Rmu_sc0017747.1_g000005

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017747.1
OG0015315
Physical Location & Seq
Forward (+)
17562 .. 18338
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017747.1_g000005.1.cds

Sequence Viewer

Length: 537 bp
atggctgctctttccggcttggtcctcccaacacttctctttgcattgtctcttgcaacctttgagctctccaatggccaagttctgaaggccaaagtcacttgccttgattgccacaagaattatgatttttcaggtattaaggttttagtgaagtgtgctcaagtcaagaagctggctatggcaaccacagaagctgacggatctttcgaggctaagctcccatccgacgactcgaaatctcccgcagctcttcactgccttgccaagattcttggaggtacaaaccagttctatgtctcaaggaaggtcgtggtatccaaaattgtgaagacccatgactctaactcctacaccatttccactcctcttggtttctccacatcatgccccttgagtatcaaagatcaggcggcttgtaaagccaagaacgagtttggttcatccaagaccgtcgatgtgcctctgccgccagagtggggtttggcaccttctagctactatgttcctttcatccctatcataggcataccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

178

Amino Acids

18.94

Weight (kDa)

8.86

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22430
fragaria_vesca FvH4_3g25370 FvH4_3g25370
malus_domestica MD03G1148100.v1.1 MD11G1167600.v1.1
prunus_persica Prupe.6G134300_v2.0.a1
pyrus_communis pycom03g10230
rosa_laevigata RLG00000034436
rosa_multiflora Rmu_sc0017747.1_g000005
rosa_roxburghii Rroxscaffold_1G00034660
rosa_rugosa Rorug05G0231100
rosa_samantha Rh5AG310900 Rh5BG319300 Rh5CG345200 Rh5DG329900
rosa_wichuraiana Rw5G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AciI CCGC 3 cut(s) 246, 413, 470
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 479, 524
AluBI AGCT 6 cut(s) 67, 175, 197, 220, 251, 498
AluI AGCT 6 cut(s) 67, 175, 197, 220, 251, 498
Alw21I GWGCWC 2 cut(s) 69, 163
Alw26I GTCTC 2 cut(s) 54, 304
AlwI GGATC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 2 cut(s) 76, 90
ApeKI GCWGC 2 cut(s) 5, 248
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspS9I GGNCC 1 cut(s) 22
AvaII GGWCC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 78
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 2 cut(s) 69, 163
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 232
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 54, 304
BfaI CTAG 1 cut(s) 495
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 4 cut(s) 6, 249, 414, 470
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 4 cut(s) 7, 250, 415, 471
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 3 cut(s) 147, 286, 415
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 524
Bse1I ACTGG 1 cut(s) 289
BseGI GGATG 3 cut(s) 224, 443, 513
BseLI CCNNNNNNNGG 2 cut(s) 479, 524
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 260
BshFI GGCC 2 cut(s) 78, 92
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 2 cut(s) 69, 163
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 479, 524
BsmAI GTCTC 2 cut(s) 54, 304
BsnI GGCC 2 cut(s) 78, 92
Bsp1286I GDGCHC 2 cut(s) 69, 163
Bsp143I GATC 2 cut(s) 203, 406
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 3 cut(s) 246, 413, 470
BspANI GGCC 2 cut(s) 78, 92
BspLI GGNNCC 1 cut(s) 489
BspPI GGATC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 487
BsrI ACTGG 1 cut(s) 289
BssMI GATC 2 cut(s) 203, 406
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 216
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 3 cut(s) 224, 443, 513
BstKTI GATC 2 cut(s) 206, 409
BstMAI GTCTC 2 cut(s) 54, 304
BstMBI GATC 2 cut(s) 203, 406
BstMWI GCNNNNNNNGC 3 cut(s) 111, 422, 469
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 2 cut(s) 78, 92
BtsCI GGATG 3 cut(s) 224, 443, 513
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 282
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 2 cut(s) 338, 387
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 216
DpnI GATC 2 cut(s) 205, 408
DpnII GATC 2 cut(s) 203, 406
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 2 cut(s) 341, 390
FaiI YATR 8 cut(s) 126, 182, 297, 339, 388, 504, 524, 530
FatI CATG 2 cut(s) 337, 386
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 6, 249, 414, 470
FokI GGATG 3 cut(s) 211, 430, 500
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 6, 249, 414, 470
FspBI CTAG 1 cut(s) 495
GluI GCNGC 4 cut(s) 6, 249, 414, 470
HaeIII GGCC 2 cut(s) 78, 92
HapII CCGG 1 cut(s) 15
Hin1II CATG 2 cut(s) 341, 390
HinfI GANTC 3 cut(s) 233, 271, 341
HpaII CCGG 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 87, 229
Hpy188III TCNNGA 1 cut(s) 169
Hpy99I CGWCG 2 cut(s) 233, 458
HpyAV CCTTC 3 cut(s) 82, 301, 501
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4V TGCA 2 cut(s) 44, 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 422, 469
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 2 cut(s) 341, 390
Kzo9I GATC 2 cut(s) 203, 406
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 6 cut(s) 28, 120, 161, 302, 395, 486
Lsp1109I GCAGC 1 cut(s) 260
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 205, 408
MboI GATC 2 cut(s) 203, 406
MboII GAAGA 2 cut(s) 245, 343
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 2 cut(s) 69, 163
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 2 cut(s) 121, 324
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 2 cut(s) 227, 335
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 5 cut(s) 35, 205, 272, 378, 474
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 111, 422, 469
NdeII GATC 2 cut(s) 203, 406
NlaIII CATG 2 cut(s) 341, 390
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 4 cut(s) 7, 250, 415, 471
PleI GAGTC 2 cut(s) 227, 335
PpsI GAGTC 2 cut(s) 227, 335
Psp124BI GAGCTC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 203
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SacI GAGCTC 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 4 cut(s) 6, 249, 414, 470
Sau3AI GATC 2 cut(s) 203, 406
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 2 cut(s) 227, 335
SduI GDGCHC 2 cut(s) 69, 163
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 3 cut(s) 162, 301, 394
SmoI CTYRAG 3 cut(s) 162, 301, 394
Sse9I AATT 2 cut(s) 121, 324
SsiI CCGC 3 cut(s) 246, 413, 470
SspMI CTAG 1 cut(s) 495
SstI GAGCTC 1 cut(s) 69
TaaI ACNGT 1 cut(s) 454
TaqI TCGA 3 cut(s) 210, 236, 456
TasI AATT 2 cut(s) 121, 324
TauI GCSGC 2 cut(s) 416, 472
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 2 cut(s) 5, 248
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 432, 502
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 22
XagI CCTNNNNNAGG 1 cut(s) 522
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.