MD11G1167600.v1.1

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015315
Physical Location & Seq
Forward (+)
17827932 .. 17829711
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1167600.v1.1.491

Sequence Viewer

Length: 531 bp
ATGGCGCTTTCCTGGATTCTCCCAGCACTTCTCTTTGCTTTGGTTCTTGCAAATGTCGAGACCTCCACATGCCAAGTTCTGAAGGGCAAGGTCACTTGCCTTGATTGCCATCAAAACTATGATTTCTCAGAAATCAAGGTTTTGGTGAAGTGTGACAAAGTGAAGAAGTTGGCAATGGCAATAACAGAAAAGGATGGCTCTTTTGAAGCAAAGCTCCCATCAAACAACAACCCTAAAACTCCAGAAGCTATGAACTGCCTCGCCAGGATTCTTGGAGGACCAGATCAGCTCTATTCCTCCAGGAAATTCTTGGCATCTGAGATTGTCAAGACCCAAGACTCCAACACTTACACCACTTCAACTCCTCTTGGTTTCTCTACATCATGCCCTTTGAACATCAAAGATGCAGCCTGTAAAGCCATAAACAAGTTTGGTTCATCCAAGACTATTGATGTGCCTCTACCACCAGGGTGGGGGTTGGCACCCTCAAGCTATTATGTTCCTTTCATCCCCATCATTGGGATACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

177

Amino Acids

19.06

Weight (kDa)

8.64

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22430
fragaria_vesca FvH4_3g25370 FvH4_3g25370
malus_domestica MD03G1148100.v1.1 MD11G1167600.v1.1
prunus_persica Prupe.6G134300_v2.0.a1
pyrus_communis pycom03g10230
rosa_laevigata RLG00000034436
rosa_multiflora Rmu_sc0017747.1_g000005
rosa_roxburghii Rroxscaffold_1G00034660
rosa_rugosa Rorug05G0231100
rosa_samantha Rh5AG310900 Rh5BG319300 Rh5CG345200 Rh5DG329900
rosa_wichuraiana Rw5G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 101
AfiI CCNNNNNNNGG 3 cut(s) 473, 518, 519
AgsI TTSAA 3 cut(s) 206, 360, 394
AjnI CCWGG 4 cut(s) 11, 263, 299, 466
AleI CACNNNNGTG 1 cut(s) 469
AluBI AGCT 4 cut(s) 214, 248, 289, 492
AluI AGCT 4 cut(s) 214, 248, 289, 492
Alw26I GTCTC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 305
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 419
BccI CCATC 4 cut(s) 117, 188, 226, 521
BciT130I CCWGG 4 cut(s) 13, 265, 301, 468
BciVI GTATCC 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 516
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 4 cut(s) 13, 265, 301, 468
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 4 cut(s) 13, 265, 301, 468
BmsI GCATC 2 cut(s) 323, 394
BpmI CTGGAG 2 cut(s) 225, 283
BpuEI CTTGAG 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 518, 519
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 4 cut(s) 13, 265, 301, 468
BseDI CCNNGG 1 cut(s) 467
BseGI GGATG 3 cut(s) 199, 437, 507
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 3 cut(s) 473, 518, 519
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 141, 309
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 473, 518, 519
BsmAI GTCTC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 140, 310
BspLI GGNNCC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 467
BssMI GATC 1 cut(s) 283
Bst2UI CCWGG 4 cut(s) 13, 265, 301, 468
BstDEI CTNAG 2 cut(s) 127, 318
BstF5I GGATG 3 cut(s) 199, 437, 507
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 105, 416
BstNI CCWGG 4 cut(s) 13, 265, 301, 468
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 4 cut(s) 11, 263, 299, 466
BstV1I GCAGC 1 cut(s) 419
BstXI CCANNNNNNTGG 1 cut(s) 471
BsuI GTATCC 1 cut(s) 516
BtsCI GGATG 3 cut(s) 199, 437, 507
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 278
CviAII CATG 2 cut(s) 69, 384
CviJI RGCY 7 cut(s) 198, 214, 248, 289, 410, 419, 492
CviKI_1 RGCY 7 cut(s) 198, 214, 248, 289, 410, 419, 492
DdeI CTNAG 2 cut(s) 127, 318
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 101
EcoRII CCWGG 4 cut(s) 11, 263, 299, 466
FaeI CATG 2 cut(s) 72, 387
FaiI YATR 6 cut(s) 70, 120, 251, 385, 422, 498
FatI CATG 2 cut(s) 68, 383
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 3 cut(s) 206, 424, 494
Fsp4HI GCNGC 1 cut(s) 408
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 408
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 2 cut(s) 225, 283
HaeII RGCGCY 1 cut(s) 8
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 72, 387
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 16, 268, 338
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 81, 130, 319
Hpy188III TCNNGA 3 cut(s) 58, 242, 328
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 50, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 416
HpyF3I CTNAG 2 cut(s) 127, 318
Hsp92II CATG 2 cut(s) 72, 387
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 219
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 2 cut(s) 323, 394
MaeIII GTNAC 2 cut(s) 91, 152
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 175
MluCI AATT 1 cut(s) 305
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 7 cut(s) 73, 269, 269, 307, 375, 468, 496
MseI TTAA 1 cut(s) 529
MslI CAYNNNNRTG 1 cut(s) 469
MspR9I CCNGG 4 cut(s) 13, 265, 301, 468
MvaI CCWGG 4 cut(s) 13, 265, 301, 468
MwoI GCNNNNNNNGC 2 cut(s) 105, 416
NdeII GATC 1 cut(s) 283
NlaIII CATG 2 cut(s) 72, 387
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 2 cut(s) 91, 152
NspI RCATGY 1 cut(s) 72
OliI CACNNNNGTG 1 cut(s) 469
PfeI GAWTC 2 cut(s) 16, 268
PfoI TCCNGGA 2 cut(s) 11, 299
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 4 cut(s) 11, 263, 299, 466
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 4 cut(s) 11, 263, 299, 466
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 469
SaqAI TTAA 1 cut(s) 529
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 4 cut(s) 13, 265, 301, 468
SetI ASST 8 cut(s) 65, 93, 141, 216, 250, 291, 494, 529
SfaNI GCATC 2 cut(s) 323, 394
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
Sse9I AATT 1 cut(s) 305
StyD4I CCNGG 4 cut(s) 11, 263, 299, 466
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 305
TfiI GAWTC 2 cut(s) 16, 268
Tru1I TTAA 1 cut(s) 529
Tru9I TTAA 1 cut(s) 529
TseFI GTSAC 2 cut(s) 91, 152
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 2 cut(s) 91, 152
TspDTI ATGAA 3 cut(s) 266, 426, 496
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.