transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22220 AT5G22220 |
| fragaria_vesca | FvH4_3g25990 FvH4_3g25990 FvH4_3g25990 FvH4_3g25990 FvH4_3g25990 |
| malus_domestica | MD03G1152700.v1.1 MD11G1172700.v1.1 |
| prunus_persica | Prupe.6G139900_v2.0.a1 Prupe.6G139900_v2.0.a1 |
| pyrus_communis | pycom03g10660 pycom11g14570 |
| rosa_chinensis | RchiOBHm_Chr5g0047281 |
| rosa_laevigata | RLG00000034486 |
| rosa_multiflora | Rmu_sc0003154.1_g000003 Rmu_sc0003441.1_g000098 |
| rosa_roxburghii | Rroxscaffold_1G00034080 |
| rosa_rugosa | Rorug05G0235400 |
| rosa_samantha | Rh5AG314400 Rh5BG323100 Rh5CG350300 Rh5DG333900 |
| rosa_wichuraiana | Rw5G029390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 794 |
| AccII | CGCG | 1 cut(s) | 1261 |
| AciI | CCGC | 9 cut(s) | 14, 17, 44, 91, 136, 293, 330, 416, 1259 |
| AclWI | GGATC | 4 cut(s) | 441, 809, 1058, 1103 |
| AcsI | RAATTY | 3 cut(s) | 200, 392, 540 |
| AcuI | CTGAAG | 3 cut(s) | 951, 960, 1251 |
| AcyI | GRCGYC | 1 cut(s) | 299 |
| AdeI | CACNNNGTG | 1 cut(s) | 1262 |
| AfaI | GTAC | 2 cut(s) | 465, 1296 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 107, 135, 329, 628 |
| AgsI | TTSAA | 9 cut(s) | 200, 221, 273, 503, 604, 617, 806, 1028, 1205 |
| AluBI | AGCT | 9 cut(s) | 56, 185, 277, 369, 446, 529, 785, 989, 1022 |
| AluI | AGCT | 9 cut(s) | 56, 185, 277, 369, 446, 529, 785, 989, 1022 |
| Alw21I | GWGCWC | 2 cut(s) | 195, 1225 |
| Alw26I | GTCTC | 3 cut(s) | 383, 466, 570 |
| Alw44I | GTGCAC | 1 cut(s) | 1221 |
| AlwI | GGATC | 4 cut(s) | 441, 809, 1058, 1103 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 188, 818, 1196 |
| Ama87I | CYCGRG | 1 cut(s) | 104 |
| AoxI | GGCC | 2 cut(s) | 511, 561 |
| ApaLI | GTGCAC | 1 cut(s) | 1221 |
| ApeKI | GCWGC | 3 cut(s) | 182, 446, 935 |
| ApoI | RAATTY | 3 cut(s) | 200, 392, 540 |
| AseI | ATTAAT | 1 cut(s) | 930 |
| AspS9I | GGNCC | 4 cut(s) | 290, 350, 859, 878 |
| AsuHPI | GGTGA | 1 cut(s) | 715 |
| AvaI | CYCGRG | 1 cut(s) | 104 |
| AvaII | GGWCC | 4 cut(s) | 290, 350, 859, 878 |
| AxyI | CCTNAGG | 1 cut(s) | 1077 |
| BaeGI | GKGCMC | 2 cut(s) | 1225, 1267 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1278, 1311 |
| BanI | GGYRCC | 1 cut(s) | 794 |
| BauI | CACGAG | 1 cut(s) | 565 |
| BbsI | GAAGAC | 1 cut(s) | 738 |
| Bbv12I | GWGCWC | 2 cut(s) | 195, 1225 |
| BbvI | GCAGC | 3 cut(s) | 194, 433, 922 |
| BccI | CCATC | 5 cut(s) | 416, 590, 850, 868, 1285 |
| BceAI | ACGGC | 1 cut(s) | 31 |
| BclI | TGATCA | 1 cut(s) | 405 |
| BcoDI | GTCTC | 3 cut(s) | 383, 466, 570 |
| BfaI | CTAG | 3 cut(s) | 264, 948, 1317 |
| BfmI | CTRYAG | 1 cut(s) | 1302 |
| BisI | GCNGC | 5 cut(s) | 17, 44, 183, 447, 936 |
| BlsI | GCNGC | 5 cut(s) | 18, 45, 184, 448, 937 |
| Bme18I | GGWCC | 4 cut(s) | 290, 350, 859, 878 |
| BmeT110I | CYCGRG | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 4 cut(s) | 290, 350, 859, 878 |
| BmiI | GGNNCC | 2 cut(s) | 796, 879 |
| BmsI | GCATC | 5 cut(s) | 136, 269, 1120, 1147, 1179 |
| BpiI | GAAGAC | 1 cut(s) | 738 |
| BpmI | CTGGAG | 2 cut(s) | 216, 1218 |
| BpuEI | CTTGAG | 1 cut(s) | 578 |
| BsaHI | GRCGYC | 1 cut(s) | 299 |
| BsaI | GGTCTC | 1 cut(s) | 383 |
| BsaJI | CCNNGG | 3 cut(s) | 105, 790, 1242 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 64, 94, 214, 244 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 107, 135, 329, 628 |
| Bse1I | ACTGG | 3 cut(s) | 233, 1145, 1201 |
| Bse21I | CCTNAGG | 1 cut(s) | 1077 |
| BseDI | CCNNGG | 3 cut(s) | 105, 790, 1242 |
| BseGI | GGATG | 3 cut(s) | 861, 1159, 1216 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 107, 135, 329, 628 |
| BseMII | CTCAG | 7 cut(s) | 66, 180, 594, 700, 996, 1091, 1128 |
| BseNI | ACTGG | 3 cut(s) | 233, 1145, 1201 |
| BseRI | GAGGAG | 4 cut(s) | 926, 938, 1022, 1065 |
| BseSI | GKGCMC | 2 cut(s) | 1225, 1267 |
| BseXI | GCAGC | 3 cut(s) | 194, 433, 922 |
| BseYI | CCCAGC | 1 cut(s) | 985 |
| Bsh1236I | CGCG | 1 cut(s) | 1261 |
| BshFI | GGCC | 2 cut(s) | 513, 563 |
| BshNI | GGYRCC | 1 cut(s) | 794 |
| BsiHKAI | GWGCWC | 2 cut(s) | 195, 1225 |
| BsiHKCI | CYCGRG | 1 cut(s) | 104 |
| BslFI | GGGAC | 3 cut(s) | 567, 794, 1050 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 107, 135, 329, 628 |
| BsmAI | GTCTC | 3 cut(s) | 383, 466, 570 |
| BsmBI | CGTCTC | 1 cut(s) | 466 |
| BsmFI | GGGAC | 3 cut(s) | 567, 794, 1050 |
| BsnI | GGCC | 2 cut(s) | 513, 563 |
| Bso31I | GGTCTC | 1 cut(s) | 383 |
| BsoBI | CYCGRG | 1 cut(s) | 104 |
| Bsp1286I | GDGCHC | 3 cut(s) | 195, 1225, 1267 |
| Bsp143I | GATC | 5 cut(s) | 405, 433, 814, 1063, 1095 |
| Bsp19I | CCATGG | 2 cut(s) | 790, 1242 |
| BspACI | CCGC | 9 cut(s) | 14, 17, 44, 91, 136, 293, 330, 416, 1259 |
| BspANI | GGCC | 2 cut(s) | 513, 563 |
| BspCNI | CTCAG | 7 cut(s) | 65, 181, 593, 699, 997, 1090, 1127 |
| BspFNI | CGCG | 1 cut(s) | 1261 |
| BspHI | TCATGA | 2 cut(s) | 1086, 1098 |
| BspLI | GGNNCC | 2 cut(s) | 796, 879 |
| BspPI | GGATC | 4 cut(s) | 441, 809, 1058, 1103 |
| BspQI | GCTCTTC | 1 cut(s) | 936 |
| BspT107I | GGYRCC | 1 cut(s) | 794 |
| BspTNI | GGTCTC | 1 cut(s) | 383 |
| BsrI | ACTGG | 3 cut(s) | 233, 1145, 1201 |
| BssECI | CCNNGG | 3 cut(s) | 105, 790, 1242 |
| BssMI | GATC | 5 cut(s) | 405, 433, 814, 1063, 1095 |
| BssNI | GRCGYC | 1 cut(s) | 299 |
| BssSI | CACGAG | 1 cut(s) | 565 |
| BssT1I | CCWWGG | 2 cut(s) | 790, 1242 |
| Bst2BI | CACGAG | 1 cut(s) | 565 |
| Bst4CI | ACNGT | 3 cut(s) | 27, 118, 1165 |
| Bst6I | CTCTTC | 4 cut(s) | 134, 222, 687, 936 |
| BstACI | GRCGYC | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 2 cut(s) | 303, 1263 |
| BstDEI | CTNAG | 7 cut(s) | 52, 189, 580, 686, 1005, 1077, 1114 |
| BstDSI | CCRYGG | 2 cut(s) | 790, 1242 |
| BstEII | GGTNACC | 1 cut(s) | 8 |
| BstF5I | GGATG | 3 cut(s) | 861, 1159, 1216 |
| BstFNI | CGCG | 1 cut(s) | 1261 |
| BstKTI | GATC | 5 cut(s) | 408, 436, 817, 1066, 1098 |
| BstMAI | GTCTC | 3 cut(s) | 383, 466, 570 |
| BstMBI | GATC | 5 cut(s) | 405, 433, 814, 1063, 1095 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 257, 266, 750, 782 |
| BstNSI | RCATGY | 1 cut(s) | 416 |
| BstPI | GGTNACC | 1 cut(s) | 8 |
| BstSFI | CTRYAG | 1 cut(s) | 1302 |
| BstSLI | GKGCMC | 2 cut(s) | 1225, 1267 |
| BstUI | CGCG | 1 cut(s) | 1261 |
| BstV1I | GCAGC | 3 cut(s) | 194, 433, 922 |
| BstV2I | GAAGAC | 1 cut(s) | 738 |
| BstX2I | RGATCY | 2 cut(s) | 433, 814 |
| BstYI | RGATCY | 2 cut(s) | 433, 814 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1077 |
| BsuRI | GGCC | 2 cut(s) | 513, 563 |
| BtgI | CCRYGG | 2 cut(s) | 790, 1242 |
| BtsCI | GGATG | 3 cut(s) | 861, 1159, 1216 |
| BtsI | GCAGTG | 1 cut(s) | 1068 |
| BtsIMutI | CAGTG | 4 cut(s) | 551, 694, 1002, 1068 |
| Cac8I | GCNNGC | 2 cut(s) | 303, 1263 |
| CaiI | CAGNNNCTG | 3 cut(s) | 188, 818, 1196 |
| CciI | TCATGA | 2 cut(s) | 1086, 1098 |
| Cfr13I | GGNCC | 4 cut(s) | 290, 350, 859, 878 |
| CseI | GACGC | 1 cut(s) | 307 |
| Csp6I | GTAC | 2 cut(s) | 464, 1295 |
| CviAII | CATG | 6 cut(s) | 413, 791, 871, 1087, 1099, 1243 |
| CviQI | GTAC | 2 cut(s) | 464, 1295 |
| DdeI | CTNAG | 7 cut(s) | 52, 189, 580, 686, 1005, 1077, 1114 |
| DpnI | GATC | 5 cut(s) | 407, 435, 816, 1065, 1097 |
| DpnII | GATC | 5 cut(s) | 405, 433, 814, 1063, 1095 |
| DraIII | CACNNNGTG | 1 cut(s) | 1262 |
| Eam1104I | CTCTTC | 4 cut(s) | 134, 222, 687, 936 |
| EarI | CTCTTC | 4 cut(s) | 134, 222, 687, 936 |
| EciI | GGCGGA | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 2 cut(s) | 790, 1242 |
| Eco31I | GGTCTC | 1 cut(s) | 383 |
| Eco47I | GGWCC | 4 cut(s) | 290, 350, 859, 878 |
| Eco57I | CTGAAG | 3 cut(s) | 951, 960, 1251 |
| Eco81I | CCTNAGG | 1 cut(s) | 1077 |
| Eco88I | CYCGRG | 1 cut(s) | 104 |
| Eco91I | GGTNACC | 1 cut(s) | 8 |
| EcoO65I | GGTNACC | 1 cut(s) | 8 |
| EcoRI | GAATTC | 1 cut(s) | 540 |
| EcoT14I | CCWWGG | 2 cut(s) | 790, 1242 |
| ErhI | CCWWGG | 2 cut(s) | 790, 1242 |
| Esp3I | CGTCTC | 1 cut(s) | 466 |
| FaeI | CATG | 6 cut(s) | 416, 794, 874, 1090, 1102, 1246 |
| FaqI | GGGAC | 3 cut(s) | 567, 794, 1050 |
| FatI | CATG | 6 cut(s) | 412, 790, 870, 1086, 1098, 1242 |
| FauI | CCCGC | 1 cut(s) | 21 |
| FauNDI | CATATG | 1 cut(s) | 1181 |
| FbaI | TGATCA | 1 cut(s) | 405 |
| Fnu4HI | GCNGC | 5 cut(s) | 17, 44, 183, 447, 936 |
| FokI | GGATG | 3 cut(s) | 868, 1166, 1223 |
| Fsp4HI | GCNGC | 5 cut(s) | 17, 44, 183, 447, 936 |
| FspBI | CTAG | 3 cut(s) | 264, 948, 1317 |
| GluI | GCNGC | 5 cut(s) | 17, 44, 183, 447, 936 |
| GsaI | CCCAGC | 1 cut(s) | 989 |
| GsuI | CTGGAG | 2 cut(s) | 216, 1218 |
| HaeIII | GGCC | 2 cut(s) | 513, 563 |
| HgaI | GACGC | 1 cut(s) | 307 |
| Hin1I | GRCGYC | 1 cut(s) | 299 |
| Hin1II | CATG | 6 cut(s) | 416, 794, 874, 1090, 1102, 1246 |
| HincII | GTYRAC | 2 cut(s) | 832, 963 |
| HindII | GTYRAC | 2 cut(s) | 832, 963 |
| HinfI | GANTC | 1 cut(s) | 578 |
| HphI | GGTGA | 1 cut(s) | 715 |
| Hpy166II | GTNNAC | 5 cut(s) | 30, 832, 892, 963, 1223 |
| Hpy188I | TCNGA | 6 cut(s) | 190, 405, 583, 759, 1117, 1153 |
| Hpy8I | GTNNAC | 5 cut(s) | 30, 832, 892, 963, 1223 |
| HpyAV | CCTTC | 7 cut(s) | 85, 333, 497, 544, 598, 629, 1308 |
| HpyCH4III | ACNGT | 3 cut(s) | 27, 118, 1165 |
| HpyCH4IV | ACGT | 1 cut(s) | 312 |
| HpyCH4V | TGCA | 5 cut(s) | 149, 667, 1133, 1223, 1286 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 257, 266, 750, 782 |
| HpyF3I | CTNAG | 7 cut(s) | 52, 189, 580, 686, 1005, 1077, 1114 |
| HpySE526I | ACGT | 1 cut(s) | 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 299 |
| Hsp92II | CATG | 6 cut(s) | 416, 794, 874, 1090, 1102, 1246 |
| Ksp22I | TGATCA | 1 cut(s) | 405 |
| Kzo9I | GATC | 5 cut(s) | 405, 433, 814, 1063, 1095 |
| LguI | GCTCTTC | 1 cut(s) | 936 |
| LmnI | GCTCC | 5 cut(s) | 85, 235, 790, 994, 1078 |
| Lsp1109I | GCAGC | 3 cut(s) | 194, 433, 922 |
| LweI | GCATC | 5 cut(s) | 136, 269, 1120, 1147, 1179 |
| MaeI | CTAG | 3 cut(s) | 264, 948, 1317 |
| MaeII | ACGT | 1 cut(s) | 312 |
| MaeIII | GTNAC | 4 cut(s) | 8, 721, 1000, 1252 |
| MalI | GATC | 5 cut(s) | 407, 435, 816, 1065, 1097 |
| MboI | GATC | 5 cut(s) | 405, 433, 814, 1063, 1095 |
| MflI | RGATCY | 2 cut(s) | 433, 814 |
| MhlI | GDGCHC | 3 cut(s) | 195, 1225, 1267 |
| MluCI | AATT | 7 cut(s) | 200, 392, 507, 540, 674, 777, 905 |
| MlyI | GAGTC | 1 cut(s) | 572 |
| MmeI | TCCRAC | 1 cut(s) | 333 |
| MseI | TTAA | 9 cut(s) | 39, 207, 383, 770, 780, 930, 974, 1122, 1324 |
| MvnI | CGCG | 1 cut(s) | 1261 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 257, 266, 750, 782 |
| NcoI | CCATGG | 2 cut(s) | 790, 1242 |
| NdeI | CATATG | 1 cut(s) | 1181 |
| NdeII | GATC | 5 cut(s) | 405, 433, 814, 1063, 1095 |
| NlaIII | CATG | 6 cut(s) | 416, 794, 874, 1090, 1102, 1246 |
| NlaIV | GGNNCC | 2 cut(s) | 796, 879 |
| NmuCI | GTSAC | 3 cut(s) | 721, 1000, 1252 |
| NspI | RCATGY | 1 cut(s) | 416 |
| PagI | TCATGA | 2 cut(s) | 1086, 1098 |
| PciSI | GCTCTTC | 1 cut(s) | 936 |
| PkrI | GCNGC | 5 cut(s) | 18, 45, 184, 448, 937 |
| PleI | GAGTC | 1 cut(s) | 572 |
| PpsI | GAGTC | 1 cut(s) | 572 |
| PshBI | ATTAAT | 1 cut(s) | 930 |
| PspEI | GGTNACC | 1 cut(s) | 8 |
| PspFI | CCCAGC | 1 cut(s) | 985 |
| PspN4I | GGNNCC | 2 cut(s) | 796, 879 |
| PspPI | GGNCC | 4 cut(s) | 290, 350, 859, 878 |
| PstNI | CAGNNNCTG | 3 cut(s) | 188, 818, 1196 |
| PsuI | RGATCY | 2 cut(s) | 433, 814 |
| RsaI | GTAC | 2 cut(s) | 465, 1296 |
| RsaNI | GTAC | 2 cut(s) | 464, 1295 |
| SapI | GCTCTTC | 1 cut(s) | 936 |
| SaqAI | TTAA | 9 cut(s) | 39, 207, 383, 770, 780, 930, 974, 1122, 1324 |
| SatI | GCNGC | 5 cut(s) | 17, 44, 183, 447, 936 |
| Sau3AI | GATC | 5 cut(s) | 405, 433, 814, 1063, 1095 |
| Sau96I | GGNCC | 4 cut(s) | 290, 350, 859, 878 |
| SchI | GAGTC | 1 cut(s) | 572 |
| SduI | GDGCHC | 3 cut(s) | 195, 1225, 1267 |
| SfaNI | GCATC | 5 cut(s) | 136, 269, 1120, 1147, 1179 |
| SfcI | CTRYAG | 1 cut(s) | 1302 |
| SinI | GGWCC | 4 cut(s) | 290, 350, 859, 878 |
| SmlI | CTYRAG | 1 cut(s) | 557 |
| SmoI | CTYRAG | 1 cut(s) | 557 |
| Sse9I | AATT | 7 cut(s) | 200, 392, 507, 540, 674, 777, 905 |
| SsiI | CCGC | 9 cut(s) | 14, 17, 44, 91, 136, 293, 330, 416, 1259 |
| SspMI | CTAG | 3 cut(s) | 264, 948, 1317 |
| StyI | CCWWGG | 2 cut(s) | 790, 1242 |
| TaaI | ACNGT | 3 cut(s) | 27, 118, 1165 |
| TaiI | ACGT | 1 cut(s) | 315 |
| TaqI | TCGA | 3 cut(s) | 63, 921, 1280 |
| TasI | AATT | 7 cut(s) | 200, 392, 507, 540, 674, 777, 905 |
| TauI | GCSGC | 2 cut(s) | 19, 46 |
| Tru1I | TTAA | 9 cut(s) | 39, 207, 383, 770, 780, 930, 974, 1122, 1324 |
| Tru9I | TTAA | 9 cut(s) | 39, 207, 383, 770, 780, 930, 974, 1122, 1324 |
| TscAI | CASTG | 4 cut(s) | 551, 694, 1009, 1075 |
| TseFI | GTSAC | 3 cut(s) | 721, 1000, 1252 |
| TseI | GCWGC | 3 cut(s) | 182, 446, 935 |
| Tsp45I | GTSAC | 3 cut(s) | 721, 1000, 1252 |
| TspDTI | ATGAA | 5 cut(s) | 600, 777, 993, 1075, 1115 |
| TspGWI | ACGGA | 3 cut(s) | 25, 490, 644 |
| TspRI | CASTG | 4 cut(s) | 551, 694, 1009, 1075 |
| VneI | GTGCAC | 1 cut(s) | 1221 |
| VpaK11BI | GGWCC | 4 cut(s) | 290, 350, 859, 878 |
| VspI | ATTAAT | 1 cut(s) | 930 |
| XapI | RAATTY | 3 cut(s) | 200, 392, 540 |
| XceI | RCATGY | 1 cut(s) | 416 |
| XspI | CTAG | 3 cut(s) | 264, 948, 1317 |