FvH4_3g25990

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
18799177 .. 18804187
5011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25990.t3

Sequence Viewer

Length: 1326 bp
ATGTCGGGTTACCCGCCGCCTCCACCGTTTACCTCCGTTAAGCCGCCGTTCTCAGCTTCACTCGATTATCACACCTTCGCTCCCGATGTCCGCCAACAACCCCCCGAGGGCATTACCGTCAAGCCCTCCCTAAAGCGGAAGAGTGATGCAGTAGTTTATGATGAGCCTACTGATAGGACAGCAGCTTCTGAGCACATTGAATTTGTTAATAGCCCTCTTCAAACTCCTGCTCCAGTCAAGGTGGGAAAGGCAACCAAAGCATCTAGGGCTTCAAAGCTCAATAAATCTGGACCGCAGACGCCTGCTTCCAACGTGGGTTCTCCTTCTGGCGGTAATCTTACTCCTGCTGGTCCTTGTCGTTATGACAGCTCATTAGGTCTCTTAACGAAGAAATTTATCAATCTGATCAAACATGCGGAAGATGGTATTCTGGATCTCAATAAAGCTGCTGATACTTTAGAGGTACAAAAGAGACGGATATACGATATAACAAATGTTCTTGAAGGAATTGGCCTCATAGAAAAGAAGCTGAAAAACAGAATTCAGTGGAAGGGACTTGAGGCCACGAGGACAGGAGACTCAGATGAAAACTATGATGGTTTGAAGGCACAAGTTGAAAACCTATCTACGGAGGAAGGCAGATTAGATGAGCAAATAAGAGAAATGCAGGAAAAATTGAGCAATCTCAGTGAAGAGGAAAGCAATAAGAAATGGCTTTTTGTCACCGAAGAAGACATCAAGGGCTTACCCTGCTTTCAGAATGAAACCTTAATAGCAATTAAAGCTCCCCATGGCACCACTCTTGAAGTCCCAGATCCTGATGAGGCTGTTGACTATCCCCAAAGGAGATACAGGATGGTCCTGCGAAGCATGATGGGTCCAATAGATGTTTACCTTGTCAGTCAATTTGAGGAGAAGTTCGAGGAGATTAATGCTGCTGAAGAGCCTAGAAATATCCCGTCAACTTCAGGATTAAATGAAAACCCAGCTCCAATAATGGTCACTGAGGAGAGGGGGAAAGCTGTTGAAATACAGGGACAAGAAGATTATAGAGTTTCGGCTGATCCCACTGCTCCTCAGGACTTCATGAGTGGGATCATGAAGATTGTTCCCTCAGATGTTAATAGTGATGCAGATTACTGGCTTTTATCGGATGATGCTACTGTTAGCATCACAGACATATGGAGAACAGAAACTGGAGTTGAATGGGATGAGTTTGGTGCACTTACTGAAGATTATACCATGGGTAATGTCACACCGCGTGCCCAAACCCTGCCATCGAGTGCAACAGAAGTACCTTCTACAGCCAATCCTACTAGGAGTTAA

Protein Analysis

442

Amino Acids

48.72

Weight (kDa)

4.76

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 84 - 147 1.8e-27 E2F/DP family winged-helix DNA-binding domain
E2F_CC-MB PF16421 163 - 263 1.8e-34 E2F transcription factor CC-MB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 794
AccII CGCG 1 cut(s) 1261
AciI CCGC 9 cut(s) 14, 17, 44, 91, 136, 293, 330, 416, 1259
AclWI GGATC 4 cut(s) 441, 809, 1058, 1103
AcsI RAATTY 3 cut(s) 200, 392, 540
AcuI CTGAAG 3 cut(s) 951, 960, 1251
AcyI GRCGYC 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 1262
AfaI GTAC 2 cut(s) 465, 1296
AfiI CCNNNNNNNGG 4 cut(s) 107, 135, 329, 628
AgsI TTSAA 9 cut(s) 200, 221, 273, 503, 604, 617, 806, 1028, 1205
AluBI AGCT 9 cut(s) 56, 185, 277, 369, 446, 529, 785, 989, 1022
AluI AGCT 9 cut(s) 56, 185, 277, 369, 446, 529, 785, 989, 1022
Alw21I GWGCWC 2 cut(s) 195, 1225
Alw26I GTCTC 3 cut(s) 383, 466, 570
Alw44I GTGCAC 1 cut(s) 1221
AlwI GGATC 4 cut(s) 441, 809, 1058, 1103
AlwNI CAGNNNCTG 3 cut(s) 188, 818, 1196
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 2 cut(s) 511, 561
ApaLI GTGCAC 1 cut(s) 1221
ApeKI GCWGC 3 cut(s) 182, 446, 935
ApoI RAATTY 3 cut(s) 200, 392, 540
AseI ATTAAT 1 cut(s) 930
AspS9I GGNCC 4 cut(s) 290, 350, 859, 878
AsuHPI GGTGA 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 4 cut(s) 290, 350, 859, 878
AxyI CCTNAGG 1 cut(s) 1077
BaeGI GKGCMC 2 cut(s) 1225, 1267
BaeI ACNNNNGTAYC 2 cut(s) 1278, 1311
BanI GGYRCC 1 cut(s) 794
BauI CACGAG 1 cut(s) 565
BbsI GAAGAC 1 cut(s) 738
Bbv12I GWGCWC 2 cut(s) 195, 1225
BbvI GCAGC 3 cut(s) 194, 433, 922
BccI CCATC 5 cut(s) 416, 590, 850, 868, 1285
BceAI ACGGC 1 cut(s) 31
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 3 cut(s) 383, 466, 570
BfaI CTAG 3 cut(s) 264, 948, 1317
BfmI CTRYAG 1 cut(s) 1302
BisI GCNGC 5 cut(s) 17, 44, 183, 447, 936
BlsI GCNGC 5 cut(s) 18, 45, 184, 448, 937
Bme18I GGWCC 4 cut(s) 290, 350, 859, 878
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 4 cut(s) 290, 350, 859, 878
BmiI GGNNCC 2 cut(s) 796, 879
BmsI GCATC 5 cut(s) 136, 269, 1120, 1147, 1179
BpiI GAAGAC 1 cut(s) 738
BpmI CTGGAG 2 cut(s) 216, 1218
BpuEI CTTGAG 1 cut(s) 578
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 105, 790, 1242
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 214, 244
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 135, 329, 628
Bse1I ACTGG 3 cut(s) 233, 1145, 1201
Bse21I CCTNAGG 1 cut(s) 1077
BseDI CCNNGG 3 cut(s) 105, 790, 1242
BseGI GGATG 3 cut(s) 861, 1159, 1216
BseLI CCNNNNNNNGG 4 cut(s) 107, 135, 329, 628
BseMII CTCAG 7 cut(s) 66, 180, 594, 700, 996, 1091, 1128
BseNI ACTGG 3 cut(s) 233, 1145, 1201
BseRI GAGGAG 4 cut(s) 926, 938, 1022, 1065
BseSI GKGCMC 2 cut(s) 1225, 1267
BseXI GCAGC 3 cut(s) 194, 433, 922
BseYI CCCAGC 1 cut(s) 985
Bsh1236I CGCG 1 cut(s) 1261
BshFI GGCC 2 cut(s) 513, 563
BshNI GGYRCC 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 195, 1225
BsiHKCI CYCGRG 1 cut(s) 104
BslFI GGGAC 3 cut(s) 567, 794, 1050
BslI CCNNNNNNNGG 4 cut(s) 107, 135, 329, 628
BsmAI GTCTC 3 cut(s) 383, 466, 570
BsmBI CGTCTC 1 cut(s) 466
BsmFI GGGAC 3 cut(s) 567, 794, 1050
BsnI GGCC 2 cut(s) 513, 563
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 195, 1225, 1267
Bsp143I GATC 5 cut(s) 405, 433, 814, 1063, 1095
Bsp19I CCATGG 2 cut(s) 790, 1242
BspACI CCGC 9 cut(s) 14, 17, 44, 91, 136, 293, 330, 416, 1259
BspANI GGCC 2 cut(s) 513, 563
BspCNI CTCAG 7 cut(s) 65, 181, 593, 699, 997, 1090, 1127
BspFNI CGCG 1 cut(s) 1261
BspHI TCATGA 2 cut(s) 1086, 1098
BspLI GGNNCC 2 cut(s) 796, 879
BspPI GGATC 4 cut(s) 441, 809, 1058, 1103
BspQI GCTCTTC 1 cut(s) 936
BspT107I GGYRCC 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 383
BsrI ACTGG 3 cut(s) 233, 1145, 1201
BssECI CCNNGG 3 cut(s) 105, 790, 1242
BssMI GATC 5 cut(s) 405, 433, 814, 1063, 1095
BssNI GRCGYC 1 cut(s) 299
BssSI CACGAG 1 cut(s) 565
BssT1I CCWWGG 2 cut(s) 790, 1242
Bst2BI CACGAG 1 cut(s) 565
Bst4CI ACNGT 3 cut(s) 27, 118, 1165
Bst6I CTCTTC 4 cut(s) 134, 222, 687, 936
BstACI GRCGYC 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 303, 1263
BstDEI CTNAG 7 cut(s) 52, 189, 580, 686, 1005, 1077, 1114
BstDSI CCRYGG 2 cut(s) 790, 1242
BstEII GGTNACC 1 cut(s) 8
BstF5I GGATG 3 cut(s) 861, 1159, 1216
BstFNI CGCG 1 cut(s) 1261
BstKTI GATC 5 cut(s) 408, 436, 817, 1066, 1098
BstMAI GTCTC 3 cut(s) 383, 466, 570
BstMBI GATC 5 cut(s) 405, 433, 814, 1063, 1095
BstMWI GCNNNNNNNGC 4 cut(s) 257, 266, 750, 782
BstNSI RCATGY 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 1302
BstSLI GKGCMC 2 cut(s) 1225, 1267
BstUI CGCG 1 cut(s) 1261
BstV1I GCAGC 3 cut(s) 194, 433, 922
BstV2I GAAGAC 1 cut(s) 738
BstX2I RGATCY 2 cut(s) 433, 814
BstYI RGATCY 2 cut(s) 433, 814
Bsu36I CCTNAGG 1 cut(s) 1077
BsuRI GGCC 2 cut(s) 513, 563
BtgI CCRYGG 2 cut(s) 790, 1242
BtsCI GGATG 3 cut(s) 861, 1159, 1216
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 4 cut(s) 551, 694, 1002, 1068
Cac8I GCNNGC 2 cut(s) 303, 1263
CaiI CAGNNNCTG 3 cut(s) 188, 818, 1196
CciI TCATGA 2 cut(s) 1086, 1098
Cfr13I GGNCC 4 cut(s) 290, 350, 859, 878
CseI GACGC 1 cut(s) 307
Csp6I GTAC 2 cut(s) 464, 1295
CviAII CATG 6 cut(s) 413, 791, 871, 1087, 1099, 1243
CviQI GTAC 2 cut(s) 464, 1295
DdeI CTNAG 7 cut(s) 52, 189, 580, 686, 1005, 1077, 1114
DpnI GATC 5 cut(s) 407, 435, 816, 1065, 1097
DpnII GATC 5 cut(s) 405, 433, 814, 1063, 1095
DraIII CACNNNGTG 1 cut(s) 1262
Eam1104I CTCTTC 4 cut(s) 134, 222, 687, 936
EarI CTCTTC 4 cut(s) 134, 222, 687, 936
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 790, 1242
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 4 cut(s) 290, 350, 859, 878
Eco57I CTGAAG 3 cut(s) 951, 960, 1251
Eco81I CCTNAGG 1 cut(s) 1077
Eco88I CYCGRG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 8
EcoO65I GGTNACC 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 790, 1242
ErhI CCWWGG 2 cut(s) 790, 1242
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 6 cut(s) 416, 794, 874, 1090, 1102, 1246
FaqI GGGAC 3 cut(s) 567, 794, 1050
FatI CATG 6 cut(s) 412, 790, 870, 1086, 1098, 1242
FauI CCCGC 1 cut(s) 21
FauNDI CATATG 1 cut(s) 1181
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 5 cut(s) 17, 44, 183, 447, 936
FokI GGATG 3 cut(s) 868, 1166, 1223
Fsp4HI GCNGC 5 cut(s) 17, 44, 183, 447, 936
FspBI CTAG 3 cut(s) 264, 948, 1317
GluI GCNGC 5 cut(s) 17, 44, 183, 447, 936
GsaI CCCAGC 1 cut(s) 989
GsuI CTGGAG 2 cut(s) 216, 1218
HaeIII GGCC 2 cut(s) 513, 563
HgaI GACGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 6 cut(s) 416, 794, 874, 1090, 1102, 1246
HincII GTYRAC 2 cut(s) 832, 963
HindII GTYRAC 2 cut(s) 832, 963
HinfI GANTC 1 cut(s) 578
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 5 cut(s) 30, 832, 892, 963, 1223
Hpy188I TCNGA 6 cut(s) 190, 405, 583, 759, 1117, 1153
Hpy8I GTNNAC 5 cut(s) 30, 832, 892, 963, 1223
HpyAV CCTTC 7 cut(s) 85, 333, 497, 544, 598, 629, 1308
HpyCH4III ACNGT 3 cut(s) 27, 118, 1165
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 5 cut(s) 149, 667, 1133, 1223, 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 266, 750, 782
HpyF3I CTNAG 7 cut(s) 52, 189, 580, 686, 1005, 1077, 1114
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 6 cut(s) 416, 794, 874, 1090, 1102, 1246
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 5 cut(s) 405, 433, 814, 1063, 1095
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 5 cut(s) 85, 235, 790, 994, 1078
Lsp1109I GCAGC 3 cut(s) 194, 433, 922
LweI GCATC 5 cut(s) 136, 269, 1120, 1147, 1179
MaeI CTAG 3 cut(s) 264, 948, 1317
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 4 cut(s) 8, 721, 1000, 1252
MalI GATC 5 cut(s) 407, 435, 816, 1065, 1097
MboI GATC 5 cut(s) 405, 433, 814, 1063, 1095
MflI RGATCY 2 cut(s) 433, 814
MhlI GDGCHC 3 cut(s) 195, 1225, 1267
MluCI AATT 7 cut(s) 200, 392, 507, 540, 674, 777, 905
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 333
MseI TTAA 9 cut(s) 39, 207, 383, 770, 780, 930, 974, 1122, 1324
MvnI CGCG 1 cut(s) 1261
MwoI GCNNNNNNNGC 4 cut(s) 257, 266, 750, 782
NcoI CCATGG 2 cut(s) 790, 1242
NdeI CATATG 1 cut(s) 1181
NdeII GATC 5 cut(s) 405, 433, 814, 1063, 1095
NlaIII CATG 6 cut(s) 416, 794, 874, 1090, 1102, 1246
NlaIV GGNNCC 2 cut(s) 796, 879
NmuCI GTSAC 3 cut(s) 721, 1000, 1252
NspI RCATGY 1 cut(s) 416
PagI TCATGA 2 cut(s) 1086, 1098
PciSI GCTCTTC 1 cut(s) 936
PkrI GCNGC 5 cut(s) 18, 45, 184, 448, 937
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PshBI ATTAAT 1 cut(s) 930
PspEI GGTNACC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 985
PspN4I GGNNCC 2 cut(s) 796, 879
PspPI GGNCC 4 cut(s) 290, 350, 859, 878
PstNI CAGNNNCTG 3 cut(s) 188, 818, 1196
PsuI RGATCY 2 cut(s) 433, 814
RsaI GTAC 2 cut(s) 465, 1296
RsaNI GTAC 2 cut(s) 464, 1295
SapI GCTCTTC 1 cut(s) 936
SaqAI TTAA 9 cut(s) 39, 207, 383, 770, 780, 930, 974, 1122, 1324
SatI GCNGC 5 cut(s) 17, 44, 183, 447, 936
Sau3AI GATC 5 cut(s) 405, 433, 814, 1063, 1095
Sau96I GGNCC 4 cut(s) 290, 350, 859, 878
SchI GAGTC 1 cut(s) 572
SduI GDGCHC 3 cut(s) 195, 1225, 1267
SfaNI GCATC 5 cut(s) 136, 269, 1120, 1147, 1179
SfcI CTRYAG 1 cut(s) 1302
SinI GGWCC 4 cut(s) 290, 350, 859, 878
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 7 cut(s) 200, 392, 507, 540, 674, 777, 905
SsiI CCGC 9 cut(s) 14, 17, 44, 91, 136, 293, 330, 416, 1259
SspMI CTAG 3 cut(s) 264, 948, 1317
StyI CCWWGG 2 cut(s) 790, 1242
TaaI ACNGT 3 cut(s) 27, 118, 1165
TaiI ACGT 1 cut(s) 315
TaqI TCGA 3 cut(s) 63, 921, 1280
TasI AATT 7 cut(s) 200, 392, 507, 540, 674, 777, 905
TauI GCSGC 2 cut(s) 19, 46
Tru1I TTAA 9 cut(s) 39, 207, 383, 770, 780, 930, 974, 1122, 1324
Tru9I TTAA 9 cut(s) 39, 207, 383, 770, 780, 930, 974, 1122, 1324
TscAI CASTG 4 cut(s) 551, 694, 1009, 1075
TseFI GTSAC 3 cut(s) 721, 1000, 1252
TseI GCWGC 3 cut(s) 182, 446, 935
Tsp45I GTSAC 3 cut(s) 721, 1000, 1252
TspDTI ATGAA 5 cut(s) 600, 777, 993, 1075, 1115
TspGWI ACGGA 3 cut(s) 25, 490, 644
TspRI CASTG 4 cut(s) 551, 694, 1009, 1075
VneI GTGCAC 1 cut(s) 1221
VpaK11BI GGWCC 4 cut(s) 290, 350, 859, 878
VspI ATTAAT 1 cut(s) 930
XapI RAATTY 3 cut(s) 200, 392, 540
XceI RCATGY 1 cut(s) 416
XspI CTAG 3 cut(s) 264, 948, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.