AT5G26730

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
9300416 .. 9302158
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26730.1

Sequence Viewer

Length: 807 bp
ATGTGGTGGGTTGTACATCGACGGATGAACAAGCGGAACTTAAACCGTGATTGCGAGAATAAGAGGATATGTGAGTTGGGGAAAGACTTGGAAGAGATATTAAAGGGGAGGCTCGAGACGATAGAGGAGGAACCGGAAGCAGAAGAGCGAGAGCGGTTAGGAGACTCGCATAAGCCAATGTTGGTGAAGGCAAAGATGAAAGTGGAGAAAGGAAAATCAATAGTAAAAGCAAAAGTGAAGAGTGGGAAAGTCTTTTACATGTTGTGTGTTATCGGCTTAGCCTCTAAACGCGGGTTTAATGATCTTCCACCACATCTCATATTGAGACATGACAACTACAACCAAACCGACCTCATCTCTGCCATGACCGACATGAGAAGGCAATCTTACAACGGTTTTGTCATCCTTCTTCGTTTCCTCAACGATACAAATTACTTCAGGAACACAGATATTACTTTCTTGATGCCTAGCGACAACGATATTTCTCATGCAGACATTACTCCGGAGAGTCTTGAAACATTTATCCTAAAACATACGATCCCTGCTTGGCTTATGATCAACCACATGCTTCATTTTCCAAACAGAACTCTTGTTCCTTGTAGCTTCTCTGATAGAATGTTCACCATCACAAAATCTGGAGGGTCCGGGATATATGTGAACAACGCGAGGATCGTTACTCCTAATGTTTGTCAGAATTCTCGTATATCTTGCCATGGAATCAGCGACGTTATCTCATTCAACCAAAACTATGTTTCAACGAAAATGTTACCATCAGTTCGTCGAAACATCACTTCGTCAAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

268

Amino Acids

30.99

Weight (kDa)

9.37

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26730
malus_domestica MD09G1122000.v1.1
prunus_persica Prupe.3G201600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0156681
rosa_laevigata RLG00000020931
rosa_multiflora Rmu_sc0001130.1_g000004
rosa_roxburghii Rroxscaffold_2G00092840
rosa_samantha Rh2BG534200 Rh2DG543000
rosa_wichuraiana Rw2G042990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 2 cut(s) 291, 665
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 3 cut(s) 34, 154, 291
AclWI GGATC 2 cut(s) 532, 677
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 421
AfaI GTAC 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 515, 739, 756
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 1 cut(s) 603
AluI AGCT 1 cut(s) 603
Alw26I GTCTC 3 cut(s) 110, 156, 319
AlwI GGATC 2 cut(s) 532, 677
Ama87I CYCGRG 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 502
ApoI RAATTY 1 cut(s) 694
AspS9I GGNCC 1 cut(s) 642
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 2 cut(s) 196, 613
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 642
BccI CCATC 2 cut(s) 632, 778
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 3 cut(s) 110, 156, 319
BfaI CTAG 1 cut(s) 468
BlpI GCTNAGC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 642
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 2 cut(s) 132, 643
BmrFI CCNGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 657
Bpu1102I GCTNAGC 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 712
BsaWI WCCGGW 2 cut(s) 133, 502
BseAI TCCGGA 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 712
BseGI GGATG 2 cut(s) 30, 402
BseRI GAGGAG 1 cut(s) 140
Bsh1236I CGCG 2 cut(s) 291, 665
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 3 cut(s) 134, 503, 645
BsmAI GTCTC 3 cut(s) 110, 156, 319
BsmBI CGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 502
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 4 cut(s) 301, 537, 555, 669
Bsp1720I GCTNAGC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 712
BspACI CCGC 3 cut(s) 34, 154, 291
BspEI TCCGGA 1 cut(s) 502
BspFNI CGCG 2 cut(s) 291, 665
BspLI GGNNCC 2 cut(s) 132, 643
BspPI GGATC 2 cut(s) 532, 677
BspQI GCTCTTC 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 712
BssMI GATC 4 cut(s) 301, 537, 555, 669
BssT1I CCWWGG 1 cut(s) 712
Bst4CI ACNGT 2 cut(s) 47, 395
Bst6I CTCTTC 3 cut(s) 87, 138, 233
BstAUI TGTACA 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 277
BstDSI CCRYGG 1 cut(s) 712
BstF5I GGATG 2 cut(s) 30, 402
BstFNI CGCG 2 cut(s) 291, 665
BstKTI GATC 4 cut(s) 304, 540, 558, 672
BstMAI GTCTC 3 cut(s) 110, 156, 319
BstMBI GATC 4 cut(s) 301, 537, 555, 669
BstNSI RCATGY 2 cut(s) 262, 568
BstSCI CCNGG 1 cut(s) 644
BstUI CGCG 2 cut(s) 291, 665
BtgI CCRYGG 1 cut(s) 712
BtsCI GGATG 2 cut(s) 30, 402
Cfr13I GGNCC 1 cut(s) 642
Csp6I GTAC 1 cut(s) 14
CviAII CATG 7 cut(s) 259, 329, 364, 373, 488, 565, 713
CviJI RGCY 6 cut(s) 112, 175, 276, 281, 550, 603
CviKI_1 RGCY 6 cut(s) 112, 175, 276, 281, 550, 603
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 277
DpnI GATC 4 cut(s) 303, 539, 557, 671
DpnII GATC 4 cut(s) 301, 537, 555, 669
Eam1104I CTCTTC 3 cut(s) 87, 138, 233
EarI CTCTTC 3 cut(s) 87, 138, 233
Eco130I CCWWGG 1 cut(s) 712
Eco47I GGWCC 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 712
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 7 cut(s) 262, 332, 367, 376, 491, 568, 716
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 370, 402
FatI CATG 7 cut(s) 258, 328, 363, 372, 487, 564, 712
FauI CCCGC 1 cut(s) 284
FbaI TGATCA 1 cut(s) 555
FokI GGATG 2 cut(s) 37, 389
FspBI CTAG 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 657
HapII CCGG 3 cut(s) 134, 503, 645
Hin1II CATG 7 cut(s) 262, 332, 367, 376, 491, 568, 716
HinfI GANTC 3 cut(s) 164, 508, 717
HpaII CCGG 3 cut(s) 134, 503, 645
HphI GGTGA 2 cut(s) 196, 613
Hpy166II GTNNAC 2 cut(s) 621, 658
Hpy188I TCNGA 2 cut(s) 610, 693
Hpy188III TCNNGA 6 cut(s) 115, 439, 460, 503, 512, 636
Hpy8I GTNNAC 2 cut(s) 621, 658
Hpy99I CGWCG 3 cut(s) 24, 728, 783
HpyAV CCTTC 3 cut(s) 181, 372, 416
HpyCH4III ACNGT 2 cut(s) 47, 395
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 1 cut(s) 491
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 7 cut(s) 262, 332, 367, 376, 491, 568, 716
Kpn2I TCCGGA 1 cut(s) 502
Ksp22I TGATCA 1 cut(s) 555
Kzo9I GATC 4 cut(s) 301, 537, 555, 669
LguI GCTCTTC 1 cut(s) 138
LpnPI CCDG 6 cut(s) 147, 424, 516, 555, 621, 658
LweI GCATC 1 cut(s) 453
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 2 cut(s) 673, 765
MalI GATC 4 cut(s) 303, 539, 557, 671
MbiI CCGCTC 1 cut(s) 154
MboI GATC 4 cut(s) 301, 537, 555, 669
MboII GAAGA 5 cut(s) 104, 155, 250, 296, 401
MluCI AATT 2 cut(s) 430, 694
MlyI GAGTC 2 cut(s) 158, 517
MnlI CCTC 9 cut(s) 57, 102, 118, 121, 292, 362, 428, 632, 660
MroI TCCGGA 1 cut(s) 502
MseI TTAA 3 cut(s) 41, 101, 297
MspI CCGG 3 cut(s) 134, 503, 645
MspR9I CCNGG 1 cut(s) 646
MvnI CGCG 2 cut(s) 291, 665
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 712
NdeII GATC 4 cut(s) 301, 537, 555, 669
NlaIII CATG 7 cut(s) 262, 332, 367, 376, 491, 568, 716
NlaIV GGNNCC 2 cut(s) 132, 643
NspI RCATGY 2 cut(s) 262, 568
PaeR7I CTCGAG 1 cut(s) 113
PciI ACATGT 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PfeI GAWTC 1 cut(s) 717
PfoI TCCNGGA 1 cut(s) 644
PleI GAGTC 2 cut(s) 158, 516
PpsI GAGTC 2 cut(s) 158, 516
PscI ACATGT 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 132, 643
PspPI GGNCC 1 cut(s) 642
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 3 cut(s) 41, 101, 297
Sau3AI GATC 4 cut(s) 301, 537, 555, 669
Sau96I GGNCC 1 cut(s) 642
SchI GAGTC 2 cut(s) 158, 517
ScrFI CCNGG 1 cut(s) 646
SetI ASST 3 cut(s) 354, 605, 729
SfaNI GCATC 1 cut(s) 453
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 642
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 430, 694
SsiI CCGC 3 cut(s) 34, 154, 291
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 1 cut(s) 712
TaaI ACNGT 2 cut(s) 47, 395
TaiI ACGT 1 cut(s) 729
TaqI TCGA 3 cut(s) 19, 114, 781
TaqII GACCGA 1 cut(s) 383
TasI AATT 2 cut(s) 430, 694
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 717
Tru1I TTAA 3 cut(s) 41, 101, 297
Tru9I TTAA 3 cut(s) 41, 101, 297
TspDTI ATGAA 3 cut(s) 41, 212, 560
TspGWI ACGGA 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 1 cut(s) 694
XceI RCATGY 2 cut(s) 262, 568
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.