Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8336567.1

Orthogroup ID

OG0013787

Physical Location & Seq

Genomic Coordinates Forward (+)

179 .. 993

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8336567.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 815 bp

atgaagaaatcaagctcggccacaccatcgaaccccaaatgggtcctaccctaccagacccaaaacctcactgacctctacaccttgggcaagatccttggccagggtcagtttggaaccacctacctctgcaccgagaagtccacaggccacaacttcgcctgcaaatccatcccgaagcgcaagctgctctgcaaagaggactatgaagacgtgtggagggagattcagatgatgcaccatttgtcggagcacccgcatgtggtgagaatccgaggcacctatgaagaccctggctcggttcacttggtcatggatctatgcaaaggaggagagctctttgatcggattgtgaagaagggtcattacagtgagagagaggctgcaaagctcataaagactattgttggggtcgtggaggcctgtcactctttaggggttatgcaccgtgatctaaagcctgagaatttcttgttcgacagcgacgaggaagactctgctctcaaagctacggacttcgggctttcggttttctacaagccaggtgaaatcttctctgatgtagtcggtagtccttactatgttgcccctgaggtgctgtgcaagcactatgggcctgaatcagatgtgtggagtgcaggagtgatcttgtatattctgttaagtggggtgcctccattttgggctgagactgagactgggatcttcaggcagattttgcagtcaagattggattttgagtcccaaccatggcctgggatttcagacagtgccaaggacttgattgccaaaatgcttgagaggaacccaaggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

271

Amino Acids

30.63

Weight (kDa)

6.07

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23580
fragaria_vesca	FvH4_6g35360
malus_domestica	MD09G1176400.v1.1 MD17G1150400.v1.1
prunus_persica	Prupe.3G035400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146801
rosa_laevigata	RLG00000020223
rosa_multiflora	Rmu_co8336567.1_g000001 Rmu_sc0007829.1_g000006 Rmu_sc0015268.1_g000005 Rmu_sc0017620.1_g000002
rosa_roxburghii	Rroxscaffold_2G00099900
rosa_rugosa	Rorug02G0397200
rosa_samantha	Rh2AG453400 Rh2CG440500 Rh2DG475300
rosa_wichuraiana	Rw2G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	278, 670
AccB7I	CCANNNNNTGG	1 cut(s)	755
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	88, 324, 710
AcoI	YGGCCR	2 cut(s)	18, 100
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	691
AfiI	CCNNNNNNNGG	7 cut(s)	40, 103, 247, 262, 298, 750, 755
AflIII	ACRYGT	1 cut(s)	213
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	4 cut(s)	102, 292, 541, 754
AluBI	AGCT	5 cut(s)	15, 187, 337, 391, 509
AluI	AGCT	5 cut(s)	15, 187, 337, 391, 509
Alw21I	GWGCWC	2 cut(s)	255, 339
Alw26I	GTCTC	2 cut(s)	683, 689
AlwI	GGATC	3 cut(s)	88, 324, 710
AoxI	GGCC	6 cut(s)	18, 100, 148, 420, 614, 752
ApeKI	GCWGC	2 cut(s)	187, 383
ApoI	RAATTY	1 cut(s)	466
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	43, 614
AsuHPI	GGTGA	2 cut(s)	277, 557
AvaII	GGWCC	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	2 cut(s)	278, 670
BanII	GRGCYC	1 cut(s)	339
BarI	GAAGNNNNNNTAC	2 cut(s)	350, 382
BbsI	GAAGAC	3 cut(s)	216, 294, 498
Bbv12I	GWGCWC	2 cut(s)	255, 339
BbvI	GCAGC	2 cut(s)	174, 370
BccI	CCATC	2 cut(s)	34, 179
BciT130I	CCWGG	4 cut(s)	104, 294, 543, 756
BcoDI	GTCTC	2 cut(s)	683, 689
BisI	GCNGC	2 cut(s)	188, 384
BlsI	GCNGC	2 cut(s)	189, 385
Bme1390I	CCNGG	4 cut(s)	104, 294, 543, 756
Bme18I	GGWCC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	43, 614
BmiI	GGNNCC	5 cut(s)	44, 118, 280, 672, 806
BmrFI	CCNGG	4 cut(s)	104, 294, 543, 756
BmrI	ACTGGG	1 cut(s)	708
BmsI	GCATC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	708
BpiI	GAAGAC	3 cut(s)	216, 294, 498
BplI	GAGNNNNNCTC	4 cut(s)	321, 353, 479, 511
BsaJI	CCNNGG	9 cut(s)	84, 97, 103, 274, 292, 749, 755, 774, 809
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 103, 247, 262, 298, 750, 755
Bse1I	ACTGG	1 cut(s)	703
Bse21I	CCTNAGG	1 cut(s)	591
BseBI	CCWGG	4 cut(s)	104, 294, 543, 756
BseDI	CCNNGG	9 cut(s)	84, 97, 103, 274, 292, 749, 755, 774, 809
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	7 cut(s)	40, 103, 247, 262, 298, 750, 755
BseMII	CTCAG	4 cut(s)	453, 582, 678, 684
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	174, 370
BsgI	GTGCAG	2 cut(s)	115, 657
BshFI	GGCC	6 cut(s)	20, 102, 150, 422, 616, 754
BshNI	GGYRCC	2 cut(s)	278, 670
BsiHKAI	GWGCWC	2 cut(s)	255, 339
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	7 cut(s)	40, 103, 247, 262, 298, 750, 755
BsmAI	GTCTC	2 cut(s)	683, 689
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	6 cut(s)	20, 102, 150, 422, 616, 754
Bsp1286I	GDGCHC	2 cut(s)	255, 339
Bsp143I	GATC	6 cut(s)	93, 316, 343, 451, 645, 702
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	6 cut(s)	20, 102, 150, 422, 616, 754
BspCNI	CTCAG	4 cut(s)	454, 583, 679, 685
BspLI	GGNNCC	5 cut(s)	44, 118, 280, 672, 806
BspPI	GGATC	3 cut(s)	88, 324, 710
BspT107I	GGYRCC	2 cut(s)	278, 670
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	9 cut(s)	84, 97, 103, 274, 292, 749, 755, 774, 809
BssMI	GATC	6 cut(s)	93, 316, 343, 451, 645, 702
BssT1I	CCWWGG	5 cut(s)	84, 97, 749, 774, 809
Bst2UI	CCWGG	4 cut(s)	104, 294, 543, 756
Bst4CI	ACNGT	3 cut(s)	371, 449, 770
BstAPI	GCANNNNNTGC	1 cut(s)	718
BstC8I	GCNNGC	3 cut(s)	163, 185, 605
BstDEI	CTNAG	4 cut(s)	462, 591, 687, 693
BstDSI	CCRYGG	1 cut(s)	749
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	6 cut(s)	96, 319, 346, 454, 648, 705
BstMAI	GTCTC	2 cut(s)	683, 689
BstMBI	GATC	6 cut(s)	93, 316, 343, 451, 645, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 506, 604, 613, 718
BstNI	CCWGG	4 cut(s)	104, 294, 543, 756
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	4 cut(s)	102, 292, 541, 754
BstV1I	GCAGC	2 cut(s)	174, 370
BstV2I	GAAGAC	3 cut(s)	216, 294, 498
BstX2I	RGATCY	3 cut(s)	93, 316, 702
BstYI	RGATCY	3 cut(s)	93, 316, 702
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	6 cut(s)	20, 102, 150, 422, 616, 754
BtgI	CCRYGG	1 cut(s)	749
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	69, 376, 775
Cac8I	GCNNGC	3 cut(s)	163, 185, 605
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	43, 614
CviAII	CATG	3 cut(s)	260, 313, 750
DdeI	CTNAG	4 cut(s)	462, 591, 687, 693
DpnI	GATC	6 cut(s)	95, 318, 345, 453, 647, 704
DpnII	GATC	6 cut(s)	93, 316, 343, 451, 645, 702
EaeI	YGGCCR	2 cut(s)	18, 100
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	5 cut(s)	84, 97, 749, 774, 809
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	691
Eco81I	CCTNAGG	1 cut(s)	591
EcoICRI	GAGCTC	1 cut(s)	337
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	4 cut(s)	102, 292, 541, 754
EcoT14I	CCWWGG	5 cut(s)	84, 97, 749, 774, 809
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	5 cut(s)	84, 97, 749, 774, 809
FaeI	CATG	3 cut(s)	263, 316, 753
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	3 cut(s)	259, 312, 749
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	188, 384
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	2 cut(s)	188, 384
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	2 cut(s)	188, 384
HaeIII	GGCC	6 cut(s)	20, 102, 150, 422, 616, 754
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	263, 316, 753
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	5 cut(s)	226, 270, 494, 620, 740
HphI	GGTGA	2 cut(s)	277, 557
Hpy166II	GTNNAC	2 cut(s)	144, 304
Hpy188I	TCNGA	7 cut(s)	231, 250, 275, 348, 559, 625, 766
Hpy188III	TCNNGA	2 cut(s)	175, 726
Hpy8I	GTNNAC	2 cut(s)	144, 304
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	3 cut(s)	371, 449, 770
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 506, 604, 613, 718
HpyF3I	CTNAG	4 cut(s)	462, 591, 687, 693
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	263, 316, 753
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	6 cut(s)	93, 316, 343, 451, 645, 702
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	2 cut(s)	174, 370
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	6 cut(s)	95, 318, 345, 453, 647, 704
MboI	GATC	6 cut(s)	93, 316, 343, 451, 645, 702
MboII	GAAGA	7 cut(s)	16, 221, 299, 367, 503, 544, 697
MflI	RGATCY	3 cut(s)	93, 316, 702
MhlI	GDGCHC	2 cut(s)	255, 339
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	466
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	488, 749
MmeI	TCCRAC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	2 cut(s)	258, 369
Msp20I	TGGCCA	1 cut(s)	102
MspR9I	CCNGG	4 cut(s)	104, 294, 543, 756
MvaI	CCWGG	4 cut(s)	104, 294, 543, 756
MwoI	GCNNNNNNNGC	5 cut(s)	187, 506, 604, 613, 718
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	6 cut(s)	93, 316, 343, 451, 645, 702
NlaIII	CATG	3 cut(s)	263, 316, 753
NlaIV	GGNNCC	5 cut(s)	44, 118, 280, 672, 806
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	226, 270, 620
PflMI	CCANNNNNTGG	1 cut(s)	755
PkrI	GCNGC	2 cut(s)	189, 385
PleI	GAGTC	2 cut(s)	488, 748
PpsI	GAGTC	2 cut(s)	488, 748
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	4 cut(s)	102, 292, 541, 754
PspGI	CCWGG	4 cut(s)	102, 292, 541, 754
PspN4I	GGNNCC	5 cut(s)	44, 118, 280, 672, 806
PspPI	GGNCC	2 cut(s)	43, 614
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	3 cut(s)	93, 316, 702
RseI	CAYNNNNRTG	2 cut(s)	258, 369
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	2 cut(s)	188, 384
Sau3AI	GATC	6 cut(s)	93, 316, 343, 451, 645, 702
Sau96I	GGNCC	2 cut(s)	43, 614
SchI	GAGTC	2 cut(s)	488, 749
ScrFI	CCNGG	4 cut(s)	104, 294, 543, 756
SduI	GDGCHC	2 cut(s)	255, 339
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	258, 369
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	1 cut(s)	466
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	4 cut(s)	102, 292, 541, 754
StyI	CCWWGG	5 cut(s)	84, 97, 749, 774, 809
TaaI	ACNGT	3 cut(s)	371, 449, 770
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	29, 477
TasI	AATT	1 cut(s)	466
TfiI	GAWTC	3 cut(s)	226, 270, 620
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	3 cut(s)	76, 376, 775
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	2 cut(s)	187, 383
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	17, 222, 300
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	3 cut(s)	76, 376, 775
Van91I	CCANNNNNTGG	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	2 cut(s)	110, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.