Prupe.6G134300_v2.0.a1

pollen Ole e 1 allergen and extensin family protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
10605030 .. 10605979
950 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G134300.1

Sequence Viewer

Length: 525 bp
ATGGCGCTTTCCTGGGTGCTCCCAACAACACTTCTCTTTGCTCTGGCTTTTGCAAACATTCAGCTCTCCACATGCCAAGTTGTGAAGGCCAAGGTCACTTGCCTTGACTGCCATCAAAATACTGATTTCTCGGGAATTAAGGTTCTGGTGAAGTGTGGTCAAGTGAAAAAGTTGGCAATGGCAACAACTGAAAAAGATGGTTCATTTGAGACTAAGCTCCCAGTAGGCAACTCAAAATCTCCTATGAACTGCCTTGCCAGGATTCTAGGAGGTCCAGACCAGCTCTATGCTTCAAGAAAAGTCGTGGCTTCTGAGATTGTCAAGACCCAAGAGCCTAACTCCTACACCATTTCAACTCCTCTTGGTTTCACCACATCATGCCCTTTGAACATAAAAGAGGCAGCTTGCAAAGCCATGAACAAGTTTGGCTCATCGAAGACCGTTAATCTGCCTCTGCCTCCAGACTGGGGCTTGGCACCCTCAAGCTATTATGTTCCCTTCATCCCTATCATTGGCATACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

18.7

Weight (kDa)

9.1

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22430
fragaria_vesca FvH4_3g25370 FvH4_3g25370
malus_domestica MD03G1148100.v1.1 MD11G1167600.v1.1
prunus_persica Prupe.6G134300_v2.0.a1
pyrus_communis pycom03g10230
rosa_laevigata RLG00000034436
rosa_multiflora Rmu_sc0017747.1_g000005
rosa_roxburghii Rroxscaffold_1G00034660
rosa_rugosa Rorug05G0231100
rosa_samantha Rh5AG310900 Rh5BG319300 Rh5CG345200 Rh5DG329900
rosa_wichuraiana Rw5G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AfiI CCNNNNNNNGG 2 cut(s) 467, 512
AgsI TTSAA 3 cut(s) 294, 354, 388
AjnI CCWGG 2 cut(s) 11, 257
AloI GAACNNNNNNTCC 2 cut(s) 126, 158
AluBI AGCT 5 cut(s) 64, 217, 283, 404, 486
AluI AGCT 5 cut(s) 64, 217, 283, 404, 486
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 160, 361
AvaI CYCGRG 1 cut(s) 130
AvaII GGWCC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 413
BccI CCATC 2 cut(s) 120, 191
BciT130I CCWGG 2 cut(s) 13, 259
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 13, 259
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 13, 259
BmrI ACTGGG 2 cut(s) 215, 475
BmuI ACTGGG 2 cut(s) 215, 475
BpiI GAAGAC 1 cut(s) 443
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 466
BsaJI CCNNGG 2 cut(s) 12, 90
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 512
Bse1I ACTGG 2 cut(s) 221, 470
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 13, 259
BseDI CCNNGG 2 cut(s) 12, 90
BseGI GGATG 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 467, 512
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 221, 470
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 413
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 467, 512
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 21
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 221, 470
BssECI CCNNGG 2 cut(s) 12, 90
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 13, 259
Bst4CI ACNGT 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 213, 312
BstF5I GGATG 1 cut(s) 501
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 203
BstMWI GCNNNNNNNGC 2 cut(s) 108, 410
BstNI CCWGG 2 cut(s) 13, 259
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 11, 257
BstV1I GCAGC 1 cut(s) 413
BstV2I GAAGAC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 406
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 272
CviAII CATG 3 cut(s) 72, 378, 415
DdeI CTNAG 2 cut(s) 213, 312
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 11, 257
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 75, 381, 418
FaiI YATR 8 cut(s) 73, 245, 288, 379, 392, 416, 492, 518
FatI CATG 3 cut(s) 71, 377, 414
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 75, 381, 418
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 262
HphI GGTGA 2 cut(s) 160, 361
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 5 cut(s) 132, 275, 294, 322, 461
HpyAV CCTTC 2 cut(s) 79, 508
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 2 cut(s) 53, 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 410
HpyF3I CTNAG 2 cut(s) 213, 312
Hsp92II CATG 3 cut(s) 75, 381, 418
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 24, 222
Lsp1109I GCAGC 1 cut(s) 413
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 94
MboII GAAGA 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 135
MnlI CCTC 6 cut(s) 263, 369, 391, 462, 468, 490
MseI TTAA 3 cut(s) 138, 444, 523
MspR9I CCNGG 2 cut(s) 13, 259
MvaI CCWGG 2 cut(s) 13, 259
MwoI GCNNNNNNNGC 2 cut(s) 108, 410
NlaIII CATG 3 cut(s) 75, 381, 418
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 75
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 11, 257
PspGI CCWGG 2 cut(s) 11, 257
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 138, 444, 523
SatI GCNGC 1 cut(s) 402
Sau96I GGNCC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 13, 259
SduI GDGCHC 1 cut(s) 21
SetI ASST 9 cut(s) 66, 96, 144, 219, 274, 285, 406, 488, 523
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
Sse9I AATT 1 cut(s) 135
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 11, 257
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 434
TasI AATT 1 cut(s) 135
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 3 cut(s) 138, 444, 523
Tru9I TTAA 3 cut(s) 138, 444, 523
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 4 cut(s) 192, 260, 431, 490
VpaK11BI GGWCC 1 cut(s) 272
XceI RCATGY 1 cut(s) 75
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.