Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020945

Physical Location & Seq

Genomic Coordinates Reverse (-)

7798168 .. 7799628

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAGGAGTTCGATTACGACAAGCTTGTCACTGCCATAGATCGATTCTCTCCTTCGAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCATCACCAAGACGTTGACGAAACACGTCAAAGAGTCGTAGCCATTAAAACACCATCATCATTATCTCCCTCATCACCATCCTCATCATCATCATCAAAATCAGAACAAACGAAGAAACTAGAAAACGAGATCGACGTTATGTCATCGTTACCTTATCACCCACACGTGTTAAGCTTTCTCGGCCATGCCGAGAAAAAACTCATGGTCGTTGAGTACATGCCAAACGAATCGTTATACCAATTATTACACGTGTCAACTGATCCTCTTCCCACGTGGCTTAAACGCATCGAAATCGCTCTTCAGATCGCGAGTGCGGTTCACTTCCTCCATGAACACGGTATCATCCACCGCGATATCAAATCGGAAAATATTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCGTTGATTTTGGAGGTGATAAGAAGATAAGACCGGCTCCGGCGGGAACTATTGGATACTTAGATCCGTGTTACACGTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTGTCGTTTTGTTGGAGATTGTTAGTTGTAGAAAAGCTATTGACGTCTCTCGTTCGCCGGCGTCGATAGTAGACTGGGCGGTTCCGTTGATTAAGGAAGGGAGGATCGGAGAAATATGCGGCGGAGGAGGAGGAGGATCGGGTGTTTTCCGGGGAATGAGTCTACGGTTGTTGCGTATGGCGGCGAGATGCGTTTCATCTGACGTGGAATCACGACCGTGTTTCGGGGAGATCACGGCGGAGATAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATGAGCGTTTTGCGTCGGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTCAAACTTGCCGCGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

341

Amino Acids

38.0

Weight (kDa)

8.94

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 228	6e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 294	7.4e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23170
malus_domestica	MD08G1239700.v1.1 MD15G1431200.v1.1
prunus_persica	Prupe.1G576200_v2.0.a1
pyrus_communis	pycom08g20790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AasI	GACNNNNNNGTC	1 cut(s)	26
AatII	GACGTC	1 cut(s)	690
AccI	GTMKAC	2 cut(s)	714, 805
AccII	CGCG	3 cut(s)	413, 456, 1017
AclWI	GGATC	4 cut(s)	359, 581, 755, 787
AcoI	YGGCCR	2 cut(s)	286, 998
AcuI	CTGAAG	1 cut(s)	389
AcvI	CACGTG	3 cut(s)	271, 355, 378
AcyI	GRCGYC	2 cut(s)	687, 704
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflIII	ACRYGT	6 cut(s)	128, 268, 270, 352, 354, 597
AgsI	TTSAA	1 cut(s)	913
AhdI	GACNNNNNGTC	1 cut(s)	244
AjiI	CACGTC	3 cut(s)	131, 847, 996
AleI	CACNNNNGTG	1 cut(s)	859
AluBI	AGCT	4 cut(s)	25, 279, 505, 680
AluI	AGCT	4 cut(s)	25, 279, 505, 680
Alw26I	GTCTC	1 cut(s)	694
AlwI	GGATC	4 cut(s)	359, 581, 755, 787
AoxI	GGCC	2 cut(s)	286, 998
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	2 cut(s)	794, 1002
AsuHPI	GGTGA	4 cut(s)	101, 171, 254, 551
AsuII	TTCGAA	2 cut(s)	56, 488
BbrPI	CACGTG	3 cut(s)	271, 355, 378
BbsI	GAAGAC	1 cut(s)	629
BccI	CCATC	2 cut(s)	166, 190
BceAI	ACGGC	4 cut(s)	509, 894, 907, 980
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciVI	GTATCC	1 cut(s)	572
BcnI	CCSGG	2 cut(s)	794, 1002
BcoDI	GTCTC	1 cut(s)	694
BfaI	CTAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	3 cut(s)	763, 825, 1015
BlsI	GCNGC	3 cut(s)	764, 826, 1016
Bme1390I	CCNGG	2 cut(s)	794, 1002
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgBI	CACGTC	3 cut(s)	131, 847, 996
BmiI	GGNNCC	3 cut(s)	561, 726, 906
BmrFI	CCNGG	2 cut(s)	794, 1002
BmrI	ACTGGG	1 cut(s)	727
BmsI	GCATC	2 cut(s)	399, 821
BmuI	ACTGGG	1 cut(s)	727
BpiI	GAAGAC	1 cut(s)	629
Bpu14I	TTCGAA	2 cut(s)	56, 488
BpuMI	CCSGG	2 cut(s)	794, 1002
Bsa29I	ATCGAT	1 cut(s)	43
BsaAI	YACGTR	3 cut(s)	271, 355, 378
BsaHI	GRCGYC	2 cut(s)	687, 704
BsaJI	CCNNGG	2 cut(s)	79, 793
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse118I	RCCGGY	2 cut(s)	556, 700
Bse1I	ACTGG	1 cut(s)	722
BseCI	ATCGAT	1 cut(s)	43
BseDI	CCNNGG	2 cut(s)	79, 793
BseGI	GGATG	3 cut(s)	182, 447, 936
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	3 cut(s)	783, 786, 789
Bsh1236I	CGCG	3 cut(s)	413, 456, 1017
Bsh1285I	CGRYCG	1 cut(s)	860
BshFI	GGCC	2 cut(s)	288, 1000
BshVI	ATCGAT	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	860
BsiSI	CCGG	6 cut(s)	557, 563, 605, 701, 793, 1001
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	1 cut(s)	694
BsmBI	CGTCTC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	288, 1000
Bsp119I	TTCGAA	2 cut(s)	56, 488
Bsp143I	GATC	8 cut(s)	40, 234, 364, 408, 586, 747, 779, 873
Bsp19I	CCATGG	1 cut(s)	79
Bsp68I	TCGCGA	1 cut(s)	413
BspANI	GGCC	2 cut(s)	288, 1000
BspCNI	CTCAG	1 cut(s)	606
BspDI	ATCGAT	1 cut(s)	43
BspFNI	CGCG	3 cut(s)	413, 456, 1017
BspLI	GGNNCC	3 cut(s)	561, 726, 906
BspPI	GGATC	4 cut(s)	359, 581, 755, 787
BspQI	GCTCTTC	1 cut(s)	408
BspT104I	TTCGAA	2 cut(s)	56, 488
BsrFI	RCCGGY	2 cut(s)	556, 700
BsrI	ACTGG	1 cut(s)	722
BssAI	RCCGGY	2 cut(s)	556, 700
BssECI	CCNNGG	2 cut(s)	79, 793
BssMI	GATC	8 cut(s)	40, 234, 364, 408, 586, 747, 779, 873
BssNI	GRCGYC	2 cut(s)	687, 704
BssT1I	CCWWGG	1 cut(s)	79
Bst4CI	ACNGT	6 cut(s)	443, 644, 810, 861, 909, 978
Bst6I	CTCTTC	3 cut(s)	375, 408, 908
BstACI	GRCGYC	2 cut(s)	687, 704
BstBAI	YACGTR	3 cut(s)	271, 355, 378
BstBI	TTCGAA	2 cut(s)	56, 488
BstC8I	GCNNGC	2 cut(s)	507, 702
BstDEI	CTNAG	2 cut(s)	583, 614
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	182, 447, 936
BstFNI	CGCG	3 cut(s)	413, 456, 1017
BstKTI	GATC	8 cut(s)	43, 237, 367, 411, 589, 750, 782, 876
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	8 cut(s)	40, 234, 364, 408, 586, 747, 779, 873
BstMCI	CGRYCG	1 cut(s)	860
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 506, 899, 997
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	792, 1000
BstUI	CGCG	3 cut(s)	413, 456, 1017
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
Bsu15I	ATCGAT	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	288, 1000
BsuTUI	ATCGAT	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	79
BtrI	CACGTC	3 cut(s)	131, 847, 996
BtsCI	GGATG	3 cut(s)	182, 447, 936
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
BtuMI	TCGCGA	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	507, 702
Cfr10I	RCCGGY	2 cut(s)	556, 700
ClaI	ATCGAT	1 cut(s)	43
CseI	GACGC	2 cut(s)	693, 932
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	5 cut(s)	80, 290, 307, 322, 434
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	2 cut(s)	583, 614
DpnI	GATC	8 cut(s)	42, 236, 366, 410, 588, 749, 781, 875
DpnII	GATC	8 cut(s)	40, 234, 364, 408, 586, 747, 779, 873
DrdI	GACNNNNNNGTC	1 cut(s)	26
DriI	GACNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	2 cut(s)	286, 998
Eam1104I	CTCTTC	3 cut(s)	375, 408, 908
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	3 cut(s)	375, 408, 908
EciI	GGCGGA	4 cut(s)	780, 896, 917, 982
Eco130I	CCWWGG	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	389
Eco72I	CACGTG	3 cut(s)	271, 355, 378
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	694
FaeI	CATG	5 cut(s)	83, 293, 310, 325, 437
FalI	AAGNNNNNCTT	4 cut(s)	87, 119, 489, 521
FatI	CATG	5 cut(s)	79, 289, 306, 321, 433
FauI	CCCGC	1 cut(s)	559
FblI	GTMKAC	2 cut(s)	714, 805
Fnu4HI	GCNGC	3 cut(s)	763, 825, 1015
FokI	GGATG	3 cut(s)	169, 434, 943
Fsp4HI	GCNGC	3 cut(s)	763, 825, 1015
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	3 cut(s)	763, 825, 1015
HaeIII	GGCC	2 cut(s)	288, 1000
HapII	CCGG	6 cut(s)	557, 563, 605, 701, 793, 1001
HgaI	GACGC	2 cut(s)	693, 932
Hin1I	GRCGYC	2 cut(s)	687, 704
Hin1II	CATG	5 cut(s)	83, 293, 310, 325, 437
HincII	GTYRAC	2 cut(s)	121, 360
HindII	GTYRAC	2 cut(s)	121, 360
HindIII	AAGCTT	3 cut(s)	23, 277, 503
HinfI	GANTC	8 cut(s)	45, 138, 332, 485, 519, 610, 802, 851
HpaII	CCGG	6 cut(s)	557, 563, 605, 701, 793, 1001
HphI	GGTGA	4 cut(s)	101, 171, 254, 551
Hpy166II	GTNNAC	5 cut(s)	121, 360, 424, 715, 806
Hpy188I	TCNGA	7 cut(s)	208, 408, 469, 518, 615, 752, 844
Hpy188III	TCNNGA	2 cut(s)	412, 855
Hpy8I	GTNNAC	5 cut(s)	121, 360, 424, 715, 806
Hpy99I	CGWCG	3 cut(s)	242, 709, 948
HpyAV	CCTTC	3 cut(s)	63, 110, 734
HpyCH4III	ACNGT	6 cut(s)	443, 644, 810, 861, 909, 978
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 506, 899, 997
HpyF3I	CTNAG	2 cut(s)	583, 614
Hsp92I	GRCGYC	2 cut(s)	687, 704
Hsp92II	CATG	5 cut(s)	83, 293, 310, 325, 437
KroI	GCCGGC	1 cut(s)	700
KroNI	GCCGGC	1 cut(s)	702
Kzo9I	GATC	8 cut(s)	40, 234, 364, 408, 586, 747, 779, 873
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	7 cut(s)	570, 576, 618, 703, 714, 806, 1014
LweI	GCATC	2 cut(s)	399, 821
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	5 cut(s)	28, 252, 593, 600, 638
MalI	GATC	8 cut(s)	42, 236, 366, 410, 588, 749, 781, 875
MboI	GATC	8 cut(s)	40, 234, 364, 408, 586, 747, 779, 873
MboII	GAAGA	7 cut(s)	95, 229, 362, 395, 559, 634, 925
MflI	RGATCY	1 cut(s)	586
MluCI	AATT	2 cut(s)	344, 490
MlyI	GAGTC	3 cut(s)	147, 513, 811
MmeI	TCCRAC	1 cut(s)	636
MreI	CGCCGGCG	1 cut(s)	700
MroNI	GCCGGC	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	5 cut(s)	150, 275, 384, 735, 954
MslI	CAYNNNNRTG	2 cut(s)	84, 859
MspI	CCGG	6 cut(s)	557, 563, 605, 701, 793, 1001
MspR9I	CCNGG	2 cut(s)	794, 1002
MvnI	CGCG	3 cut(s)	413, 456, 1017
MwoI	GCNNNNNNNGC	4 cut(s)	285, 506, 899, 997
NaeI	GCCGGC	1 cut(s)	702
NciI	CCSGG	2 cut(s)	794, 1002
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	8 cut(s)	40, 234, 364, 408, 586, 747, 779, 873
NgoMIV	GCCGGC	1 cut(s)	700
NlaIII	CATG	5 cut(s)	83, 293, 310, 325, 437
NlaIV	GGNNCC	3 cut(s)	561, 726, 906
NmeAIII	GCCGAG	2 cut(s)	264, 319
NmuCI	GTSAC	1 cut(s)	28
NruI	TCGCGA	1 cut(s)	413
NspI	RCATGY	1 cut(s)	325
NspV	TTCGAA	2 cut(s)	56, 488
OliI	CACNNNNGTG	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	5 cut(s)	237, 291, 522, 704, 814
PdiI	GCCGGC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	45, 332, 485, 610, 851
PkrI	GCNGC	3 cut(s)	764, 826, 1016
PleI	GAGTC	3 cut(s)	146, 513, 810
PmaCI	CACGTG	3 cut(s)	271, 355, 378
PmlI	CACGTG	3 cut(s)	271, 355, 378
PpsI	GAGTC	3 cut(s)	146, 513, 810
Ppu21I	YACGTR	3 cut(s)	271, 355, 378
PsiI	TTATAA	1 cut(s)	93
PspCI	CACGTG	3 cut(s)	271, 355, 378
PspN4I	GGNNCC	3 cut(s)	561, 726, 906
PsuI	RGATCY	1 cut(s)	586
RruI	TCGCGA	1 cut(s)	413
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	84, 859
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	5 cut(s)	150, 275, 384, 735, 954
SatI	GCNGC	3 cut(s)	763, 825, 1015
Sau3AI	GATC	8 cut(s)	40, 234, 364, 408, 586, 747, 779, 873
SchI	GAGTC	3 cut(s)	147, 513, 811
ScrFI	CCNGG	2 cut(s)	794, 1002
SfaNI	GCATC	2 cut(s)	399, 821
SfuI	TTCGAA	2 cut(s)	56, 488
SgrAI	CRCCGGYG	1 cut(s)	700
SmiMI	CAYNNNNRTG	2 cut(s)	84, 859
Sse9I	AATT	2 cut(s)	344, 490
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	792, 1000
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	6 cut(s)	443, 644, 810, 861, 909, 978
TaqI	TCGA	7 cut(s)	12, 43, 56, 237, 393, 488, 707
TasI	AATT	2 cut(s)	344, 490
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	3 cut(s)	765, 827, 1017
TfiI	GAWTC	5 cut(s)	45, 332, 485, 610, 851
Tru1I	TTAA	5 cut(s)	150, 275, 384, 735, 954
Tru9I	TTAA	5 cut(s)	150, 275, 384, 735, 954
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	5 cut(s)	17, 95, 450, 635, 828
TspGWI	ACGGA	2 cut(s)	579, 717
TspRI	CASTG	1 cut(s)	37
XceI	RCATGY	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	714, 805
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	224
ZraI	GACGTC	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.