Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0020945

Physical Location & Seq

Genomic Coordinates Reverse (-)

30614529 .. 30615587

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1239700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTGGGCTTTGATTATGATGAGCTTGTAAACGCAACAGGAAGCTTCTCTCCGACTCGGCTCGTCGGTAAAGGTAGCCATGGAATGGTCTACAAAGCCATGCTACTCAACAAAATGGTTGCCCTAAAGAAGCCATTGCAACATCGTGACAACCACTACAAGCTCGAAAATGAAATATGTGTGTTATCGTCTCTACCCAAAAACCAGCATGTTATAAGCCTTCTTGGAACGAGCCAAGATCACTCGAACAACAACAAGCTCATTGTCATGGAGTTCATGCCCAATGGCTCTCTCCATGACCTACTTCATCTTGCACCTACACCGCCACCGTGGCCTAAACGTGTAGAAATCTTCATCCAAGTCGCCCGCGCGGTCCAATTTCTTCACGAAGGGAAGCCTACGGTGATCCACAGGGACATCAAGTCTGAAAATATTTTGTTCGATTCAGATTGGAATGCCAAGTTGGCGGATTTTGGACTTGCCGTGCTCTTTGACTCGCCGAGTCAGGTGAGTCCACCCGCTGCAGGTACTATTGGATACTTGGACCCTTGTTACACCACTCCTAGCAAACTAAGTACCAAGAACGATGTGTTTAGTTTTGGTGTTGTGTTGCTTGAGATTATTAGCTGCAGGAAAGTCATCGATGTTTCTAAGTCACCAGCTTCGATAGTGGATTGGGCAGTAGCATTGATCGAAGAAGAACGAATTGACGAGATTTGTGATGCAAGGATAGGGCTTCCGATGGACATGTCAAGCACAATAAGGCACATTTTATATGTTGCAGCGAGTTGTGTATCGTCCAACGTAGAAAATCGTCCGACGATCGGAGGGATTGTTACGGAGATGGAAAACTGTGTTATCGAGCGAGTTAGGCTACCGATTTGGATTAGTATGTGGAGGAACTTGGTGAGGAGGAAGAAAAAAGATATAGCTAAAAAATGGCAGCAGGAAAAATGTGCAACAGTACTAGAACAAAGTGATGATGGTGTTCTTGGTGATCATGTCTCAAGTGGGAAGCTGTTGCTGTGGCAGGTTTTGGCTGATGCTGGAAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

353

Amino Acids

39.25

Weight (kDa)

6.6

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 278	7.7e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 281	1.2e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23170
malus_domestica	MD08G1239700.v1.1 MD15G1431200.v1.1
prunus_persica	Prupe.1G576200_v2.0.a1
pyrus_communis	pycom08g20790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
Acc36I	ACCTGC	2 cut(s)	515, 1021
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	369, 371
AciI	CCGC	5 cut(s)	323, 367, 371, 467, 519
AclWI	GGATC	1 cut(s)	400
AfaI	GTAC	3 cut(s)	529, 577, 966
AfiI	CCNNNNNNNGG	3 cut(s)	85, 524, 824
AflIII	ACRYGT	2 cut(s)	340, 747
AhdI	GACNNNNNGTC	1 cut(s)	421
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	8 cut(s)	25, 45, 163, 259, 627, 662, 932, 1018
AluI	AGCT	8 cut(s)	25, 45, 163, 259, 627, 662, 932, 1018
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	195, 1009
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	4 cut(s)	521, 627, 782, 943
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	373, 544
AsuHPI	GGTGA	5 cut(s)	415, 520, 648, 919, 1007
AvaII	GGWCC	2 cut(s)	373, 544
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	508, 614, 794, 955
BccI	CCATC	3 cut(s)	736, 838, 977
BceAI	ACGGC	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	997
BcoDI	GTCTC	2 cut(s)	195, 1009
BfaI	CTAG	2 cut(s)	564, 968
BfmI	CTRYAG	2 cut(s)	522, 628
BfuAI	ACCTGC	2 cut(s)	515, 1021
BfuI	GTATCC	1 cut(s)	530
BglI	GCCNNNNNGGC	2 cut(s)	331, 464
BisI	GCNGC	4 cut(s)	522, 628, 783, 944
BlsI	GCNGC	4 cut(s)	523, 629, 784, 945
BmcAI	AGTACT	1 cut(s)	966
Bme18I	GGWCC	2 cut(s)	373, 544
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	373, 544
BmiI	GGNNCC	1 cut(s)	546
BmsI	GCATC	2 cut(s)	712, 1033
BpuEI	CTTGAG	2 cut(s)	635, 991
Bsa29I	ATCGAT	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	79, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 524, 824
Bse3DI	GCAATG	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	79, 329
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	85, 524, 824
BseMI	GCAATG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	925
BseXI	GCAGC	4 cut(s)	508, 614, 794, 955
Bsh1236I	CGCG	2 cut(s)	369, 371
Bsh1285I	CGRYCG	1 cut(s)	825
BshFI	GGCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	642
BsiEI	CGRYCG	1 cut(s)	825
BsiHKAI	GWGCWC	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	3 cut(s)	85, 524, 824
BsmAI	GTCTC	2 cut(s)	195, 1009
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	238, 405, 690, 822, 997
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	5 cut(s)	323, 367, 371, 467, 519
BspANI	GGCC	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	642
BspFNI	CGCG	2 cut(s)	369, 371
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	2 cut(s)	526, 632
BspMI	ACCTGC	2 cut(s)	515, 1021
BspPI	GGATC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	79, 329
BssMI	GATC	5 cut(s)	238, 405, 690, 822, 997
BssT1I	CCWWGG	1 cut(s)	79
Bst4CI	ACNGT	4 cut(s)	330, 403, 854, 964
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	572, 651
BstDSI	CCRYGG	2 cut(s)	79, 329
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	2 cut(s)	369, 371
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	5 cut(s)	241, 408, 693, 825, 1000
BstMAI	GTCTC	2 cut(s)	195, 1009
BstMBI	GATC	5 cut(s)	238, 405, 690, 822, 997
BstMCI	CGRYCG	1 cut(s)	825
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 464, 871
BstNSI	RCATGY	2 cut(s)	212, 751
BstSFI	CTRYAG	2 cut(s)	522, 628
BstUI	CGCG	2 cut(s)	369, 371
BstV1I	GCAGC	4 cut(s)	508, 614, 794, 955
Bsu15I	ATCGAT	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	334
BsuTUI	ATCGAT	1 cut(s)	642
BtgI	CCRYGG	2 cut(s)	79, 329
BtsCI	GGATG	1 cut(s)	354
BveI	ACCTGC	2 cut(s)	515, 1021
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	373, 544
ClaI	ATCGAT	1 cut(s)	642
Csp6I	GTAC	3 cut(s)	528, 576, 965
CviAII	CATG	8 cut(s)	80, 100, 209, 268, 277, 296, 748, 1001
CviQI	GTAC	3 cut(s)	528, 576, 965
DdeI	CTNAG	2 cut(s)	572, 651
DpnI	GATC	5 cut(s)	240, 407, 692, 824, 999
DpnII	GATC	5 cut(s)	238, 405, 690, 822, 997
DriI	GACNNNNNGTC	1 cut(s)	421
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	373, 544
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	8 cut(s)	83, 103, 212, 271, 280, 299, 751, 1004
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	8 cut(s)	79, 99, 208, 267, 276, 295, 747, 1000
FauI	CCCGC	2 cut(s)	374, 526
FbaI	TGATCA	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	522, 628, 783, 944
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	4 cut(s)	522, 628, 783, 944
FspBI	CTAG	2 cut(s)	564, 968
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	4 cut(s)	522, 628, 783, 944
HaeIII	GGCC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	8 cut(s)	83, 103, 212, 271, 280, 299, 751, 1004
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	5 cut(s)	55, 443, 494, 502, 511
HphI	GGTGA	5 cut(s)	415, 520, 648, 919, 1007
Hpy166II	GTNNAC	3 cut(s)	31, 91, 515
Hpy188I	TCNGA	6 cut(s)	54, 427, 448, 741, 819, 827
Hpy188III	TCNNGA	2 cut(s)	146, 386
Hpy8I	GTNNAC	3 cut(s)	31, 91, 515
Hpy99I	CGWCG	2 cut(s)	68, 823
HpyAV	CCTTC	2 cut(s)	230, 383
HpyCH4III	ACNGT	4 cut(s)	330, 403, 854, 964
HpyCH4IV	ACGT	2 cut(s)	340, 804
HpyCH4V	TGCA	7 cut(s)	139, 314, 524, 630, 725, 782, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 464, 871
HpyF3I	CTNAG	2 cut(s)	572, 651
HpySE526I	ACGT	2 cut(s)	340, 804
Hsp92II	CATG	8 cut(s)	83, 103, 212, 271, 280, 299, 751, 1004
HspAI	GCGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	5 cut(s)	238, 405, 690, 822, 997
Lsp1109I	GCAGC	4 cut(s)	508, 614, 794, 955
LweI	GCATC	2 cut(s)	712, 1033
MaeI	CTAG	2 cut(s)	564, 968
MaeII	ACGT	2 cut(s)	340, 804
MaeIII	GTNAC	4 cut(s)	146, 551, 654, 835
MalI	GATC	5 cut(s)	240, 407, 692, 824, 999
MboI	GATC	5 cut(s)	238, 405, 690, 822, 997
MboII	GAAGA	5 cut(s)	343, 374, 707, 710, 928
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	2 cut(s)	377, 705
MlyI	GAGTC	4 cut(s)	49, 488, 511, 520
MmeI	TCCRAC	3 cut(s)	77, 825, 842
MnlI	CCTC	4 cut(s)	821, 891, 903, 906
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	460
MvnI	CGCG	2 cut(s)	369, 371
MwoI	GCNNNNNNNGC	3 cut(s)	331, 464, 871
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	5 cut(s)	238, 405, 690, 822, 997
NlaIII	CATG	8 cut(s)	83, 103, 212, 271, 280, 299, 751, 1004
NlaIV	GGNNCC	1 cut(s)	546
NmeAIII	GCCGAG	2 cut(s)	37, 525
NmuCI	GTSAC	2 cut(s)	146, 654
NspI	RCATGY	2 cut(s)	212, 751
PciI	ACATGT	1 cut(s)	747
PctI	GAATGC	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	523, 629, 784, 945
Ple19I	CGATCG	1 cut(s)	825
PleI	GAGTC	4 cut(s)	49, 488, 510, 519
PpsI	GAGTC	4 cut(s)	49, 488, 510, 519
PscI	ACATGT	1 cut(s)	747
PsiI	TTATAA	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	2 cut(s)	373, 544
PstI	CTGCAG	2 cut(s)	526, 632
PvuI	CGATCG	1 cut(s)	825
RsaI	GTAC	3 cut(s)	529, 577, 966
RsaNI	GTAC	3 cut(s)	528, 576, 965
RseI	CAYNNNNRTG	1 cut(s)	266
SatI	GCNGC	4 cut(s)	522, 628, 783, 944
Sau3AI	GATC	5 cut(s)	238, 405, 690, 822, 997
Sau96I	GGNCC	2 cut(s)	373, 544
ScaI	AGTACT	1 cut(s)	966
SchI	GAGTC	4 cut(s)	49, 488, 511, 520
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	712, 1033
SfcI	CTRYAG	2 cut(s)	522, 628
SinI	GGWCC	2 cut(s)	373, 544
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	614, 1006
SmoI	CTYRAG	2 cut(s)	614, 1006
Sse9I	AATT	2 cut(s)	377, 705
SsiI	CCGC	5 cut(s)	323, 367, 371, 467, 519
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	564, 968
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	4 cut(s)	330, 403, 854, 964
TaiI	ACGT	2 cut(s)	343, 807
TaqI	TCGA	7 cut(s)	165, 245, 441, 642, 665, 693, 861
TasI	AATT	2 cut(s)	377, 705
TatI	WGTACW	1 cut(s)	964
TfiI	GAWTC	1 cut(s)	443
TseFI	GTSAC	2 cut(s)	146, 654
TseI	GCWGC	4 cut(s)	521, 627, 782, 943
Tsp45I	GTSAC	2 cut(s)	146, 654
TspDTI	ATGAA	4 cut(s)	186, 265, 296, 343
TspGWI	ACGGA	1 cut(s)	854
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	373, 544
XceI	RCATGY	2 cut(s)	212, 751
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	564, 968
ZrmI	AGTACT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.