FvH4_3g25370

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015315
Physical Location & Seq
Forward (+)
18300230 .. 18301539
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25370.t2

Sequence Viewer

Length: 537 bp
ATGGCTACTCTTTCCGGCTGGGTCGTCTCAACACTTCTCTTTGCATTGTTTCTTGCAAAGTTTGAGCTCTCATATGGCCAAGTTCTGAAAGCCAAAGTCACTTGCCTTGATTGCCACAAGAATTATGATTTTTCAGGAATTAAGGTTTTAGTGAAGTGTGACCAAGTGAAGAAGCTGGCTACGGCAACCACAGAAGCTGATGGATCTTTCGAGGTTAAGCTTCCATCTGACGATTCGAAATCTCCAGCATCTCTTCACTGCCTTGCCAAGATTCTTGGAGGTACAAAGCAGCTCTATGTCTCAAGGAAGGTCGTGGCATCAAAGATTCTGAAGACTCATGACTCTAATTCCTATACCATTTCAACTCCTCTTAGTTTCTTCACATCATGCCCCTTGAGTATCGAAGATCAGGCGGCTTGTAAAGCCAAGAACGAGGTCGGTTCATCCAAGACATTCAATCTGCCTCTTCCACCAGAATGGGGTTTGGCACCTTCTAGCTTCTATGTTCCTTTCTTCCCTATCATAGGCATACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

179

Amino Acids

19.3

Weight (kDa)

8.85

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22430
fragaria_vesca FvH4_3g25370 FvH4_3g25370
malus_domestica MD03G1148100.v1.1 MD11G1167600.v1.1
prunus_persica Prupe.6G134300_v2.0.a1
pyrus_communis pycom03g10230
rosa_laevigata RLG00000034436
rosa_multiflora Rmu_sc0017747.1_g000005
rosa_roxburghii Rroxscaffold_1G00034660
rosa_rugosa Rorug05G0231100
rosa_samantha Rh5AG310900 Rh5BG319300 Rh5CG345200 Rh5DG329900
rosa_wichuraiana Rw5G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 479, 524
AgsI TTSAA 2 cut(s) 363, 457
AluBI AGCT 6 cut(s) 67, 175, 197, 220, 292, 498
AluI AGCT 6 cut(s) 67, 175, 197, 220, 292, 498
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 31, 304
AlwI GGATC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 236
BalI TGGCCA 1 cut(s) 78
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 301
BccI CCATC 2 cut(s) 194, 232
BceAI ACGGC 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 31, 304
BfaI CTAG 1 cut(s) 495
BisI GCNGC 2 cut(s) 290, 414
BlsI GCNGC 2 cut(s) 291, 415
BmiI GGNNCC 1 cut(s) 489
BmsI GCATC 2 cut(s) 257, 326
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 236
BpuEI CTTGAG 2 cut(s) 286, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 524
BseGI GGATG 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 479, 524
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 479, 524
BsmAI GTCTC 2 cut(s) 31, 304
BsmBI CGTCTC 1 cut(s) 31
BsnI GGCC 1 cut(s) 78
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 203, 406
BspACI CCGC 1 cut(s) 413
BspANI GGCC 1 cut(s) 78
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 489
BspPI GGATC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 487
BssMI GATC 2 cut(s) 203, 406
Bst6I CTCTTC 2 cut(s) 258, 471
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 371
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 443
BstKTI GATC 2 cut(s) 206, 409
BstMAI GTCTC 2 cut(s) 31, 304
BstMBI GATC 2 cut(s) 203, 406
BstMWI GCNNNNNNNGC 2 cut(s) 111, 422
BstV1I GCAGC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 477
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 337
Csp6I GTAC 1 cut(s) 282
CviAII CATG 2 cut(s) 338, 387
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 371
DpnI GATC 2 cut(s) 205, 408
DpnII GATC 2 cut(s) 203, 406
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 258, 471
EarI CTCTTC 2 cut(s) 258, 471
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 2 cut(s) 341, 390
FatI CATG 2 cut(s) 337, 386
FauNDI CATATG 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 290, 414
FokI GGATG 1 cut(s) 430
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 290, 414
FspBI CTAG 1 cut(s) 495
GluI GCNGC 2 cut(s) 290, 414
GsaI CCCAGC 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 15
Hin1II CATG 2 cut(s) 341, 390
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 5 cut(s) 233, 271, 325, 334, 341
HpaII CCGG 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 87, 229, 330
Hpy188III TCNNGA 2 cut(s) 135, 338
HpyAV CCTTC 2 cut(s) 301, 501
HpyCH4V TGCA 2 cut(s) 44, 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 422
HpyF3I CTNAG 1 cut(s) 371
Hsp92II CATG 2 cut(s) 341, 390
Kzo9I GATC 2 cut(s) 203, 406
LpnPI CCDG 7 cut(s) 4, 28, 120, 161, 258, 395, 486
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 257, 326
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 97, 158
MalI GATC 2 cut(s) 205, 408
MboI GATC 2 cut(s) 203, 406
MboII GAAGA 7 cut(s) 181, 245, 343, 370, 416, 458, 505
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 3 cut(s) 121, 138, 346
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 2 cut(s) 328, 335
MnlI CCTC 5 cut(s) 205, 272, 378, 427, 474
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 2 cut(s) 141, 216
MslI CAYNNNNRTG 1 cut(s) 475
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 111, 422
NdeI CATATG 1 cut(s) 73
NdeII GATC 2 cut(s) 203, 406
NlaIII CATG 2 cut(s) 341, 390
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 2 cut(s) 97, 158
NspV TTCGAA 1 cut(s) 236
PagI TCATGA 1 cut(s) 337
PfeI GAWTC 3 cut(s) 233, 271, 325
PkrI GCNGC 2 cut(s) 291, 415
PleI GAGTC 2 cut(s) 328, 335
PpsI GAGTC 2 cut(s) 328, 335
Psp124BI GAGCTC 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 489
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 203
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 475
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 141, 216
SatI GCNGC 2 cut(s) 290, 414
Sau3AI GATC 2 cut(s) 203, 406
SchI GAGTC 2 cut(s) 328, 335
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 257, 326
SfuI TTCGAA 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 301, 394
SmoI CTYRAG 2 cut(s) 301, 394
Sse9I AATT 3 cut(s) 121, 138, 346
SsiI CCGC 1 cut(s) 413
SspMI CTAG 1 cut(s) 495
SstI GAGCTC 1 cut(s) 69
TaqI TCGA 3 cut(s) 210, 236, 402
TasI AATT 3 cut(s) 121, 138, 346
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 3 cut(s) 233, 271, 325
Tru1I TTAA 2 cut(s) 141, 216
Tru9I TTAA 2 cut(s) 141, 216
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 2 cut(s) 97, 158
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 2 cut(s) 97, 158
TspDTI ATGAA 1 cut(s) 432
TspRI CASTG 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 522
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.