Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0020945

Physical Location & Seq

Genomic Coordinates Reverse (-)

20443117 .. 20444499

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGTGGGCTTTGATTATGATGAGCTTGTAAACGCAACAGGAAGCTTCTCTCCGACTCGGCTCGTCGGTAAAGGTAGCCATGGAATGGTCTACAAAGCCATGCTACTCAACAAAATGGTTGCCCTAAAGAAGCCATTGCAACATCGTGACAACCACTACAAGCTCGAAAATGAAATATGTGTGTTATCGTCTCTACCCAAAAACCAGCATGTTATAAGCCTTCTTGGAACGAGCCAAGATCACTCGAACAAAAACAAGCTCATTGTCATGGAGTTCATGCCCAATGGCTCTCTCCATGACCTACTTCATCTTGCACCTACACCGCCACCCTGGCCTAAACGTGTGGAAATCGCCATCCAAGTCGCCCGCGCGGTCCAATTTCTTCATGAAGGGAAGCCTACAGTGATCCACAGAGATATCAAGTCTGAAAATATTTTGTTCGATTCAGATTGGCATGCCAAGTTGGCTGATTTTGGACTTGCCGTCCTATTTGACTCGCCGAGTCAGGTGAGTCCACCTGCTGCAGGTACTATTGGATACTTGGACCCTTGTTACACCACTCCTAGCAAACTAAGTACCAAAAACGATGTGTTTAGTTTTGGTGTTGTGTTGCTTGAGATTATTAGCTGCAGGAAAGTCATCGATATTTCTAAGTCACCAGCTTCGATAGTGGATTGGGCAGTAGCATTGATCGAAGAAGAACGAATCGACGAGATTTGTGATGCAAGGATAGGGCTTCCGATGGACATGTCAAACACAATAAGGCACATTTTATACGTTGCAGCGAGCTGTGTATCGTCCAACGTAGACAATCGTCCGACGATCGGAGAGATTGTTACGGAGATGGAAAACTGTGTTATCGAGCGAGTTAGGCTACCGATTTGGATTAGTATGTTGAGGAACTTGGTGAGGAGGAAGAAAAAAGATATAGCTAAAAAATGGCAGCAGGAAAAATGTGTAACAGTACTAGAACAAAGTGATGATGGTGTTCTTGGTGATCATGTCTCAAGTGGGAAGCTGTTGCTGTGGCAGTTGGAAGCAGCCTGCGGGCCTTTGCCTTTCCATGTAAGTGTCTGTGTGTGTGTGTGTATATATATATATATTATATTAGGTGTTTTAGAAAAACCTACCGGGCATGCAGTCCAAATAGAAGATTCCCAAATATTAGGTGGGCAGAGAATATCACGACGTTCGTGTCTATGTGCGTGTCATTCCAGGCTGATGGCACTGCTAGCTCTTCTTTTATTTTTATCCATTCTTTTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

423

Amino Acids

46.99

Weight (kDa)

7.56

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 280	7.6e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 281	1.2e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23170
malus_domestica	MD08G1239700.v1.1 MD15G1431200.v1.1
prunus_persica	Prupe.1G576200_v2.0.a1
pyrus_communis	pycom08g20790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AarI	CACCTGC	1 cut(s)	526
AasI	GACNNNNNNGTC	1 cut(s)	1194
Acc36I	ACCTGC	2 cut(s)	515, 526
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	2 cut(s)	90, 807
AccII	CGCG	2 cut(s)	369, 371
AciI	CCGC	4 cut(s)	323, 367, 371, 1047
AclWI	GGATC	1 cut(s)	400
AfaI	GTAC	3 cut(s)	529, 577, 966
AfiI	CCNNNNNNNGG	3 cut(s)	85, 524, 824
AflIII	ACRYGT	2 cut(s)	340, 747
AgsI	TTSAA	1 cut(s)	1264
AhdI	GACNNNNNGTC	1 cut(s)	482
AjnI	CCWGG	2 cut(s)	329, 1214
Alw26I	GTCTC	2 cut(s)	195, 1009
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	2 cut(s)	332, 1049
ApeKI	GCWGC	5 cut(s)	521, 627, 782, 943, 1040
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	3 cut(s)	373, 544, 1049
AsuC2I	CCSGG	1 cut(s)	1132
AsuHPI	GGTGA	4 cut(s)	520, 648, 919, 1007
AsuNHI	GCTAGC	1 cut(s)	1231
AvaII	GGWCC	2 cut(s)	373, 544
BbvI	GCAGC	5 cut(s)	508, 614, 794, 955, 1052
BccI	CCATC	5 cut(s)	362, 736, 838, 977, 1216
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	331, 1216
BciVI	GTATCC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	997
BcnI	CCSGG	1 cut(s)	1132
BcoDI	GTCTC	2 cut(s)	195, 1009
BfaI	CTAG	3 cut(s)	564, 968, 1232
BfmI	CTRYAG	3 cut(s)	399, 522, 628
BfuAI	ACCTGC	2 cut(s)	515, 526
BfuI	GTATCC	1 cut(s)	530
BglI	GCCNNNNNGGC	2 cut(s)	331, 464
BisI	GCNGC	5 cut(s)	522, 628, 783, 944, 1041
BlsI	GCNGC	5 cut(s)	523, 629, 784, 945, 1042
BmcAI	AGTACT	1 cut(s)	966
Bme1390I	CCNGG	3 cut(s)	331, 1132, 1216
Bme18I	GGWCC	2 cut(s)	373, 544
BmeRI	GACNNNNNGTC	1 cut(s)	482
BmgT120I	GGNCC	3 cut(s)	373, 544, 1049
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	3 cut(s)	331, 1132, 1216
BmsI	GCATC	1 cut(s)	712
BmtI	GCTAGC	1 cut(s)	1235
BoxI	GACNNNNGTC	1 cut(s)	813
BpuEI	CTTGAG	2 cut(s)	635, 991
BpuMI	CCSGG	1 cut(s)	1132
Bsa29I	ATCGAT	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	79, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 524, 824
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	331, 1216
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	79, 329
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	85, 524, 824
BseMI	GCAATG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	925
BseXI	GCAGC	5 cut(s)	508, 614, 794, 955, 1052
Bsh1236I	CGCG	2 cut(s)	369, 371
Bsh1285I	CGRYCG	1 cut(s)	825
BshFI	GGCC	2 cut(s)	334, 1051
BshVI	ATCGAT	1 cut(s)	642
BsiEI	CGRYCG	1 cut(s)	825
BsiSI	CCGG	1 cut(s)	1131
BslI	CCNNNNNNNGG	3 cut(s)	85, 524, 824
BsmAI	GTCTC	2 cut(s)	195, 1009
BsmBI	CGTCTC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	334, 1051
Bsp143I	GATC	5 cut(s)	238, 405, 690, 822, 997
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	4 cut(s)	323, 367, 371, 1047
BspANI	GGCC	2 cut(s)	334, 1051
BspDI	ATCGAT	1 cut(s)	642
BspFNI	CGCG	2 cut(s)	369, 371
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	2 cut(s)	526, 632
BspMI	ACCTGC	2 cut(s)	515, 526
BspOI	GCTAGC	1 cut(s)	1235
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	1242
BsrDI	GCAATG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	79, 329
BssMI	GATC	5 cut(s)	238, 405, 690, 822, 997
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	331, 1216
Bst4CI	ACNGT	3 cut(s)	403, 854, 964
Bst6I	CTCTTC	1 cut(s)	1242
BstC8I	GCNNGC	7 cut(s)	367, 456, 787, 1045, 1049, 1137, 1233
BstDEI	CTNAG	2 cut(s)	572, 651
BstDSI	CCRYGG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	2 cut(s)	369, 371
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	5 cut(s)	241, 408, 693, 825, 1000
BstMAI	GTCTC	2 cut(s)	195, 1009
BstMBI	GATC	5 cut(s)	238, 405, 690, 822, 997
BstMCI	CGRYCG	1 cut(s)	825
BstMWI	GCNNNNNNNGC	4 cut(s)	331, 464, 871, 1232
BstNI	CCWGG	2 cut(s)	331, 1216
BstNSI	RCATGY	4 cut(s)	212, 458, 751, 1139
BstPAI	GACNNNNGTC	1 cut(s)	813
BstSCI	CCNGG	3 cut(s)	329, 1130, 1214
BstSFI	CTRYAG	3 cut(s)	399, 522, 628
BstUI	CGCG	2 cut(s)	369, 371
BstV1I	GCAGC	5 cut(s)	508, 614, 794, 955, 1052
BstXI	CCANNNNNNTGG	1 cut(s)	1222
Bsu15I	ATCGAT	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	334, 1051
BsuTUI	ATCGAT	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	1226
BtsIMutI	CAGTG	2 cut(s)	408, 1226
BveI	ACCTGC	2 cut(s)	515, 526
Cac8I	GCNNGC	7 cut(s)	367, 456, 787, 1045, 1049, 1137, 1233
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	3 cut(s)	373, 544, 1049
ClaI	ATCGAT	1 cut(s)	642
Csp6I	GTAC	3 cut(s)	528, 576, 965
CviQI	GTAC	3 cut(s)	528, 576, 965
DdeI	CTNAG	2 cut(s)	572, 651
DpnI	GATC	5 cut(s)	240, 407, 692, 824, 999
DpnII	GATC	5 cut(s)	238, 405, 690, 822, 997
DrdI	GACNNNNNNGTC	1 cut(s)	1194
DriI	GACNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	1194
Eam1104I	CTCTTC	1 cut(s)	1242
Eam1105I	GACNNNNNGTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	1242
Eco130I	CCWWGG	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	373, 544
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoRII	CCWGG	2 cut(s)	329, 1214
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	195
FauI	CCCGC	2 cut(s)	374, 1040
FbaI	TGATCA	1 cut(s)	997
FblI	GTMKAC	2 cut(s)	90, 807
Fnu4HI	GCNGC	5 cut(s)	522, 628, 783, 944, 1041
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	5 cut(s)	522, 628, 783, 944, 1041
FspBI	CTAG	3 cut(s)	564, 968, 1232
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	5 cut(s)	522, 628, 783, 944, 1041
HaeIII	GGCC	2 cut(s)	334, 1051
HapII	CCGG	1 cut(s)	1131
HhaI	GCGC	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	7 cut(s)	55, 443, 494, 502, 511, 705, 1154
HpaII	CCGG	1 cut(s)	1131
HphI	GGTGA	4 cut(s)	520, 648, 919, 1007
Hpy166II	GTNNAC	4 cut(s)	31, 91, 515, 808
Hpy188I	TCNGA	6 cut(s)	54, 427, 448, 741, 819, 827
Hpy188III	TCNNGA	3 cut(s)	146, 386, 1185
Hpy8I	GTNNAC	4 cut(s)	31, 91, 515, 808
Hpy99I	CGWCG	4 cut(s)	68, 713, 823, 1191
HpyAV	CCTTC	2 cut(s)	230, 383
HpyCH4III	ACNGT	3 cut(s)	403, 854, 964
HpyCH4IV	ACGT	4 cut(s)	340, 777, 804, 1189
HpyCH4V	TGCA	7 cut(s)	139, 314, 524, 630, 725, 782, 1139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	331, 464, 871, 1232
HpyF3I	CTNAG	2 cut(s)	572, 651
HpySE526I	ACGT	4 cut(s)	340, 777, 804, 1189
HspAI	GCGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	5 cut(s)	238, 405, 690, 822, 997
LguI	GCTCTTC	1 cut(s)	1242
Lsp1109I	GCAGC	5 cut(s)	508, 614, 794, 955, 1052
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	3 cut(s)	564, 968, 1232
MaeII	ACGT	4 cut(s)	340, 777, 804, 1189
MaeIII	GTNAC	5 cut(s)	146, 551, 654, 835, 958
MalI	GATC	5 cut(s)	240, 407, 692, 824, 999
MboI	GATC	5 cut(s)	238, 405, 690, 822, 997
MboII	GAAGA	6 cut(s)	374, 707, 710, 928, 1163, 1229
MluCI	AATT	1 cut(s)	377
MlyI	GAGTC	4 cut(s)	49, 488, 511, 520
MmeI	TCCRAC	4 cut(s)	77, 825, 842, 1014
MnlI	CCTC	3 cut(s)	891, 903, 906
MslI	CAYNNNNRTG	2 cut(s)	266, 1068
MspI	CCGG	1 cut(s)	1131
MspR9I	CCNGG	3 cut(s)	331, 1132, 1216
MvaI	CCWGG	2 cut(s)	331, 1216
MvnI	CGCG	2 cut(s)	369, 371
MwoI	GCNNNNNNNGC	4 cut(s)	331, 464, 871, 1232
NciI	CCSGG	1 cut(s)	1132
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	5 cut(s)	238, 405, 690, 822, 997
NheI	GCTAGC	1 cut(s)	1231
NlaIV	GGNNCC	1 cut(s)	546
NmeAIII	GCCGAG	2 cut(s)	37, 525
NmuCI	GTSAC	2 cut(s)	146, 654
NspI	RCATGY	4 cut(s)	212, 458, 751, 1139
PaeI	GCATGC	2 cut(s)	458, 1139
PagI	TCATGA	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	526
PciI	ACATGT	1 cut(s)	747
PciSI	GCTCTTC	1 cut(s)	1242
PfeI	GAWTC	3 cut(s)	443, 705, 1154
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	5 cut(s)	523, 629, 784, 945, 1042
Ple19I	CGATCG	1 cut(s)	825
PleI	GAGTC	4 cut(s)	49, 488, 510, 519
PpsI	GAGTC	4 cut(s)	49, 488, 510, 519
PscI	ACATGT	1 cut(s)	747
PshAI	GACNNNNGTC	1 cut(s)	813
PsiI	TTATAA	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	329, 1214
PspGI	CCWGG	2 cut(s)	329, 1214
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	3 cut(s)	373, 544, 1049
PstI	CTGCAG	2 cut(s)	526, 632
PvuI	CGATCG	1 cut(s)	825
RsaI	GTAC	3 cut(s)	529, 577, 966
RsaNI	GTAC	3 cut(s)	528, 576, 965
RseI	CAYNNNNRTG	2 cut(s)	266, 1068
SapI	GCTCTTC	1 cut(s)	1242
SatI	GCNGC	5 cut(s)	522, 628, 783, 944, 1041
Sau3AI	GATC	5 cut(s)	238, 405, 690, 822, 997
Sau96I	GGNCC	3 cut(s)	373, 544, 1049
ScaI	AGTACT	1 cut(s)	966
SchI	GAGTC	4 cut(s)	49, 488, 511, 520
ScrFI	CCNGG	3 cut(s)	331, 1132, 1216
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	3 cut(s)	399, 522, 628
SinI	GGWCC	2 cut(s)	373, 544
SmiMI	CAYNNNNRTG	2 cut(s)	266, 1068
SmlI	CTYRAG	2 cut(s)	614, 1006
SmoI	CTYRAG	2 cut(s)	614, 1006
SphI	GCATGC	2 cut(s)	458, 1139
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	4 cut(s)	323, 367, 371, 1047
SspI	AATATT	2 cut(s)	433, 1164
SspMI	CTAG	3 cut(s)	564, 968, 1232
StyD4I	CCNGG	3 cut(s)	329, 1130, 1214
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	403, 854, 964
TaiI	ACGT	4 cut(s)	343, 780, 807, 1192
TaqI	TCGA	8 cut(s)	165, 245, 441, 642, 665, 693, 708, 861
TasI	AATT	1 cut(s)	377
TatI	WGTACW	1 cut(s)	964
TfiI	GAWTC	3 cut(s)	443, 705, 1154
TscAI	CASTG	2 cut(s)	408, 1233
TseFI	GTSAC	2 cut(s)	146, 654
TseI	GCWGC	5 cut(s)	521, 627, 782, 943, 1040
Tsp45I	GTSAC	2 cut(s)	146, 654
TspDTI	ATGAA	5 cut(s)	186, 265, 296, 374, 402
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	2 cut(s)	408, 1233
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	373, 544
XagI	CCTNNNNNAGG	1 cut(s)	522
XceI	RCATGY	4 cut(s)	212, 458, 751, 1139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1166
XmiI	GTMKAC	2 cut(s)	90, 807
XspI	CTAG	3 cut(s)	564, 968, 1232
ZrmI	AGTACT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.