Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013787

Physical Location & Seq

Genomic Coordinates Reverse (-)

7950202 .. 7952619

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGCGAACAAACCAAGAACCAGATGGGTTCTTCCTTACAAGACCAAAAACGTTGAAGACAATTACTTTCTTGGTCAAGTCCTTGGACAAGGCCAATTCGGAACCACTTTCCTCTGTACCCATAAACAGACAGGTCAAAAGCTTGCCTGCAAATCCATACCCAAAAGGAAGCTCCTTTGTCAAGAAGATTACGACGACGTTCTGAGAGAGATCCAGATAATGCATCACTTGTCTGAATACCCCAACGTTGTCCGTATAGAGAGTGCGTACGAGGACACCAAAAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAGTTGTTTGATAGAATTGTGAAGAGAGGTCATTACAGTGAAAGAGAAGCTGCTAAGCTTATCAAGACCATTGTTGGGGTTGTTGAGGCGTGTCACTCTCTTGGTGTTGTTCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTTCTTCTTCTGATGAAGATGCTTCTCTTAAATCTACTGACTTTGGCCTCTCTGTTTTCTGCACACCAGGAGAAGCATTTTCGGAACTCGTTGGTAGTGCTTACTATGTGGCACCTGAGGTTTTACATAAGCATTATGGTCCTGAATGTGACGTATGGAGTGCTGGAGTTATCCTCTACATTCTCTTATGTGGTTTTCCTCCTTTTTGGGCTGAGAGTGAAATAGGCATCTTCAGGAAGATTTTACAGGGAAAGTTGGAGTTTGAGATCAATCCTTGGCCTAGCATTTCAGAGAGTGCCAAAGATCTTATAAAGAAAATGCTTGAAAGCAATCCTAAAAAGAGGCTAACTGCTCATCAAGTGTTGTGTCATCCGTGGATTGTGGATGATAAGGTTGCTCCAGATAAACCTTTGGACTGCGCGGTAGTGTCCCGCCTGAAGAAGTTCTCTGCAATGAACAAACTTAAGAAGATGGCTTTACGAGTTATTGCAGAGAGACTATCTGAGGAAGAAATCGGTGGTCTCAAAGAACTGTTCAAAATGATAGACACAGATAAAAGTGGGACTATCACGTTTGAAGAGTTAAAAGATAGTATGAGACGTGTTGGGTCAGAGCTTATGGAATCAGAGATCCAAGAACTCTTGCGTGCGGCTGATGTTGATGAGAGTGGAACAATTGACTATGGAGAGTTCTTAGCTGCAACAATCCACTTGAACAAGCTGGAGAGAGAGGAGAATCTAGTAGCTGCATTCTCTTTCTTTGATAAGGATGCAAGTGGTTACATCACTATCGAAGAGCTTCAACAGGCATGGAAGGAGTTTGGTATAAACGATTCTAATCTTGATGAAATGATCAAAGACATTGATCAAGATAATGATGGACAAATAGACTATGGAGAATTTGTGGCAATGATGAGGAAAGGAAATGGCACTGGAGGAGGGATTGGTCGGAGAACTATGAGGAACTCTCTCAACTTTGGAACTACTCTTCCTGATGAGTCTATGAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

490

Amino Acids

55.38

Weight (kDa)

5.27

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 280	3e-79	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 274	1.2e-26	Protein tyrosine and serine/threonine kinase
EF-hand_1	PF00036	328 - 354	1.2e-07	EF hand domain
EF-hand_7	PF13499	328 - 387	2.5e-13	EF-hand domain pair
EF-hand_6	PF13405	328 - 356	5.5e-07	EF-hand domain
EF-hand_5	PF13202	328 - 350	3.5e-06	EF hand
EF-hand_8	PF13833	340 - 386	8.1e-08	EF-hand domain pair
EF-hand_7	PF13499	398 - 459	3.8e-12	EF-hand domain pair
EF-hand_1	PF00036	402 - 426	9.5e-06	EF hand domain
EF-hand_1	PF00036	434 - 460	5.4e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23580
fragaria_vesca	FvH4_6g35360
malus_domestica	MD09G1176400.v1.1 MD17G1150400.v1.1
prunus_persica	Prupe.3G035400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146801
rosa_laevigata	RLG00000020223
rosa_multiflora	Rmu_co8336567.1_g000001 Rmu_sc0007829.1_g000006 Rmu_sc0015268.1_g000005 Rmu_sc0017620.1_g000002
rosa_roxburghii	Rroxscaffold_2G00099900
rosa_rugosa	Rorug02G0397200
rosa_samantha	Rh2AG453400 Rh2CG440500 Rh2DG475300
rosa_wichuraiana	Rw2G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	571
AccII	CGCG	1 cut(s)	881
AciI	CCGC	3 cut(s)	881, 892, 1109
AclI	AACGTT	2 cut(s)	51, 246
AclWI	GGATC	2 cut(s)	205, 1084
AcsI	RAATTY	2 cut(s)	451, 1358
AcuI	CTGAAG	2 cut(s)	676, 917
AfaI	GTAC	2 cut(s)	118, 269
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflII	CTTAAG	2 cut(s)	440, 923
AflIII	ACRYGT	1 cut(s)	1060
AgsI	TTSAA	6 cut(s)	56, 785, 997, 1037, 1174, 1262
AjiI	CACGTC	1 cut(s)	1061
AjnI	CCWGG	1 cut(s)	526
AloI	GAACNNNNNNTCC	2 cut(s)	1432, 1464
Alw26I	GTCTC	3 cut(s)	949, 986, 1051
AlwI	GGATC	2 cut(s)	205, 1084
AoxI	GGCC	3 cut(s)	91, 505, 737
ApeKI	GCWGC	3 cut(s)	368, 1157, 1205
ApoI	RAATTY	2 cut(s)	451, 1358
Asp700I	GAANNNNTTC	2 cut(s)	902, 1257
AspLEI	GCGC	1 cut(s)	881
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	355, 1144, 1192
BccI	CCATC	4 cut(s)	18, 292, 925, 1331
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	2 cut(s)	1311, 1324
BcoDI	GTCTC	3 cut(s)	949, 986, 1051
BfaI	CTAG	2 cut(s)	741, 1199
BfrI	CTTAAG	2 cut(s)	440, 923
BglII	AGATCT	2 cut(s)	436, 763
BisI	GCNGC	4 cut(s)	369, 1110, 1158, 1206
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	4 cut(s)	370, 1111, 1159, 1207
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	599
BmgBI	CACGTC	1 cut(s)	1061
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	103, 573
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	5 cut(s)	232, 298, 469, 696, 1219
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	4 cut(s)	618, 650, 1411, 1443
BpmI	CTGGAG	4 cut(s)	645, 843, 1202, 1413
Bpu1102I	GCTNAGC	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	1296
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	3 cut(s)	82, 734, 833
BsaXI	ACNNNNNCTCC	2 cut(s)	1347, 1377
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	1396
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	2 cut(s)	918, 1374
Bse8I	GATNNNNATC	1 cut(s)	1296
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	82, 734, 833
BseGI	GGATG	3 cut(s)	829, 850, 1234
BseJI	GATNNNNATC	1 cut(s)	1296
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMI	GCAATG	2 cut(s)	918, 1374
BseMII	CTCAG	5 cut(s)	194, 438, 567, 663, 954
BseNI	ACTGG	1 cut(s)	1396
BseRI	GAGGAG	2 cut(s)	1205, 1410
BseXI	GCAGC	3 cut(s)	355, 1144, 1192
BsgI	GTGCAG	1 cut(s)	505
Bsh1236I	CGCG	1 cut(s)	881
BshFI	GGCC	3 cut(s)	93, 507, 739
BshNI	GGYRCC	1 cut(s)	571
BsiWI	CGTACG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	874, 1036
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	3 cut(s)	949, 986, 1051
BsmBI	CGTCTC	1 cut(s)	1051
BsmFI	GGGAC	2 cut(s)	874, 1036
BsmI	GAATGC	1 cut(s)	1208
BsnI	GGCC	3 cut(s)	93, 507, 739
Bso31I	GGTCTC	1 cut(s)	986
Bsp143I	GATC	7 cut(s)	210, 436, 726, 763, 1089, 1311, 1324
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	3 cut(s)	881, 892, 1109
BspANI	GGCC	3 cut(s)	93, 507, 739
BspCNI	CTCAG	5 cut(s)	195, 439, 568, 664, 955
BspFNI	CGCG	1 cut(s)	881
BspLI	GGNNCC	2 cut(s)	103, 573
BspPI	GGATC	2 cut(s)	205, 1084
BspQI	GCTCTTC	1 cut(s)	1248
BspT107I	GGYRCC	1 cut(s)	571
BspTI	CTTAAG	2 cut(s)	440, 923
BspTNI	GGTCTC	1 cut(s)	986
BsrDI	GCAATG	2 cut(s)	918, 1374
BsrI	ACTGG	1 cut(s)	1396
BssECI	CCNNGG	3 cut(s)	82, 734, 833
BssMI	GATC	7 cut(s)	210, 436, 726, 763, 1089, 1311, 1324
BssT1I	CCWWGG	2 cut(s)	82, 734
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	356, 993
Bst6I	CTCTTC	4 cut(s)	335, 1032, 1248, 1452
BstAFI	CTTAAG	2 cut(s)	440, 923
BstC8I	GCNNGC	3 cut(s)	144, 148, 1107
BstDEI	CTNAG	7 cut(s)	203, 372, 447, 576, 672, 963, 1153
BstDSI	CCRYGG	1 cut(s)	833
BstF5I	GGATG	3 cut(s)	829, 850, 1234
BstFNI	CGCG	1 cut(s)	881
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	7 cut(s)	213, 439, 729, 766, 1092, 1314, 1327
BstMAI	GTCTC	3 cut(s)	949, 986, 1051
BstMBI	GATC	7 cut(s)	210, 436, 726, 763, 1089, 1311, 1324
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstUI	CGCG	1 cut(s)	881
BstV1I	GCAGC	3 cut(s)	355, 1144, 1192
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	4 cut(s)	210, 436, 763, 1089
BstYI	RGATCY	4 cut(s)	210, 436, 763, 1089
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	3 cut(s)	93, 507, 739
BtgI	CCRYGG	1 cut(s)	833
BtrI	CACGTC	1 cut(s)	1061
BtsCI	GGATG	3 cut(s)	829, 850, 1234
BtsIMutI	CAGTG	2 cut(s)	361, 1389
Cac8I	GCNNGC	3 cut(s)	144, 148, 1107
CfoI	GCGC	1 cut(s)	881
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	117, 268
CviAII	CATG	1 cut(s)	1269
CviQI	GTAC	2 cut(s)	117, 268
DdeI	CTNAG	7 cut(s)	203, 372, 447, 576, 672, 963, 1153
DpnI	GATC	7 cut(s)	212, 438, 728, 765, 1091, 1313, 1326
DpnII	GATC	7 cut(s)	210, 436, 726, 763, 1089, 1311, 1324
Eam1104I	CTCTTC	4 cut(s)	335, 1032, 1248, 1452
EarI	CTCTTC	4 cut(s)	335, 1032, 1248, 1452
Eco130I	CCWWGG	2 cut(s)	82, 734
Eco31I	GGTCTC	1 cut(s)	986
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	2 cut(s)	676, 917
Eco81I	CCTNAGG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	82, 734
EcoT22I	ATGCAT	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	82, 734
Esp3I	CGTCTC	1 cut(s)	1051
FaeI	CATG	1 cut(s)	1272
FaqI	GGGAC	2 cut(s)	874, 1036
FatI	CATG	1 cut(s)	1268
FauI	CCCGC	1 cut(s)	899
FbaI	TGATCA	2 cut(s)	1311, 1324
Fnu4HI	GCNGC	4 cut(s)	369, 1110, 1158, 1206
FokI	GGATG	3 cut(s)	816, 857, 1241
Fsp4HI	GCNGC	4 cut(s)	369, 1110, 1158, 1206
FspBI	CTAG	2 cut(s)	741, 1199
GlaI	GCGC	1 cut(s)	880
GluI	GCNGC	4 cut(s)	369, 1110, 1158, 1206
GsuI	CTGGAG	4 cut(s)	645, 843, 1202, 1413
HaeIII	GGCC	3 cut(s)	93, 507, 739
HhaI	GCGC	1 cut(s)	881
Hin1II	CATG	1 cut(s)	1272
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HindIII	AAGCTT	2 cut(s)	140, 374
HinfI	GANTC	4 cut(s)	1082, 1195, 1292, 1457
HphI	GGTGA	1 cut(s)	329
Hpy188III	TCNNGA	9 cut(s)	182, 214, 382, 602, 694, 860, 1301, 1328, 1451
Hpy99I	CGWCG	2 cut(s)	197, 200
HpyAV	CCTTC	2 cut(s)	305, 1267
HpyCH4III	ACNGT	2 cut(s)	356, 993
HpyCH4IV	ACGT	7 cut(s)	51, 198, 246, 285, 612, 1031, 1060
HpyCH4V	TGCA	9 cut(s)	150, 223, 289, 522, 911, 950, 1160, 1208, 1232
HpyF3I	CTNAG	7 cut(s)	203, 372, 447, 576, 672, 963, 1153
HpySE526I	ACGT	7 cut(s)	51, 198, 246, 285, 612, 1031, 1060
Hsp92II	CATG	1 cut(s)	1272
HspAI	GCGC	1 cut(s)	879
Ksp22I	TGATCA	2 cut(s)	1311, 1324
Kzo9I	GATC	7 cut(s)	210, 436, 726, 763, 1089, 1311, 1324
LguI	GCTCTTC	1 cut(s)	1248
LmnI	GCTCC	3 cut(s)	177, 301, 862
Lsp1109I	GCAGC	3 cut(s)	355, 1144, 1192
LweI	GCATC	5 cut(s)	232, 298, 469, 696, 1219
MaeI	CTAG	2 cut(s)	741, 1199
MaeII	ACGT	7 cut(s)	51, 198, 246, 285, 612, 1031, 1060
MaeIII	GTNAC	3 cut(s)	410, 608, 1238
MalI	GATC	7 cut(s)	212, 438, 728, 765, 1091, 1313, 1326
MboI	GATC	7 cut(s)	210, 436, 726, 763, 1089, 1311, 1324
MfeI	CAATTG	1 cut(s)	1134
MflI	RGATCY	4 cut(s)	210, 436, 763, 1089
MluCI	AATT	6 cut(s)	61, 95, 333, 451, 1134, 1358
MlyI	GAGTC	1 cut(s)	1466
MmeI	TCCRAC	2 cut(s)	696, 1388
Mph1103I	ATGCAT	1 cut(s)	225
MroXI	GAANNNNTTC	2 cut(s)	902, 1257
MseI	TTAA	4 cut(s)	441, 489, 924, 1043
MslI	CAYNNNNRTG	1 cut(s)	354
MspCI	CTTAAG	2 cut(s)	440, 923
MspR9I	CCNGG	1 cut(s)	528
MunI	CAATTG	1 cut(s)	1134
Mva1269I	GAATGC	1 cut(s)	1208
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	881
NdeII	GATC	7 cut(s)	210, 436, 726, 763, 1089, 1311, 1324
NlaIII	CATG	1 cut(s)	1272
NlaIV	GGNNCC	2 cut(s)	103, 573
NmuCI	GTSAC	2 cut(s)	410, 608
NsiI	ATGCAT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	1248
PctI	GAATGC	1 cut(s)	1208
PdmI	GAANNNNTTC	2 cut(s)	902, 1257
PfeI	GAWTC	3 cut(s)	1082, 1195, 1292
Pfl23II	CGTACG	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	370, 1111, 1159, 1207
PleI	GAGTC	1 cut(s)	1465
PpsI	GAGTC	1 cut(s)	1465
PsiI	TTATAA	1 cut(s)	770
Psp1406I	AACGTT	2 cut(s)	51, 246
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspLI	CGTACG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	103, 573
PspPI	GGNCC	1 cut(s)	599
PsuI	RGATCY	4 cut(s)	210, 436, 763, 1089
RsaI	GTAC	2 cut(s)	118, 269
RsaNI	GTAC	2 cut(s)	117, 268
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	1248
SaqAI	TTAA	4 cut(s)	441, 489, 924, 1043
SatI	GCNGC	4 cut(s)	369, 1110, 1158, 1206
Sau3AI	GATC	7 cut(s)	210, 436, 726, 763, 1089, 1311, 1324
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	1466
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	5 cut(s)	232, 298, 469, 696, 1219
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	440, 923
SmoI	CTYRAG	2 cut(s)	440, 923
Sse9I	AATT	6 cut(s)	61, 95, 333, 451, 1134, 1358
SsiI	CCGC	3 cut(s)	881, 892, 1109
SspMI	CTAG	2 cut(s)	741, 1199
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	82, 734
TaaI	ACNGT	2 cut(s)	356, 993
TaiI	ACGT	7 cut(s)	54, 201, 249, 288, 615, 1034, 1063
TaqI	TCGA	1 cut(s)	1251
TasI	AATT	6 cut(s)	61, 95, 333, 451, 1134, 1358
TauI	GCSGC	1 cut(s)	1112
TfiI	GAWTC	3 cut(s)	1082, 1195, 1292
Tru1I	TTAA	4 cut(s)	441, 489, 924, 1043
Tru9I	TTAA	4 cut(s)	441, 489, 924, 1043
TscAI	CASTG	2 cut(s)	361, 1396
TseFI	GTSAC	2 cut(s)	410, 608
TseI	GCWGC	3 cut(s)	368, 1157, 1205
Tsp45I	GTSAC	2 cut(s)	410, 608
TspDTI	ATGAA	4 cut(s)	419, 489, 929, 1320
TspGWI	ACGGA	2 cut(s)	242, 822
TspRI	CASTG	2 cut(s)	361, 1396
Vha464I	CTTAAG	2 cut(s)	440, 923
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	451, 1358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmnI	GAANNNNTTC	2 cut(s)	902, 1257
XspI	CTAG	2 cut(s)	741, 1199
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.