Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016041

Physical Location & Seq

Genomic Coordinates Reverse (-)

9172911 .. 9174598

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAGACGTCAACCACCACGTCCACGTAACTCACCACCGCAATCTCACTCATCTCCGTCGTCATCTTCATCGGAATTCGAATTTAACATCTCAATCTCGCCGCGAAAAGCTTCTTCTTCGCTTTGTCCCGCCGATGAACTCTTTTACAAAGGCCAGCTTCTTCCTCTTCAGCTCTCTCCTCGTCTCTCTCTAGTCCGTACACTTGGTTCTTCTACTTCTTCCTCAGACTACACTTCTTCCTCTTCCTCCTCCGTCGCAACGTCCGCCGCACGTGACTCCACTGAATCTAACTCCTCCACTGATTCCACAGCTTCTTTCCCTCTCCTTCACCCTCCTCCGCTTGATTGTTGTGACTCTTCTCGTCCTAGCTCTGTAACTGACGATGAAGATTTCTTCTTTAAACCTCCAAAGAACAAATCTTCAAGTGGTGGTTTCTCACTTTCTAGATTCTCCTCTGTTTTCAAGAAAGATCCCAAAACCAATCTCCACCACCACTCCTCCTCCTCTTCCACCGCAACAACCGCCGCAGCTCCGTCGTCGGTGAAGAGAATGAGCTCAACAGCTAAAGAAGTAATACGGAAATACATGAAAAAAGTCAAACCATTATACGAAAAATTATCTCCAAAACAGAGCTCCAATATAAAAACAGAGTCATCATCATCTCTCAAAGATTCCGGTAACAACATCCGTGGGACCACCACCGTAACCACCGTCACCGCCGCTCCAACCGTTGTCTCCTCCGGTGGTGGTTTATCAATCTCTTTCTCCGGAAACCTAATGAAATACACAAAACGTGGACGATGCGCGGCGAGTTGTCCATCGTCGATGAGGTCATCTCCGAATCACTCCGGTGTACTGACACGTGGCGGTTTTCCGGTTCATCAAGGTAGTTGCAGTAGCAGCAGTAGCAACAACAACAGTGTGTCATCTTCAATGGAAGAGTTACAAAGTGCTATTCAAGGAGCTATTGCTCATTGCAAGAACTCAATGTTACAGAAGAATTTGGTTAGTAGTCTCGAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009536 GO:0009719 GO:0009725 GO:0009741 GO:0009892 GO:0010033 GO:0010563 GO:0014070 GO:0016020 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0030234 GO:0031323 GO:0031324 GO:0033993 GO:0042221 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051174 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

36.11

Weight (kDa)

9.76

Isoelectric Point (pI)

78.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26230
fragaria_vesca	FvH4_4g15080
malus_domestica	MD13G1188500.v1.1 MD16G1188900.v1.1
prunus_persica	Prupe.1G155600_v2.0.a1
pyrus_communis	pycom13g16280
rosa_laevigata	RLG00000007951
rosa_multiflora	Rmu_co8515525.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360660
rosa_rugosa	Rorug04G0144900
rosa_samantha	Rh4AG207500 Rh4BG204600 Rh4CG218400 Rh4DG204500
rosa_wichuraiana	Rw4G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	10
AccBSI	CCGCTC	1 cut(s)	722
AccII	CGCG	2 cut(s)	103, 806
AccIII	TCCGGA	1 cut(s)	767
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	3 cut(s)	74, 80, 1000
AcuI	CTGAAG	1 cut(s)	152
AcvI	CACGTG	2 cut(s)	272, 863
AcyI	GRCGYC	1 cut(s)	7
AfaI	GTAC	2 cut(s)	199, 855
AflIII	ACRYGT	1 cut(s)	860
AgsI	TTSAA	4 cut(s)	423, 463, 933, 959
AjiI	CACGTC	1 cut(s)	20
AleI	CACNNNNGTG	1 cut(s)	849
Alw21I	GWGCWC	2 cut(s)	557, 635
Alw26I	GTCTC	3 cut(s)	188, 739, 1019
AlwI	GGATC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	1016
Aor13HI	TCCGGA	1 cut(s)	767
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	527, 900
ApoI	RAATTY	3 cut(s)	74, 80, 1000
Asp700I	GAANNNNTTC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	806
AspS9I	GGNCC	1 cut(s)	693
AsuHPI	GGTGA	4 cut(s)	24, 320, 553, 706
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	693
BanII	GRGCYC	2 cut(s)	557, 635
BbrPI	CACGTG	2 cut(s)	272, 863
Bbv12I	GWGCWC	2 cut(s)	557, 635
BbvI	GCAGC	2 cut(s)	539, 912
BccI	CCATC	1 cut(s)	826
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BcoDI	GTCTC	3 cut(s)	188, 739, 1019
BfaI	CTAG	4 cut(s)	191, 366, 444, 1024
BglII	AGATCT	1 cut(s)	1020
BisI	GCNGC	7 cut(s)	101, 267, 525, 528, 720, 807, 901
BlsI	GCNGC	7 cut(s)	102, 268, 526, 529, 721, 808, 902
Bme18I	GGWCC	1 cut(s)	693
BmeT110I	CYCGRG	1 cut(s)	1016
BmgBI	CACGTC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	1 cut(s)	694
BmsI	GCATC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	820, 852
Bpu14I	TTCGAA	1 cut(s)	78
BsaAI	YACGTR	3 cut(s)	26, 272, 863
BsaHI	GRCGYC	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	688
BsaWI	WCCGGW	5 cut(s)	674, 740, 767, 848, 874
BsaXI	ACNNNNNCTCC	8 cut(s)	479, 482, 485, 509, 512, 515, 706, 736
Bse3DI	GCAATG	1 cut(s)	973
BseAI	TCCGGA	1 cut(s)	767
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	1 cut(s)	684
BseMI	GCAATG	1 cut(s)	973
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	9 cut(s)	168, 238, 283, 324, 442, 487, 490, 493, 727
BseXI	GCAGC	2 cut(s)	539, 912
Bsh1236I	CGCG	2 cut(s)	103, 806
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	557, 635
BsiHKCI	CYCGRG	1 cut(s)	1016
BsiSI	CCGG	5 cut(s)	675, 741, 768, 849, 875
BslFI	GGGAC	2 cut(s)	111, 706
BsmAI	GTCTC	3 cut(s)	188, 739, 1019
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	111, 706
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	1016
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	557, 635
Bsp13I	TCCGGA	1 cut(s)	767
Bsp143I	GATC	2 cut(s)	469, 1020
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	236
BspEI	TCCGGA	1 cut(s)	767
BspFNI	CGCG	2 cut(s)	103, 806
BspLI	GGNNCC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	464
BspT104I	TTCGAA	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	973
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	2 cut(s)	469, 1020
BssNI	GRCGYC	1 cut(s)	7
Bst4CI	ACNGT	4 cut(s)	703, 712, 730, 920
Bst6I	CTCTTC	6 cut(s)	171, 247, 361, 511, 539, 933
BstACI	GRCGYC	1 cut(s)	7
BstBAI	YACGTR	3 cut(s)	26, 272, 863
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	223
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	1 cut(s)	684
BstFNI	CGCG	2 cut(s)	103, 806
BstHHI	GCGC	1 cut(s)	806
BstKTI	GATC	2 cut(s)	472, 1023
BstMAI	GTCTC	3 cut(s)	188, 739, 1019
BstMBI	GATC	2 cut(s)	469, 1020
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 521, 900, 906
BstUI	CGCG	2 cut(s)	103, 806
BstV1I	GCAGC	2 cut(s)	539, 912
BstX2I	RGATCY	2 cut(s)	469, 1020
BstYI	RGATCY	2 cut(s)	469, 1020
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	688
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	279, 297, 925
Cac8I	GCNNGC	1 cut(s)	155
CfoI	GCGC	1 cut(s)	806
Cfr13I	GGNCC	1 cut(s)	693
Csp6I	GTAC	2 cut(s)	198, 854
CspCI	CAANNNNNGTGG	2 cut(s)	670, 705
CviAII	CATG	1 cut(s)	586
CviQI	GTAC	2 cut(s)	198, 854
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	2 cut(s)	471, 1022
DpnII	GATC	2 cut(s)	469, 1020
DraI	TTTAAA	1 cut(s)	400
Eam1104I	CTCTTC	6 cut(s)	171, 247, 361, 511, 539, 933
EarI	CTCTTC	6 cut(s)	171, 247, 361, 511, 539, 933
EciI	GGCGGA	1 cut(s)	253
Ecl136II	GAGCTC	2 cut(s)	555, 633
Eco24I	GRGCYC	2 cut(s)	557, 635
Eco47I	GGWCC	1 cut(s)	693
Eco53kI	GAGCTC	2 cut(s)	555, 633
Eco57I	CTGAAG	1 cut(s)	152
Eco72I	CACGTG	2 cut(s)	272, 863
Eco88I	CYCGRG	1 cut(s)	1016
EcoICRI	GAGCTC	2 cut(s)	555, 633
EcoRI	GAATTC	1 cut(s)	74
EcoT38I	GRGCYC	2 cut(s)	557, 635
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	1 cut(s)	589
FaiI	YATR	3 cut(s)	587, 607, 641
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	2 cut(s)	111, 706
FatI	CATG	1 cut(s)	585
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	7 cut(s)	101, 267, 525, 528, 720, 807, 901
FokI	GGATG	1 cut(s)	671
FriOI	GRGCYC	2 cut(s)	557, 635
Fsp4HI	GCNGC	7 cut(s)	101, 267, 525, 528, 720, 807, 901
FspBI	CTAG	4 cut(s)	191, 366, 444, 1024
GlaI	GCGC	1 cut(s)	805
GluI	GCNGC	7 cut(s)	101, 267, 525, 528, 720, 807, 901
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	5 cut(s)	675, 741, 768, 849, 875
HhaI	GCGC	1 cut(s)	806
Hin1I	GRCGYC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	589
Hin6I	GCGC	1 cut(s)	804
HinP1I	GCGC	1 cut(s)	804
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	8 cut(s)	275, 284, 302, 353, 447, 650, 671, 841
HpaII	CCGG	5 cut(s)	675, 741, 768, 849, 875
HphI	GGTGA	4 cut(s)	24, 320, 553, 706
Hpy166II	GTNNAC	5 cut(s)	11, 23, 200, 797, 854
Hpy188I	TCNGA	3 cut(s)	73, 226, 840
Hpy188III	TCNNGA	5 cut(s)	444, 463, 768, 1016, 1018
Hpy8I	GTNNAC	5 cut(s)	11, 23, 200, 797, 854
Hpy99I	CGWCG	5 cut(s)	61, 257, 538, 541, 826
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	4 cut(s)	703, 712, 730, 920
HpyCH4IV	ACGT	7 cut(s)	7, 19, 25, 260, 271, 793, 862
HpyCH4V	TGCA	2 cut(s)	894, 978
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 521, 900, 906
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	7 cut(s)	7, 19, 25, 260, 271, 793, 862
Hsp92I	GRCGYC	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	589
HspAI	GCGC	1 cut(s)	804
Kpn2I	TCCGGA	1 cut(s)	767
Kzo9I	GATC	2 cut(s)	469, 1020
LmnI	GCTCC	4 cut(s)	535, 638, 727, 962
LpnPI	CCDG	6 cut(s)	167, 688, 754, 781, 862, 888
Lsp1109I	GCAGC	2 cut(s)	539, 912
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	4 cut(s)	191, 366, 444, 1024
MaeII	ACGT	7 cut(s)	7, 19, 25, 260, 271, 793, 862
MaeIII	GTNAC	9 cut(s)	26, 272, 350, 373, 677, 703, 712, 942, 990
MalI	GATC	2 cut(s)	471, 1022
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	2 cut(s)	469, 1020
MflI	RGATCY	2 cut(s)	469, 1020
MhlI	GDGCHC	2 cut(s)	557, 635
MluCI	AATT	4 cut(s)	74, 80, 614, 1000
MlyI	GAGTC	3 cut(s)	269, 347, 659
MmeI	TCCRAC	1 cut(s)	749
MroI	TCCGGA	1 cut(s)	767
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	2 cut(s)	84, 399
MslI	CAYNNNNRTG	1 cut(s)	849
MspI	CCGG	5 cut(s)	675, 741, 768, 849, 875
MvnI	CGCG	2 cut(s)	103, 806
MwoI	GCNNNNNNNGC	4 cut(s)	263, 521, 900, 906
NdeII	GATC	2 cut(s)	469, 1020
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	3 cut(s)	272, 350, 712
NspV	TTCGAA	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	849
PaeR7I	CTCGAG	1 cut(s)	1016
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	5 cut(s)	284, 302, 447, 671, 841
PkrI	GCNGC	7 cut(s)	102, 268, 526, 529, 721, 808, 902
PleI	GAGTC	3 cut(s)	269, 347, 658
PmaCI	CACGTG	2 cut(s)	272, 863
PmlI	CACGTG	2 cut(s)	272, 863
PpsI	GAGTC	3 cut(s)	269, 347, 658
Ppu21I	YACGTR	3 cut(s)	26, 272, 863
Psp124BI	GAGCTC	2 cut(s)	557, 635
PspCI	CACGTG	2 cut(s)	272, 863
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	1 cut(s)	693
PsrI	GAACNNNNNNTAC	2 cut(s)	190, 222
PsuI	RGATCY	2 cut(s)	469, 1020
RsaI	GTAC	2 cut(s)	199, 855
RsaNI	GTAC	2 cut(s)	198, 854
RseI	CAYNNNNRTG	1 cut(s)	849
SacI	GAGCTC	2 cut(s)	557, 635
SaqAI	TTAA	2 cut(s)	84, 399
SatI	GCNGC	7 cut(s)	101, 267, 525, 528, 720, 807, 901
Sau3AI	GATC	2 cut(s)	469, 1020
Sau96I	GGNCC	1 cut(s)	693
SchI	GAGTC	3 cut(s)	269, 347, 659
SduI	GDGCHC	2 cut(s)	557, 635
SfaNI	GCATC	1 cut(s)	791
Sfr274I	CTCGAG	1 cut(s)	1016
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	1 cut(s)	693
SlaI	CTCGAG	1 cut(s)	1016
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
Sse9I	AATT	4 cut(s)	74, 80, 614, 1000
SspMI	CTAG	4 cut(s)	191, 366, 444, 1024
SstI	GAGCTC	2 cut(s)	557, 635
TaaI	ACNGT	4 cut(s)	703, 712, 730, 920
TaiI	ACGT	7 cut(s)	10, 22, 28, 263, 274, 796, 865
TaqI	TCGA	3 cut(s)	78, 824, 1017
TasI	AATT	4 cut(s)	74, 80, 614, 1000
TatI	WGTACW	1 cut(s)	853
TauI	GCSGC	5 cut(s)	103, 269, 527, 722, 809
TfiI	GAWTC	5 cut(s)	284, 302, 447, 671, 841
Tru1I	TTAA	2 cut(s)	84, 399
Tru9I	TTAA	2 cut(s)	84, 399
TscAI	CASTG	3 cut(s)	286, 304, 925
TseFI	GTSAC	3 cut(s)	272, 350, 712
TseI	GCWGC	2 cut(s)	527, 900
Tsp45I	GTSAC	3 cut(s)	272, 350, 712
TspDTI	ATGAA	6 cut(s)	57, 150, 399, 602, 794, 869
TspGWI	ACGGA	6 cut(s)	45, 185, 241, 522, 592, 677
TspRI	CASTG	3 cut(s)	286, 304, 925
VpaK11BI	GGWCC	1 cut(s)	693
XapI	RAATTY	3 cut(s)	74, 80, 1000
XbaI	TCTAGA	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	1016
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	4 cut(s)	191, 366, 444, 1024
ZraI	GACGTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.