AT5G22430

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015315
Physical Location & Seq
Forward (+)
7433790 .. 7434953
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22430.1

Sequence Viewer

Length: 519 bp
ATGGCGAATCAAGCAGCTGCTGCAGCATTCTTCCTTTTCGCTTTAGCCGTCTTCTCCAACTTGGAGCTCTCAGCTTCTTCACTTGTCAGTGGCAAGATCTCTTGCCTTGACTGCCACCGCGATTTCGACTTCTCAGGCATTAAGGTCCTCCTTAAATGCGACGGAGAGAAGAAACAAATAACCGCGGTGGCAGCTGCAGACGGATCTTTCCGGTCAGTGCTTCCAACGGCTGACAAAAAAGGCTCCATAAATTGTCTTGCAAAGCTCTTGGGAGGCCCTGAGCAACTCTATGCTCACAAACACAACTTGGTCTCTGAATTGGTCAAATCTAAACACGATTCCAAAGTTTTAACTACCTCAAACCCACTTGCCTTCTCTCTCTCCTGCCCCAAACCATCCCGAGATGATATCGGAAGTATGATCGGAGATTCCAAGACTATTAATTTTCCGGGGGCAGGAGGTTTTGGATTCCCACCTGCCAGCTTCTTTCCCTTCTTACCAATCATTGGTATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

172

Amino Acids

18.11

Weight (kDa)

8.61

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22430
fragaria_vesca FvH4_3g25370 FvH4_3g25370
malus_domestica MD03G1148100.v1.1 MD11G1167600.v1.1
prunus_persica Prupe.6G134300_v2.0.a1
pyrus_communis pycom03g10230
rosa_laevigata RLG00000034436
rosa_multiflora Rmu_sc0017747.1_g000005
rosa_roxburghii Rroxscaffold_1G00034660
rosa_rugosa Rorug05G0231100
rosa_samantha Rh5AG310900 Rh5BG319300 Rh5CG345200 Rh5DG329900
rosa_wichuraiana Rw5G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 484
Acc36I ACCTGC 1 cut(s) 484
AccB7I CCANNNNNTGG 1 cut(s) 506
AccII CGCG 2 cut(s) 120, 185
AciI CCGC 3 cut(s) 118, 183, 185
AclWI GGATC 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 455, 506
AluBI AGCT 6 cut(s) 17, 67, 74, 194, 265, 483
AluI AGCT 6 cut(s) 17, 67, 74, 194, 265, 483
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 6 cut(s) 14, 17, 20, 23, 191, 194
AseI ATTAAT 1 cut(s) 441
AspS9I GGNCC 2 cut(s) 145, 275
AsuC2I CCSGG 1 cut(s) 450
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 6 cut(s) 4, 7, 26, 35, 181, 203
BccI CCATC 1 cut(s) 403
BceAI ACGGC 2 cut(s) 32, 243
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 316
BfmI CTRYAG 2 cut(s) 21, 195
BfuAI ACCTGC 1 cut(s) 484
BglII AGATCT 1 cut(s) 96
BisI GCNGC 6 cut(s) 15, 18, 21, 24, 192, 195
BlsI GCNGC 6 cut(s) 16, 19, 22, 25, 193, 196
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 145, 275
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 183, 449
BsaWI WCCGGW 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 506
BseDI CCNNGG 2 cut(s) 183, 449
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 455, 506
BseMII CTCAG 3 cut(s) 84, 147, 270
BseXI GCAGC 6 cut(s) 4, 7, 26, 35, 181, 203
Bsh1236I CGCG 2 cut(s) 120, 185
BshFI GGCC 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 2 cut(s) 211, 449
BslI CCNNNNNNNGG 2 cut(s) 455, 506
BsmAI GTCTC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 96, 203, 420
BspACI CCGC 3 cut(s) 118, 183, 185
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 3 cut(s) 83, 146, 271
BspFNI CGCG 2 cut(s) 120, 185
BspLI GGNNCC 1 cut(s) 244
BspMAI CTGCAG 2 cut(s) 25, 199
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 183, 449
BssMI GATC 3 cut(s) 96, 203, 420
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 3 cut(s) 70, 133, 279
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 2 cut(s) 120, 185
BstKTI GATC 3 cut(s) 99, 206, 423
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 3 cut(s) 96, 203, 420
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 23, 111, 191
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 2 cut(s) 21, 195
BstUI CGCG 2 cut(s) 120, 185
BstV1I GCAGC 6 cut(s) 4, 7, 26, 35, 181, 203
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 2 cut(s) 96, 203
BstYI RGATCY 2 cut(s) 96, 203
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 94, 222
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 145, 275
Cfr42I CCGCGG 1 cut(s) 186
CviAII CATG 1 cut(s) 516
DdeI CTNAG 3 cut(s) 70, 133, 279
DpnI GATC 3 cut(s) 98, 205, 422
DpnII GATC 3 cut(s) 96, 203, 420
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 2 cut(s) 145, 275
EcoRV GATATC 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 1 cut(s) 519
FaiI YATR 4 cut(s) 248, 291, 419, 517
FatI CATG 1 cut(s) 515
Fnu4HI GCNGC 6 cut(s) 15, 18, 21, 24, 192, 195
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 6 cut(s) 15, 18, 21, 24, 192, 195
GluI GCNGC 6 cut(s) 15, 18, 21, 24, 192, 195
HaeIII GGCC 1 cut(s) 276
HapII CCGG 2 cut(s) 211, 449
Hin1II CATG 1 cut(s) 519
HinfI GANTC 4 cut(s) 7, 338, 428, 468
HpaII CCGG 2 cut(s) 211, 449
Hpy188I TCNGA 3 cut(s) 316, 413, 425
Hpy188III TCNNGA 1 cut(s) 399
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 382, 502
HpyCH4V TGCA 3 cut(s) 23, 197, 260
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 23, 111, 191
HpyF3I CTNAG 3 cut(s) 70, 133, 279
Hsp92II CATG 1 cut(s) 519
KspI CCGCGG 1 cut(s) 186
Kzo9I GATC 3 cut(s) 96, 203, 420
LmnI GCTCC 2 cut(s) 64, 248
LpnPI CCDG 8 cut(s) 120, 224, 291, 397, 441, 462, 489, 493
Lsp1109I GCAGC 6 cut(s) 4, 7, 26, 35, 181, 203
MalI GATC 3 cut(s) 98, 205, 422
MboI GATC 3 cut(s) 96, 203, 420
MboII GAAGA 4 cut(s) 22, 43, 69, 181
MflI RGATCY 2 cut(s) 96, 203
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 250, 317, 442
MmeI TCCRAC 2 cut(s) 81, 248
MnlI CCTC 4 cut(s) 158, 266, 367, 452
MseI TTAA 4 cut(s) 141, 153, 350, 441
MspA1I CMGCKG 3 cut(s) 17, 185, 194
MspI CCGG 2 cut(s) 211, 449
MspR9I CCNGG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 26
MvnI CGCG 2 cut(s) 120, 185
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 23, 111, 191
NciI CCSGG 1 cut(s) 450
NdeII GATC 3 cut(s) 96, 203, 420
NlaIII CATG 1 cut(s) 519
NlaIV GGNNCC 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 4 cut(s) 7, 338, 428, 468
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 6 cut(s) 16, 19, 22, 25, 193, 196
PpuMI RGGWCCY 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 145, 275
PspPPI RGGWCCY 1 cut(s) 145
PstI CTGCAG 2 cut(s) 25, 199
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 96, 203
PvuII CAGCTG 2 cut(s) 17, 194
SacI GAGCTC 1 cut(s) 69
SacII CCGCGG 1 cut(s) 186
SaqAI TTAA 4 cut(s) 141, 153, 350, 441
SatI GCNGC 6 cut(s) 15, 18, 21, 24, 192, 195
Sau3AI GATC 3 cut(s) 96, 203, 420
Sau96I GGNCC 2 cut(s) 145, 275
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 69
SfcI CTRYAG 2 cut(s) 21, 195
Sfr303I CCGCGG 1 cut(s) 186
SgrBI CCGCGG 1 cut(s) 186
SinI GGWCC 1 cut(s) 145
Sse9I AATT 3 cut(s) 250, 317, 442
SsiI CCGC 3 cut(s) 118, 183, 185
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 448
TaqI TCGA 1 cut(s) 126
TasI AATT 3 cut(s) 250, 317, 442
TfiI GAWTC 4 cut(s) 7, 338, 428, 468
Tru1I TTAA 4 cut(s) 141, 153, 350, 441
Tru9I TTAA 4 cut(s) 141, 153, 350, 441
TscAI CASTG 2 cut(s) 94, 222
TseI GCWGC 6 cut(s) 14, 17, 20, 23, 191, 194
TspGWI ACGGA 2 cut(s) 177, 216
TspRI CASTG 2 cut(s) 94, 222
Van91I CCANNNNNTGG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.