Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0020945

Physical Location & Seq

Genomic Coordinates Reverse (-)

53121377 .. 53122432

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1431200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGTGAACTTTGATTATGATGAGCTTGTGAACACAACAGGAAGCTTCTCTCCGACTCGGATGGTCGGCAAAGGCAGCCATGGAATGGTCTACAAGGCCATGCTACTCAACAAAACTGTTGCCCTAAAGAAGCCATTGCAACATCGTGACAACTACTCCAAGCTAGAAAACGAAATATGCGTGTTATCGTCTTTACCCGAGAACCGGCATGTTATAAGCCTTCTTGGAACAAGCCAAGATCACTCGAACGGCAACAACAAGCTCATTGTCATGGAGTTCATGCCCAATGGCTCTCTCCATGACCTACTTCATGTTGCAGCTACACCGCCTTCGTGGCCTAAACGTGTAGAAATCGCCATCCAAGTCGCCCGGGCGGTCCAATTTCTTCACGAAGGGAAGCCTACGGTAATCCACAGGGACATCAAGTCTGAAAATATTTTGTTCGATTCAGATTGGAATGCCAAGTTGGCGGATTTTGGACTTGCCGTGCTCTTTGATTCGCCGAGTCAGGTGAGTCAACCCGCTGCAGGAACTATTGGATATTTGGACCCTTGTTACACCACGCCTAGCAAATTAAGCACCAAAAGTGATATGTTTAGTTTTGGTGTTGTGTTGCTTGAGATCATTAGCTGCAGGAAAGTCATCGATGTTTCTAAGTCACCCGCTTCGATAGTGGACTGGGCAGTGGCATTAATCGAAGAAGAGCGAATCGACGAGATTTGTGATGCAAGGATAGGGTTTCCCGTATACATGTCAAGCACAATAAGGCACATTTTATATGTTGCAGCAAGTTGTGTATCGTCCAATGTAGAAAATCGTCTGACGATCGGAGAGATCGTTAGGGAGATGGAAAATTCTGTTATCGAACGAGTTAGGTTACCGATTTGGATCAATATGTTGAGGAACTTGGTACTCATGAGGAGGAAGAAAAAGTTGGCAAAAAAATGGCAGCAGGAAAAATGTGCAACAGTACTAGAACAAAGTGATGATGGTGTTCACGTCCCAAGTGGAAAGCTATTGCTGTGGCAGGTATTGGCTGATGCTGAAATGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

352

Amino Acids

39.33

Weight (kDa)

6.57

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 281	5.5e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 282	1.5e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23170
malus_domestica	MD08G1239700.v1.1 MD15G1431200.v1.1
prunus_persica	Prupe.1G576200_v2.0.a1
pyrus_communis	pycom08g20790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	1018
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	2 cut(s)	90, 747
AciI	CCGC	5 cut(s)	326, 374, 470, 522, 663
AclWI	GGATC	1 cut(s)	896
AcsI	RAATTY	1 cut(s)	853
AfaI	GTAC	2 cut(s)	912, 972
AfiI	CCNNNNNNNGG	3 cut(s)	85, 204, 527
AflIII	ACRYGT	2 cut(s)	343, 750
AhdI	GACNNNNNGTC	1 cut(s)	424
AjiI	CACGTC	1 cut(s)	1000
AjuI	GAANNNNNNNTTGG	4 cut(s)	449, 481, 917, 949
AluBI	AGCT	7 cut(s)	25, 45, 163, 262, 320, 630, 1015
AluI	AGCT	7 cut(s)	25, 45, 163, 262, 320, 630, 1015
Alw21I	GWGCWC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	896
Ama87I	CYCGRG	2 cut(s)	197, 369
AoxI	GGCC	2 cut(s)	96, 335
ApeKI	GCWGC	6 cut(s)	75, 317, 524, 630, 785, 949
ApoI	RAATTY	1 cut(s)	853
AseI	ATTAAT	1 cut(s)	692
AspS9I	GGNCC	2 cut(s)	376, 547
AsuC2I	CCSGG	2 cut(s)	370, 371
AsuHPI	GGTGA	3 cut(s)	16, 523, 651
AvaI	CYCGRG	2 cut(s)	197, 369
AvaII	GGWCC	2 cut(s)	376, 547
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	6 cut(s)	87, 329, 511, 617, 797, 961
BccI	CCATC	4 cut(s)	55, 365, 841, 983
BceAI	ACGGC	2 cut(s)	265, 470
BcnI	CCSGG	2 cut(s)	370, 371
BfaI	CTAG	3 cut(s)	164, 567, 974
BfmI	CTRYAG	2 cut(s)	525, 631
BfuAI	ACCTGC	1 cut(s)	1018
BglI	GCCNNNNNGGC	2 cut(s)	334, 467
BisI	GCNGC	6 cut(s)	76, 318, 525, 631, 786, 950
BlsI	GCNGC	6 cut(s)	77, 319, 526, 632, 787, 951
BmcAI	AGTACT	1 cut(s)	972
Bme1390I	CCNGG	2 cut(s)	370, 371
Bme18I	GGWCC	2 cut(s)	376, 547
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmeT110I	CYCGRG	2 cut(s)	197, 369
BmgBI	CACGTC	1 cut(s)	1000
BmgT120I	GGNCC	2 cut(s)	376, 547
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	370, 371
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	2 cut(s)	715, 1030
BmuI	ACTGGG	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	2 cut(s)	370, 371
Bsa29I	ATCGAT	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	887
BsaJI	CCNNGG	2 cut(s)	79, 369
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 822, 852
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 204, 527
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	887
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	79, 369
BseGI	GGATG	2 cut(s)	66, 357
BseJI	GATNNNNATC	1 cut(s)	887
BseLI	CCNNNNNNNGG	3 cut(s)	85, 204, 527
BseMI	GCAATG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	1 cut(s)	934
BseXI	GCAGC	6 cut(s)	87, 329, 511, 617, 797, 961
Bsh1285I	CGRYCG	1 cut(s)	828
BshFI	GGCC	2 cut(s)	98, 337
BshVI	ATCGAT	1 cut(s)	645
BsiEI	CGRYCG	1 cut(s)	828
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	2 cut(s)	197, 369
BsiSI	CCGG	2 cut(s)	205, 370
BslFI	GGGAC	2 cut(s)	431, 986
BslI	CCNNNNNNNGG	3 cut(s)	85, 204, 527
BsmFI	GGGAC	2 cut(s)	431, 986
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	98, 337
BsoBI	CYCGRG	2 cut(s)	197, 369
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	5 cut(s)	238, 621, 825, 834, 888
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	5 cut(s)	326, 374, 470, 522, 663
BspANI	GGCC	2 cut(s)	98, 337
BspDI	ATCGAT	1 cut(s)	645
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	1 cut(s)	549
BspMAI	CTGCAG	2 cut(s)	529, 635
BspMI	ACCTGC	1 cut(s)	1018
BspPI	GGATC	1 cut(s)	896
BspQI	GCTCTTC	1 cut(s)	696
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	683
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	79, 369
BssMI	GATC	5 cut(s)	238, 621, 825, 834, 888
BssNAI	GTATAC	1 cut(s)	748
BssT1I	CCWWGG	1 cut(s)	79
Bst1107I	GTATAC	1 cut(s)	748
Bst4CI	ACNGT	3 cut(s)	118, 406, 970
Bst6I	CTCTTC	1 cut(s)	696
BstDEI	CTNAG	1 cut(s)	654
BstDSI	CCRYGG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	876
BstF5I	GGATG	2 cut(s)	66, 357
BstKTI	GATC	5 cut(s)	241, 624, 828, 837, 891
BstMBI	GATC	5 cut(s)	238, 621, 825, 834, 888
BstMCI	CGRYCG	1 cut(s)	828
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 334, 467, 576
BstNSI	RCATGY	2 cut(s)	212, 754
BstPI	GGTNACC	1 cut(s)	876
BstSCI	CCNGG	2 cut(s)	368, 369
BstSFI	CTRYAG	2 cut(s)	525, 631
BstV1I	GCAGC	6 cut(s)	87, 329, 511, 617, 797, 961
BstZ17I	GTATAC	1 cut(s)	748
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	98, 337
BsuTUI	ATCGAT	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	1000
BtsCI	GGATG	2 cut(s)	66, 357
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	690
BveI	ACCTGC	1 cut(s)	1018
CciI	TCATGA	1 cut(s)	915
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	376, 547
Cfr9I	CCCGGG	1 cut(s)	369
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	2 cut(s)	911, 971
CviAII	CATG	9 cut(s)	80, 100, 209, 271, 280, 299, 311, 751, 916
CviQI	GTAC	2 cut(s)	911, 971
DdeI	CTNAG	1 cut(s)	654
DpnI	GATC	5 cut(s)	240, 623, 827, 836, 890
DpnII	GATC	5 cut(s)	238, 621, 825, 834, 888
DriI	GACNNNNNGTC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	696
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	696
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	376, 547
Eco88I	CYCGRG	2 cut(s)	197, 369
Eco91I	GGTNACC	1 cut(s)	876
EcoO65I	GGTNACC	1 cut(s)	876
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	9 cut(s)	83, 103, 212, 274, 283, 302, 314, 754, 919
FaqI	GGGAC	2 cut(s)	431, 986
FatI	CATG	9 cut(s)	79, 99, 208, 270, 279, 298, 310, 750, 915
FauI	CCCGC	2 cut(s)	529, 670
FblI	GTMKAC	2 cut(s)	90, 747
Fnu4HI	GCNGC	6 cut(s)	76, 318, 525, 631, 786, 950
FokI	GGATG	2 cut(s)	73, 344
Fsp4HI	GCNGC	6 cut(s)	76, 318, 525, 631, 786, 950
FspBI	CTAG	3 cut(s)	164, 567, 974
GluI	GCNGC	6 cut(s)	76, 318, 525, 631, 786, 950
HaeIII	GGCC	2 cut(s)	98, 337
HapII	CCGG	2 cut(s)	205, 370
Hin1II	CATG	9 cut(s)	83, 103, 212, 274, 283, 302, 314, 754, 919
HincII	GTYRAC	1 cut(s)	518
HindII	GTYRAC	1 cut(s)	518
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	6 cut(s)	55, 446, 497, 505, 514, 708
HpaII	CCGG	2 cut(s)	205, 370
HphI	GGTGA	3 cut(s)	16, 523, 651
Hpy166II	GTNNAC	7 cut(s)	7, 31, 91, 518, 676, 748, 997
Hpy188I	TCNGA	6 cut(s)	54, 60, 430, 451, 822, 830
Hpy188III	TCNNGA	3 cut(s)	146, 389, 916
Hpy8I	GTNNAC	7 cut(s)	7, 31, 91, 518, 676, 748, 997
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	3 cut(s)	230, 339, 386
HpyCH4III	ACNGT	3 cut(s)	118, 406, 970
HpyCH4IV	ACGT	2 cut(s)	343, 999
HpyCH4V	TGCA	7 cut(s)	139, 317, 527, 633, 728, 785, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 334, 467, 576
HpyF3I	CTNAG	1 cut(s)	654
HpySE526I	ACGT	2 cut(s)	343, 999
Hsp92II	CATG	9 cut(s)	83, 103, 212, 274, 283, 302, 314, 754, 919
Kzo9I	GATC	5 cut(s)	238, 621, 825, 834, 888
LguI	GCTCTTC	1 cut(s)	696
Lsp1109I	GCAGC	6 cut(s)	87, 329, 511, 617, 797, 961
LweI	GCATC	2 cut(s)	715, 1030
MaeI	CTAG	3 cut(s)	164, 567, 974
MaeII	ACGT	2 cut(s)	343, 999
MaeIII	GTNAC	4 cut(s)	146, 554, 657, 876
MalI	GATC	5 cut(s)	240, 623, 827, 836, 890
MboI	GATC	5 cut(s)	238, 621, 825, 834, 888
MboII	GAAGA	4 cut(s)	377, 710, 713, 937
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	3 cut(s)	380, 572, 853
MlyI	GAGTC	3 cut(s)	49, 514, 523
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	894, 912, 915
MseI	TTAA	2 cut(s)	575, 692
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	2 cut(s)	205, 370
MspR9I	CCNGG	2 cut(s)	370, 371
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	4 cut(s)	75, 334, 467, 576
NciI	CCSGG	2 cut(s)	370, 371
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	5 cut(s)	238, 621, 825, 834, 888
NlaIII	CATG	9 cut(s)	83, 103, 212, 274, 283, 302, 314, 754, 919
NlaIV	GGNNCC	1 cut(s)	549
NmeAIII	GCCGAG	1 cut(s)	528
NmuCI	GTSAC	2 cut(s)	146, 657
NspI	RCATGY	2 cut(s)	212, 754
PagI	TCATGA	1 cut(s)	915
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 834
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	446, 497, 708
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	6 cut(s)	77, 319, 526, 632, 787, 951
Ple19I	CGATCG	1 cut(s)	828
PleI	GAGTC	3 cut(s)	49, 513, 522
PpsI	GAGTC	3 cut(s)	49, 513, 522
PscI	ACATGT	1 cut(s)	750
PshBI	ATTAAT	1 cut(s)	692
PsiI	TTATAA	1 cut(s)	215
PspEI	GGTNACC	1 cut(s)	876
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	2 cut(s)	376, 547
PstI	CTGCAG	2 cut(s)	529, 635
PvuI	CGATCG	1 cut(s)	828
RsaI	GTAC	2 cut(s)	912, 972
RsaNI	GTAC	2 cut(s)	911, 971
RseI	CAYNNNNRTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	575, 692
SatI	GCNGC	6 cut(s)	76, 318, 525, 631, 786, 950
Sau3AI	GATC	5 cut(s)	238, 621, 825, 834, 888
Sau96I	GGNCC	2 cut(s)	376, 547
ScaI	AGTACT	1 cut(s)	972
SchI	GAGTC	3 cut(s)	49, 514, 523
ScrFI	CCNGG	2 cut(s)	370, 371
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	715, 1030
SfcI	CTRYAG	2 cut(s)	525, 631
SinI	GGWCC	2 cut(s)	376, 547
SmaI	CCCGGG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SrfI	GCCCGGGC	1 cut(s)	371
Sse9I	AATT	3 cut(s)	380, 572, 853
SsiI	CCGC	5 cut(s)	326, 374, 470, 522, 663
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	3 cut(s)	164, 567, 974
StyD4I	CCNGG	2 cut(s)	368, 369
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	118, 406, 970
TaiI	ACGT	2 cut(s)	346, 1002
TaqI	TCGA	7 cut(s)	245, 444, 645, 668, 696, 711, 864
TasI	AATT	3 cut(s)	380, 572, 853
TatI	WGTACW	1 cut(s)	970
TfiI	GAWTC	3 cut(s)	446, 497, 708
Tru1I	TTAA	2 cut(s)	575, 692
Tru9I	TTAA	2 cut(s)	575, 692
TscAI	CASTG	1 cut(s)	690
TseFI	GTSAC	2 cut(s)	146, 657
TseI	GCWGC	6 cut(s)	75, 317, 524, 630, 785, 949
Tsp45I	GTSAC	2 cut(s)	146, 657
TspDTI	ATGAA	2 cut(s)	268, 299
TspMI	CCCGGG	1 cut(s)	369
TspRI	CASTG	1 cut(s)	690
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	376, 547
VspI	ATTAAT	1 cut(s)	692
XapI	RAATTY	1 cut(s)	853
XceI	RCATGY	2 cut(s)	212, 754
XmaI	CCCGGG	1 cut(s)	369
XmiI	GTMKAC	2 cut(s)	90, 747
XspI	CTAG	3 cut(s)	164, 567, 974
ZrmI	AGTACT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.