) | 657 |
| BbvI | GCAGC | 4 cut(s) | 55, 485, 665, 1354 |
| BccI | CCATC | 5 cut(s) | 37, 443, 1033, 1157, 1363 |
| BciT130I | CCWGG | 3 cut(s) | 90, 354, 600 |
| BclI | TGATCA | 3 cut(s) | 145, 171, 1300 |
| BcoDI | GTCTC | 5 cut(s) | 113, 160, 587, 595, 1043 |
| BfaI | CTAG | 4 cut(s) | 80, 294, 326, 920 |
| BfmI | CTRYAG | 2 cut(s) | 629, 1398 |
| BfrI | CTTAAG | 1 cut(s) | 557 |
| BfuAI | ACCTGC | 1 cut(s) | 335 |
| BisI | GCNGC | 6 cut(s) | 41, 44, 114, 474, 654, 1343 |
| BlsI | GCNGC | 6 cut(s) | 42, 45, 115, 475, 655, 1344 |
| Bme1390I | CCNGG | 3 cut(s) | 90, 354, 600 |
| Bme18I | GGWCC | 3 cut(s) | 902, 1271, 1316 |
| BmgBI | CACGTC | 1 cut(s) | 913 |
| BmgT120I | GGNCC | 3 cut(s) | 902, 1271, 1316 |
| BmiI | GGNNCC | 4 cut(s) | 813, 837, 903, 1283 |
| BmrFI | CCNGG | 3 cut(s) | 90, 354, 600 |
| BmsI | GCATC | 2 cut(s) | 100, 1251 |
| BmtI | GCTAGC | 1 cut(s) | 329 |
| BpiI | GAAGAC | 1 cut(s) | 557 |
| BpmI | CTGGAG | 1 cut(s) | 1170 |
| Bpu10I | CCTNAGC | 1 cut(s) | 657 |
| Bpu14I | TTCGAA | 1 cut(s) | 933 |
| BpuEI | CTTGAG | 2 cut(s) | 733, 851 |
| BsaBI | GATNNNNATC | 1 cut(s) | 170 |
| BsaI | GGTCTC | 2 cut(s) | 587, 1043 |
| BsaWI | WCCGGW | 2 cut(s) | 102, 239 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 263 |
| Bse118I | RCCGGY | 3 cut(s) | 102, 239, 374 |
| Bse1I | ACTGG | 2 cut(s) | 1217, 1283 |
| Bse21I | CCTNAGG | 1 cut(s) | 957 |
| Bse8I | GATNNNNATC | 1 cut(s) | 170 |
| BseBI | CCWGG | 3 cut(s) | 90, 354, 600 |
| BseGI | GGATG | 4 cut(s) | 49, 454, 640, 727 |
| BseJI | GATNNNNATC | 1 cut(s) | 170 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 263 |
| BseMII | CTCAG | 4 cut(s) | 648, 878, 971, 1035 |
| BseNI | ACTGG | 2 cut(s) | 1217, 1283 |
| BseRI | GAGGAG | 3 cut(s) | 66, 674, 883 |
| BseXI | GCAGC | 4 cut(s) | 55, 485, 665, 1354 |
| Bsh1236I | CGCG | 2 cut(s) | 126, 164 |
| BshFI | GGCC | 2 cut(s) | 374, 1258 |
| BshNI | GGYRCC | 1 cut(s) | 811 |
| BshTI | ACCGGT | 2 cut(s) | 102, 239 |
| BsiSI | CCGG | 3 cut(s) | 103, 240, 375 |
| BslFI | GGGAC | 2 cut(s) | 915, 986 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 263 |
| BsmAI | GTCTC | 5 cut(s) | 113, 160, 587, 595, 1043 |
| BsmFI | GGGAC | 2 cut(s) | 915, 986 |
| BsnI | GGCC | 2 cut(s) | 374, 1258 |
| Bso31I | GGTCTC | 2 cut(s) | 587, 1043 |
| Bsp119I | TTCGAA | 1 cut(s) | 933 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1364 |
| Bsp143I | GATC | 7 cut(s) | 145, 171, 460, 841, 1220, 1300, 1391 |
| BspACI | CCGC | 5 cut(s) | 40, 113, 116, 126, 815 |
| BspANI | GGCC | 2 cut(s) | 374, 1258 |
| BspCNI | CTCAG | 4 cut(s) | 649, 879, 970, 1036 |
| BspFNI | CGCG | 2 cut(s) | 126, 164 |
| BspHI | TCATGA | 2 cut(s) | 1150, 1170 |
| BspLI | GGNNCC | 4 cut(s) | 813, 837, 903, 1283 |
| BspMI | ACCTGC | 1 cut(s) | 335 |
| BspOI | GCTAGC | 1 cut(s) | 329 |
| BspPI | GGATC | 1 cut(s) | 836 |
| BspT104I | TTCGAA | 1 cut(s) | 933 |
| BspT107I | GGYRCC | 1 cut(s) | 811 |
| BspTI | CTTAAG | 1 cut(s) | 557 |
| BspTNI | GGTCTC | 2 cut(s) | 587, 1043 |
| BsrFI | RCCGGY | 3 cut(s) | 102, 239, 374 |
| BsrI | ACTGG | 2 cut(s) | 1217, 1283 |
| BssAI | RCCGGY | 3 cut(s) | 102, 239, 374 |
| BssMI | GATC | 7 cut(s) | 145, 171, 460, 841, 1220, 1300, 1391 |
| Bst2UI | CCWGG | 3 cut(s) | 90, 354, 600 |
| Bst4CI | ACNGT | 1 cut(s) | 744 |
| Bst6I | CTCTTC | 1 cut(s) | 930 |
| BstAFI | CTTAAG | 1 cut(s) | 557 |
| BstBI | TTCGAA | 1 cut(s) | 933 |
| BstC8I | GCNNGC | 1 cut(s) | 327 |
| BstDEI | CTNAG | 5 cut(s) | 36, 657, 887, 957, 1044 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 261 |
| BstF5I | GGATG | 4 cut(s) | 49, 454, 640, 727 |
| BstFNI | CGCG | 2 cut(s) | 126, 164 |
| BstKTI | GATC | 7 cut(s) | 148, 174, 463, 844, 1223, 1303, 1394 |
| BstMAI | GTCTC | 5 cut(s) | 113, 160, 587, 595, 1043 |
| BstMBI | GATC | 7 cut(s) | 145, 171, 460, 841, 1220, 1300, 1391 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 662, 809, 1239 |
| BstNI | CCWGG | 3 cut(s) | 90, 354, 600 |
| BstNSI | RCATGY | 1 cut(s) | 1255 |
| BstSCI | CCNGG | 3 cut(s) | 88, 352, 598 |
| BstSFI | CTRYAG | 2 cut(s) | 629, 1398 |
| BstUI | CGCG | 2 cut(s) | 126, 164 |
| BstV1I | GCAGC | 4 cut(s) | 55, 485, 665, 1354 |
| BstV2I | GAAGAC | 1 cut(s) | 557 |
| BstX2I | RGATCY | 1 cut(s) | 841 |
| BstYI | RGATCY | 1 cut(s) | 841 |
| Bsu36I | CCTNAGG | 1 cut(s) | 957 |
| BsuRI | GGCC | 2 cut(s) | 374, 1258 |
| BtrI | CACGTC | 1 cut(s) | 913 |
| BtsCI | GGATG | 4 cut(s) | 49, 454, 640, 727 |
| BtsI | GCAGTG | 1 cut(s) | 1380 |
| BtsIMutI | CAGTG | 3 cut(s) | 578, 750, 1380 |
| BveI | ACCTGC | 1 cut(s) | 335 |
| Cac8I | GCNNGC | 1 cut(s) | 327 |
| CaiI | CAGNNNCTG | 1 cut(s) | 845 |
| CciI | TCATGA | 2 cut(s) | 1150, 1170 |
| Cfr10I | RCCGGY | 3 cut(s) | 102, 239, 374 |
| Cfr13I | GGNCC | 3 cut(s) | 902, 1271, 1316 |
| CseI | GACGC | 3 cut(s) | 170, 562, 802 |
| Csp6I | GTAC | 7 cut(s) | 14, 378, 491, 641, 874, 916, 1010 |
| CspAI | ACCGGT | 2 cut(s) | 102, 239 |
| CviAII | CATG | 7 cut(s) | 777, 818, 1052, 1096, 1151, 1171, 1252 |
| CviQI | GTAC | 7 cut(s) | 14, 378, 491, 641, 874, 916, 1010 |
| DdeI | CTNAG | 5 cut(s) | 36, 657, 887, 957, 1044 |
| DpnI | GATC | 7 cut(s) | 147, 173, 462, 843, 1222, 1302, 1393 |
| DpnII | GATC | 7 cut(s) | 145, 171, 460, 841, 1220, 1300, 1391 |
| EaeI | YGGCCR | 1 cut(s) | 1256 |
| Eam1104I | CTCTTC | 1 cut(s) | 930 |
| EarI | CTCTTC | 1 cut(s) | 930 |
| EciI | GGCGGA | 1 cut(s) | 131 |
| Eco24I | GRGCYC | 1 cut(s) | 1364 |
| Eco31I | GGTCTC | 2 cut(s) | 587, 1043 |
| Eco47I | GGWCC | 3 cut(s) | 902, 1271, 1316 |
| Eco57I | CTGAAG | 2 cut(s) | 27, 206 |
| Eco81I | CCTNAGG | 1 cut(s) | 957 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 261 |
| EcoRII | CCWGG | 3 cut(s) | 88, 352, 598 |
| EcoT38I | GRGCYC | 1 cut(s) | 1364 |
| FaeI | CATG | 7 cut(s) | 780, 821, 1055, 1099, 1154, 1174, 1255 |
| FaqI | GGGAC | 2 cut(s) | 915, 986 |
| FatI | CATG | 7 cut(s) | 776, 817, 1051, 1095, 1150, 1170, 1251 |
| FbaI | TGATCA | 3 cut(s) | 145, 171, 1300 |
| Fnu4HI | GCNGC | 6 cut(s) | 41, 44, 114, 474, 654, 1343 |
| FokI | GGATG | 4 cut(s) | 36, 461, 647, 734 |
| FriOI | GRGCYC | 1 cut(s) | 1364 |
| Fsp4HI | GCNGC | 6 cut(s) | 41, 44, 114, 474, 654, 1343 |
| FspBI | CTAG | 4 cut(s) | 80, 294, 326, 920 |
| GluI | GCNGC | 6 cut(s) | 41, 44, 114, 474, 654, 1343 |
| GsuI | CTGGAG | 1 cut(s) | 1170 |
| HaeIII | GGCC | 2 cut(s) | 374, 1258 |
| HapII | CCGG | 3 cut(s) | 103, 240, 375 |
| HgaI | GACGC | 3 cut(s) | 170, 562, 802 |
| Hin1II | CATG | 7 cut(s) | 780, 821, 1055, 1099, 1154, 1174, 1255 |
| HindIII | AAGCTT | 1 cut(s) | 709 |
| HinfI | GANTC | 7 cut(s) | 121, 568, 689, 879, 1145, 1265, 1376 |
| HpaII | CCGG | 3 cut(s) | 103, 240, 375 |
| HphI | GGTGA | 3 cut(s) | 92, 104, 1386 |
| Hpy166II | GTNNAC | 3 cut(s) | 208, 916, 1132 |
| Hpy188I | TCNGA | 8 cut(s) | 7, 160, 186, 686, 867, 888, 1138, 1225 |
| Hpy8I | GTNNAC | 3 cut(s) | 208, 916, 1132 |
| HpyAV | CCTTC | 6 cut(s) | 63, 495, 524, 571, 981, 1023 |
| HpyCH4III | ACNGT | 1 cut(s) | 744 |
| HpyCH4IV | ACGT | 1 cut(s) | 912 |
| HpyCH4V | TGCA | 2 cut(s) | 344, 368 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 662, 809, 1239 |
| HpyF3I | CTNAG | 5 cut(s) | 36, 657, 887, 957, 1044 |
| HpySE526I | ACGT | 1 cut(s) | 912 |
| Hsp92II | CATG | 7 cut(s) | 780, 821, 1055, 1099, 1154, 1174, 1255 |
| Ksp22I | TGATCA | 3 cut(s) | 145, 171, 1300 |
| Kzo9I | GATC | 7 cut(s) | 145, 171, 460, 841, 1220, 1300, 1391 |
| LmnI | GCTCC | 3 cut(s) | 91, 134, 1339 |
| Lsp1109I | GCAGC | 4 cut(s) | 55, 485, 665, 1354 |
| LweI | GCATC | 2 cut(s) | 100, 1251 |
| MaeI | CTAG | 4 cut(s) | 80, 294, 326, 920 |
| MaeII | ACGT | 1 cut(s) | 912 |
| MaeIII | GTNAC | 2 cut(s) | 738, 748 |
| MalI | GATC | 7 cut(s) | 147, 173, 462, 843, 1222, 1302, 1393 |
| MboI | GATC | 7 cut(s) | 145, 171, 460, 841, 1220, 1300, 1391 |
| MboII | GAAGA | 9 cut(s) | 20, 24, 54, 239, 562, 947, 1013, 1186, 1385 |
| MflI | RGATCY | 1 cut(s) | 841 |
| MhlI | GDGCHC | 1 cut(s) | 1364 |
| MlsI | TGGCCA | 1 cut(s) | 1258 |
| MluCI | AATT | 5 cut(s) | 23, 230, 419, 427, 929 |
| MluNI | TGGCCA | 1 cut(s) | 1258 |
| MlyI | GAGTC | 1 cut(s) | 115 |
| Mox20I | TGGCCA | 1 cut(s) | 1258 |
| MscI | TGGCCA | 1 cut(s) | 1258 |
| MseI | TTAA | 3 cut(s) | 558, 704, 765 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1250 |
| Msp20I | TGGCCA | 1 cut(s) | 1258 |
| MspA1I | CMGCKG | 2 cut(s) | 476, 656 |
| MspCI | CTTAAG | 1 cut(s) | 557 |
| MspI | CCGG | 3 cut(s) | 103, 240, 375 |
| MspR9I | CCNGG | 3 cut(s) | 90, 354, 600 |
| MvaI | CCWGG | 3 cut(s) | 90, 354, 600 |
| MvnI | CGCG | 2 cut(s) | 126, 164 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 662, 809, 1239 |
| NdeII | GATC | 7 cut(s) | 145, 171, 460, 841, 1220, 1300, 1391 |
| NheI | GCTAGC | 1 cut(s) | 325 |
| NlaIII | CATG | 7 cut(s) | 780, 821, 1055, 1099, 1154, 1174, 1255 |
| NlaIV | GGNNCC | 4 cut(s) | 813, 837, 903, 1283 |
| NmuCI | GTSAC | 1 cut(s) | 748 |
| NspI | RCATGY | 1 cut(s) | 1255 |
| NspV | TTCGAA | 1 cut(s) | 933 |
| PagI | TCATGA | 2 cut(s) | 1150, 1170 |
| PciI | ACATGT | 1 cut(s) | 1251 |
| PfeI | GAWTC | 6 cut(s) | 568, 689, 879, 1145, 1265, 1376 |
| PflFI | GACNNNGTC | 1 cut(s) | 1157 |
| PfoI | TCCNGGA | 1 cut(s) | 352 |
| PinAI | ACCGGT | 2 cut(s) | 102, 239 |
| PkrI | GCNGC | 6 cut(s) | 42, 45, 115, 475, 655, 1344 |
| PleI | GAGTC | 1 cut(s) | 115 |
| PpsI | GAGTC | 1 cut(s) | 115 |
| PscI | ACATGT | 1 cut(s) | 1251 |
| Psp6I | CCWGG | 3 cut(s) | 88, 352, 598 |
| PspGI | CCWGG | 3 cut(s) | 88, 352, 598 |
| PspN4I | GGNNCC | 4 cut(s) | 813, 837, 903, 1283 |
| PspPI | GGNCC | 3 cut(s) | 902, 1271, 1316 |
| PstNI | CAGNNNCTG | 1 cut(s) | 845 |
| PsuI | RGATCY | 1 cut(s) | 841 |
| PsyI | GACNNNGTC | 1 cut(s) | 1157 |
| PvuII | CAGCTG | 2 cut(s) | 476, 656 |
| RsaI | GTAC | 7 cut(s) | 15, 379, 492, 642, 875, 917, 1011 |
| RsaNI | GTAC | 7 cut(s) | 14, 378, 491, 641, 874, 916, 1010 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1250 |
| SaqAI | TTAA | 3 cut(s) | 558, 704, 765 |
| SatI | GCNGC | 6 cut(s) | 41, 44, 114, 474, 654, 1343 |
| Sau3AI | GATC | 7 cut(s) | 145, 171, 460, 841, 1220, 1300, 1391 |
| Sau96I | GGNCC | 3 cut(s) | 902, 1271, 1316 |
| SchI | GAGTC | 1 cut(s) | 115 |
| ScrFI | CCNGG | 3 cut(s) | 90, 354, 600 |
| SduI | GDGCHC | 1 cut(s) | 1364 |
| SfaNI | GCATC | 2 cut(s) | 100, 1251 |
| SfcI | CTRYAG | 2 cut(s) | 629, 1398 |
| SfuI | TTCGAA | 1 cut(s) | 933 |
| SinI | GGWCC | 3 cut(s) | 902, 1271, 1316 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1250 |
| SmlI | CTYRAG | 3 cut(s) | 557, 712, 830 |
| SmoI | CTYRAG | 3 cut(s) | 557, 712, 830 |
| Sse9I | AATT | 5 cut(s) | 23, 230, 419, 427, 929 |
| SsiI | CCGC | 5 cut(s) | 40, 113, 116, 126, 815 |
| SspMI | CTAG | 4 cut(s) | 80, 294, 326, 920 |
| StyD4I | CCNGG | 3 cut(s) | 88, 352, 598 |
| TaaI | ACNGT | 1 cut(s) | 744 |
| TaiI | ACGT | 1 cut(s) | 915 |
| TaqI | TCGA | 8 cut(s) | 385, 585, 612, 933, 1143, 1161, 1219, 1358 |
| TaqII | GACCGA | 1 cut(s) | 1333 |
| TasI | AATT | 5 cut(s) | 23, 230, 419, 427, 929 |
| TatI | WGTACW | 1 cut(s) | 640 |
| TauI | GCSGC | 2 cut(s) | 43, 116 |
| TfiI | GAWTC | 6 cut(s) | 568, 689, 879, 1145, 1265, 1376 |
| Tru1I | TTAA | 3 cut(s) | 558, 704, 765 |
| Tru9I | TTAA | 3 cut(s) | 558, 704, 765 |
| TscAI | CASTG | 3 cut(s) | 578, 757, 1387 |
| TseFI | GTSAC | 1 cut(s) | 748 |
| TseI | GCWGC | 4 cut(s) | 43, 473, 653, 1342 |
| Tsp45I | GTSAC | 1 cut(s) | 748 |
| TspRI | CASTG | 3 cut(s) | 578, 757, 1387 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1157 |
| Vha464I | CTTAAG | 1 cut(s) | 557 |
| VpaK11BI | GGWCC | 3 cut(s) | 902, 1271, 1316 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 261 |
| XapI | RAATTY | 1 cut(s) | 419 |
| XceI | RCATGY | 1 cut(s) | 1255 |
| XspI | CTAG | 4 cut(s) | 80, 294, 326, 920 |