Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003441.1

Orthogroup ID

OG0007637

Physical Location & Seq

Genomic Coordinates Forward (+)

397673 .. 403402

Gene Structure 5730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003441.1_g000098.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

atgtcgggttaccgcgctccgaaccccccgcctccccaaccgccccagcgccagctccccttctcctccctcaagccgcccttctctgcttcactcgactaccacgccttcgctcccgaccgccgcccgccgccgccccccgatcacctgcccgccgagggcattaccgtcaagccccccctaaagcggaagagtgatacggcagattatgacgagcctaatgatagggcagctgctcctgagtacactgacatagttaatagcccacttcaaactcctgtgccagtcaaggtgggaaaggcaaacaaagcatctaggctttcaaagctcaatagagctgggccgcagactcctgcttccaacgtgggttctccttctggcgctaatcttactcctgctggtccttgtcgttatgacagctccctaggtctcttaacgaagaagtttatcaatctgatcaaacatgccgaagatggtattctagatctcaataaagctgctgatactctagagctaaagcggaagagtgatacggcagattatgacgagcctaatgatagggcagctgctcctgagtacactgacatagttaatagcccacttcaaactcctgtgccagtcaaggtgggaaaggcaaacaaagcatctaggctttcaaagctcaatagagctgggccgcagactcctgcttccaacgtgggttctccttctggcgctaatcttactcctgctggtccttgtcgttatgacagctccctaggtctcttaacgaagaagtttatcaatctgatcaaacatgccgaagatggtattctagatctcaataaagctgctgatactctagaggtacaaaagagacggatatatgacataacaaatgttctcgaaggaattggcctcatagaaaagaagctgaaaaatagaattcagtggaagggacttgaggccacaaggacaggagacgcagatgaaaactatgatggtttgaaggcacaagttgaaaacctatctacggaggagggcagattagatgagcaaataagagaaatgcaggaaagattgagcaatctcagtgaagaggaaagcaataagaaatggctttttgtcactgaagaagacatcaagggcttaccctgctttcagaatgaaaccttaatagcgattaaagctccccacggcaccactcttgaagtcccagatcctgacgaggctgttgactatccccaaaggagatacaggatggtcctgcgaagcatgatgggtccaatagatgtttaccttgtcagtcaatttgaggagaagttcgaggagattaatggtgccgaagaacctggaagtatcccttcaacttcggggttatgtgaaaacccagctccaacaattgtcaatgaggatacggggaagcatgttgaaatgcagggacaagaagatcatagagtttccgctgatcccactgcttctcaggacttcatgagtgggattatgaagattgttccctcagatgtaaattccatctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032989 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045893 GO:0045935 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051302 GO:0051445 GO:0051446 GO:0051726 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko01522 ko03018 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map03018 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

E2F_CC-MB E2F_TDP

Protein Analysis

506

Amino Acids

55.43

Weight (kDa)

5.32

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22220 AT5G22220
fragaria_vesca	FvH4_3g25990 FvH4_3g25990 FvH4_3g25990 FvH4_3g25990 FvH4_3g25990
malus_domestica	MD03G1152700.v1.1 MD11G1172700.v1.1
prunus_persica	Prupe.6G139900_v2.0.a1 Prupe.6G139900_v2.0.a1
pyrus_communis	pycom03g10660 pycom11g14570
rosa_chinensis	RchiOBHm_Chr5g0047281
rosa_laevigata	RLG00000034486
rosa_multiflora	Rmu_sc0003154.1_g000003 Rmu_sc0003441.1_g000098
rosa_roxburghii	Rroxscaffold_1G00034080
rosa_rugosa	Rorug05G0235400
rosa_samantha	Rh5AG314400 Rh5BG323100 Rh5CG350300 Rh5DG333900
rosa_wichuraiana	Rw5G029390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	156
AccB1I	GGYRCC	2 cut(s)	1178, 1319
AccII	CGCG	1 cut(s)	15
AclWI	GGATC	2 cut(s)	1193, 1442
AcsI	RAATTY	2 cut(s)	924, 1507
AcuI	CTGAAG	1 cut(s)	1131
AfaI	GTAC	3 cut(s)	245, 578, 849
AfiI	CCNNNNNNNGG	3 cut(s)	158, 186, 1012
AgsI	TTSAA	9 cut(s)	272, 324, 605, 657, 988, 1001, 1190, 1347, 1412
AjnI	CCWGG	1 cut(s)	1330
Alw26I	GTCTC	4 cut(s)	434, 767, 850, 954
AlwI	GGATC	2 cut(s)	1193, 1442
AlwNI	CAGNNNCTG	1 cut(s)	1202
AoxI	GGCC	4 cut(s)	341, 674, 895, 945
ApeKI	GCWGC	6 cut(s)	230, 233, 497, 563, 566, 830
ApoI	RAATTY	2 cut(s)	924, 1507
AseI	ATTAAT	1 cut(s)	1314
AspA2I	CCTAGG	2 cut(s)	424, 757
AspLEI	GCGC	4 cut(s)	17, 51, 383, 716
AspS9I	GGNCC	6 cut(s)	341, 401, 674, 734, 1243, 1262
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	4 cut(s)	401, 734, 1243, 1262
AvrII	CCTAGG	2 cut(s)	424, 757
BanI	GGYRCC	2 cut(s)	1178, 1319
BbsI	GAAGAC	1 cut(s)	1122
BbvI	GCAGC	6 cut(s)	220, 242, 484, 553, 575, 817
BccI	CCATC	6 cut(s)	467, 800, 974, 1234, 1252, 1520
BceAI	ACGGC	3 cut(s)	216, 549, 1192
BciT130I	CCWGG	1 cut(s)	1332
BciVI	GTATCC	2 cut(s)	1349, 1387
BclI	TGATCA	2 cut(s)	456, 789
BcoDI	GTCTC	4 cut(s)	434, 767, 850, 954
BfaI	CTAG	8 cut(s)	315, 425, 482, 509, 648, 758, 815, 842
BfoI	RGCGCY	3 cut(s)	52, 384, 717
BfuAI	ACCTGC	1 cut(s)	156
BfuI	GTATCC	2 cut(s)	1349, 1387
BglII	AGATCT	2 cut(s)	484, 817
BlnI	CCTAGG	2 cut(s)	424, 757
Bme1390I	CCNGG	1 cut(s)	1332
Bme18I	GGWCC	4 cut(s)	401, 734, 1243, 1262
BmgT120I	GGNCC	6 cut(s)	341, 401, 674, 734, 1243, 1262
BmiI	GGNNCC	3 cut(s)	1180, 1263, 1321
BmrFI	CCNGG	1 cut(s)	1332
BmsI	GCATC	2 cut(s)	320, 653
BpiI	GAAGAC	1 cut(s)	1122
BpuEI	CTTGAG	2 cut(s)	56, 962
BsaI	GGTCTC	2 cut(s)	434, 767
BsaJI	CCNNGG	4 cut(s)	156, 424, 757, 1174
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 186, 1012
Bse1I	ACTGG	2 cut(s)	284, 617
BseBI	CCWGG	1 cut(s)	1332
BseDI	CCNNGG	4 cut(s)	156, 424, 757, 1174
BseGI	GGATG	1 cut(s)	1245
BseLI	CCNNNNNNNGG	3 cut(s)	158, 186, 1012
BseMII	CTCAG	5 cut(s)	231, 564, 1084, 1475, 1512
BseNI	ACTGG	2 cut(s)	284, 617
BseRI	GAGGAG	4 cut(s)	55, 1031, 1310, 1322
BseXI	GCAGC	6 cut(s)	220, 242, 484, 553, 575, 817
BseYI	CCCAGC	4 cut(s)	45, 338, 671, 1369
Bsh1236I	CGCG	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	343, 676, 897, 947
BshNI	GGYRCC	2 cut(s)	1178, 1319
BsiEI	CGRYCG	1 cut(s)	121
BslFI	GGGAC	3 cut(s)	951, 1178, 1434
BslI	CCNNNNNNNGG	3 cut(s)	158, 186, 1012
BsmAI	GTCTC	4 cut(s)	434, 767, 850, 954
BsmBI	CGTCTC	2 cut(s)	850, 954
BsmFI	GGGAC	3 cut(s)	951, 1178, 1434
BsnI	GGCC	4 cut(s)	343, 676, 897, 947
Bso31I	GGTCTC	2 cut(s)	434, 767
Bsp143I	GATC	8 cut(s)	142, 456, 484, 789, 817, 1198, 1429, 1447
BspANI	GGCC	4 cut(s)	343, 676, 897, 947
BspCNI	CTCAG	5 cut(s)	232, 565, 1083, 1474, 1511
BspFNI	CGCG	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	1470
BspLI	GGNNCC	3 cut(s)	1180, 1263, 1321
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	1193, 1442
BspT107I	GGYRCC	2 cut(s)	1178, 1319
BspTNI	GGTCTC	2 cut(s)	434, 767
BsrI	ACTGG	2 cut(s)	284, 617
BssECI	CCNNGG	4 cut(s)	156, 424, 757, 1174
BssMI	GATC	8 cut(s)	142, 456, 484, 789, 817, 1198, 1429, 1447
BssT1I	CCWWGG	2 cut(s)	424, 757
Bst2UI	CCWGG	1 cut(s)	1332
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	3 cut(s)	185, 518, 1071
BstC8I	GCNNGC	3 cut(s)	53, 128, 153
BstDEI	CTNAG	5 cut(s)	240, 573, 1070, 1461, 1498
BstDSI	CCRYGG	1 cut(s)	1174
BstEII	GGTNACC	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	1245
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	3 cut(s)	52, 384, 717
BstHHI	GCGC	4 cut(s)	17, 51, 383, 716
BstKTI	GATC	8 cut(s)	145, 459, 487, 792, 820, 1201, 1432, 1450
BstMAI	GTCTC	4 cut(s)	434, 767, 850, 954
BstMBI	GATC	8 cut(s)	142, 456, 484, 789, 817, 1198, 1429, 1447
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	6 cut(s)	308, 325, 641, 658, 1134, 1166
BstNI	CCWGG	1 cut(s)	1332
BstNSI	RCATGY	3 cut(s)	467, 800, 1409
BstPI	GGTNACC	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	1330
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	6 cut(s)	220, 242, 484, 553, 575, 817
BstV2I	GAAGAC	1 cut(s)	1122
BstX2I	RGATCY	3 cut(s)	484, 817, 1198
BstYI	RGATCY	3 cut(s)	484, 817, 1198
BsuI	GTATCC	2 cut(s)	1349, 1387
BsuRI	GGCC	4 cut(s)	343, 676, 897, 947
BtgI	CCRYGG	1 cut(s)	1174
BtsCI	GGATG	1 cut(s)	1245
BtsI	GCAGTG	1 cut(s)	1452
BtsIMutI	CAGTG	6 cut(s)	246, 579, 935, 1078, 1107, 1452
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	53, 128, 153
CaiI	CAGNNNCTG	1 cut(s)	1202
CciI	TCATGA	1 cut(s)	1470
CfoI	GCGC	4 cut(s)	17, 51, 383, 716
Cfr13I	GGNCC	6 cut(s)	341, 401, 674, 734, 1243, 1262
CseI	GACGC	1 cut(s)	971
Csp6I	GTAC	3 cut(s)	244, 577, 848
CviAII	CATG	5 cut(s)	464, 797, 1255, 1406, 1471
CviQI	GTAC	3 cut(s)	244, 577, 848
DdeI	CTNAG	5 cut(s)	240, 573, 1070, 1461, 1498
DpnI	GATC	8 cut(s)	144, 458, 486, 791, 819, 1200, 1431, 1449
DpnII	GATC	8 cut(s)	142, 456, 484, 789, 817, 1198, 1429, 1447
Eam1104I	CTCTTC	3 cut(s)	185, 518, 1071
EarI	CTCTTC	3 cut(s)	185, 518, 1071
Eco130I	CCWWGG	2 cut(s)	424, 757
Eco31I	GGTCTC	2 cut(s)	434, 767
Eco47I	GGWCC	4 cut(s)	401, 734, 1243, 1262
Eco57I	CTGAAG	1 cut(s)	1131
Eco91I	GGTNACC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	924
EcoRII	CCWGG	1 cut(s)	1330
EcoT14I	CCWWGG	2 cut(s)	424, 757
ErhI	CCWWGG	2 cut(s)	424, 757
Esp3I	CGTCTC	2 cut(s)	850, 954
FaeI	CATG	5 cut(s)	467, 800, 1258, 1409, 1474
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 1327, 1359
FaqI	GGGAC	3 cut(s)	951, 1178, 1434
FatI	CATG	5 cut(s)	463, 796, 1254, 1405, 1470
FauI	CCCGC	3 cut(s)	36, 135, 160
FbaI	TGATCA	2 cut(s)	456, 789
FokI	GGATG	1 cut(s)	1252
FspBI	CTAG	8 cut(s)	315, 425, 482, 509, 648, 758, 815, 842
GlaI	GCGC	4 cut(s)	16, 50, 382, 715
GsaI	CCCAGC	4 cut(s)	49, 342, 675, 1373
HaeII	RGCGCY	3 cut(s)	52, 384, 717
HaeIII	GGCC	4 cut(s)	343, 676, 897, 947
HgaI	GACGC	1 cut(s)	971
HhaI	GCGC	4 cut(s)	17, 51, 383, 716
Hin1II	CATG	5 cut(s)	467, 800, 1258, 1409, 1474
Hin6I	GCGC	4 cut(s)	15, 49, 381, 714
HinP1I	GCGC	4 cut(s)	15, 49, 381, 714
HincII	GTYRAC	1 cut(s)	1216
HindII	GTYRAC	1 cut(s)	1216
HinfI	GANTC	2 cut(s)	349, 682
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	4 cut(s)	246, 579, 1216, 1276
Hpy188I	TCNGA	5 cut(s)	21, 456, 789, 1143, 1501
Hpy8I	GTNNAC	4 cut(s)	246, 579, 1216, 1276
HpyAV	CCTTC	9 cut(s)	70, 91, 118, 384, 717, 881, 928, 982, 1353
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	363, 696
HpyCH4V	TGCA	2 cut(s)	1051, 1417
HpyF10VI	GCNNNNNNNGC	6 cut(s)	308, 325, 641, 658, 1134, 1166
HpyF3I	CTNAG	5 cut(s)	240, 573, 1070, 1461, 1498
HpySE526I	ACGT	2 cut(s)	363, 696
Hsp92II	CATG	5 cut(s)	467, 800, 1258, 1409, 1474
HspAI	GCGC	4 cut(s)	15, 49, 381, 714
Ksp22I	TGATCA	2 cut(s)	456, 789
Kzo9I	GATC	8 cut(s)	142, 456, 484, 789, 817, 1198, 1429, 1447
LmnI	GCTCC	9 cut(s)	22, 60, 118, 241, 425, 574, 758, 1174, 1378
Lsp1109I	GCAGC	6 cut(s)	220, 242, 484, 553, 575, 817
LweI	GCATC	2 cut(s)	320, 653
MaeI	CTAG	8 cut(s)	315, 425, 482, 509, 648, 758, 815, 842
MaeII	ACGT	2 cut(s)	363, 696
MaeIII	GTNAC	2 cut(s)	8, 1105
MalI	GATC	8 cut(s)	144, 458, 486, 791, 819, 1200, 1431, 1449
MboI	GATC	8 cut(s)	142, 456, 484, 789, 817, 1198, 1429, 1447
MfeI	CAATTG	1 cut(s)	1380
MflI	RGATCY	3 cut(s)	484, 817, 1198
MluCI	AATT	5 cut(s)	891, 924, 1289, 1380, 1507
MlyI	GAGTC	2 cut(s)	343, 676
MmeI	TCCRAC	3 cut(s)	384, 717, 1400
MseI	TTAA	7 cut(s)	258, 434, 591, 767, 1154, 1164, 1314
MspA1I	CMGCKG	3 cut(s)	233, 566, 1445
MspR9I	CCNGG	1 cut(s)	1332
MunI	CAATTG	1 cut(s)	1380
MvaI	CCWGG	1 cut(s)	1332
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	6 cut(s)	308, 325, 641, 658, 1134, 1166
NdeII	GATC	8 cut(s)	142, 456, 484, 789, 817, 1198, 1429, 1447
NlaIII	CATG	5 cut(s)	467, 800, 1258, 1409, 1474
NlaIV	GGNNCC	3 cut(s)	1180, 1263, 1321
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	1105
NspI	RCATGY	3 cut(s)	467, 800, 1409
PagI	TCATGA	1 cut(s)	1470
PaqCI	CACCTGC	1 cut(s)	156
PleI	GAGTC	2 cut(s)	343, 676
PpsI	GAGTC	2 cut(s)	343, 676
PshBI	ATTAAT	1 cut(s)	1314
Psp6I	CCWGG	1 cut(s)	1330
PspEI	GGTNACC	1 cut(s)	8
PspFI	CCCAGC	4 cut(s)	45, 338, 671, 1369
PspGI	CCWGG	1 cut(s)	1330
PspN4I	GGNNCC	3 cut(s)	1180, 1263, 1321
PspPI	GGNCC	6 cut(s)	341, 401, 674, 734, 1243, 1262
PstNI	CAGNNNCTG	1 cut(s)	1202
PsuI	RGATCY	3 cut(s)	484, 817, 1198
PvuII	CAGCTG	2 cut(s)	233, 566
RsaI	GTAC	3 cut(s)	245, 578, 849
RsaNI	GTAC	3 cut(s)	244, 577, 848
SaqAI	TTAA	7 cut(s)	258, 434, 591, 767, 1154, 1164, 1314
Sau3AI	GATC	8 cut(s)	142, 456, 484, 789, 817, 1198, 1429, 1447
Sau96I	GGNCC	6 cut(s)	341, 401, 674, 734, 1243, 1262
SchI	GAGTC	2 cut(s)	343, 676
ScrFI	CCNGG	1 cut(s)	1332
SfaNI	GCATC	2 cut(s)	320, 653
SinI	GGWCC	4 cut(s)	401, 734, 1243, 1262
SmlI	CTYRAG	2 cut(s)	71, 941
SmoI	CTYRAG	2 cut(s)	71, 941
Sse9I	AATT	5 cut(s)	891, 924, 1289, 1380, 1507
SspMI	CTAG	8 cut(s)	315, 425, 482, 509, 648, 758, 815, 842
StyD4I	CCNGG	1 cut(s)	1330
StyI	CCWWGG	2 cut(s)	424, 757
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	2 cut(s)	366, 699
TaqI	TCGA	3 cut(s)	96, 885, 1305
TasI	AATT	5 cut(s)	891, 924, 1289, 1380, 1507
TatI	WGTACW	2 cut(s)	243, 576
TauI	GCSGC	6 cut(s)	79, 126, 133, 136, 346, 679
Tru1I	TTAA	7 cut(s)	258, 434, 591, 767, 1154, 1164, 1314
Tru9I	TTAA	7 cut(s)	258, 434, 591, 767, 1154, 1164, 1314
TscAI	CASTG	6 cut(s)	253, 586, 935, 1078, 1114, 1459
TseFI	GTSAC	1 cut(s)	1105
TseI	GCWGC	6 cut(s)	230, 233, 497, 563, 566, 830
Tsp45I	GTSAC	1 cut(s)	1105
TspDTI	ATGAA	4 cut(s)	984, 1161, 1459, 1499
TspGWI	ACGGA	2 cut(s)	874, 1028
TspRI	CASTG	6 cut(s)	253, 586, 935, 1078, 1114, 1459
VpaK11BI	GGWCC	4 cut(s)	401, 734, 1243, 1262
VspI	ATTAAT	1 cut(s)	1314
XapI	RAATTY	2 cut(s)	924, 1507
XbaI	TCTAGA	4 cut(s)	481, 508, 814, 841
XceI	RCATGY	3 cut(s)	467, 800, 1409
XmaJI	CCTAGG	2 cut(s)	424, 757
XspI	CTAG	8 cut(s)	315, 425, 482, 509, 648, 758, 815, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.