Rroxscaffold_2G00092840

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
14307408 .. 14307959
552 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00092840.1

Sequence Viewer

Length: 552 bp
ATGGCTTTCTGGTTTTTCGCCCTATTACTATTTGCAGTTGGAGATTCTAAGCCTGCAAATCCAATCAACCAATCTCATCTGCAGTCAGCCATGGTTGACATGAGAAAGGGGTCTTACCACGGTTTTGTTCTCCTCCTGAAGATCATAAACAACAGCATCCCCGACTCGCTGAGGAATTCAGACATAACTTTCTTCATGCCAAATGATAAGGAATTATCAGAAGCTACCATCACTTCAGACCATCTCCCAGAATTCATCTTCAGCCATTCAATGCCAACTGCACTGCACCTCACGCATTTGTTACATTTACCGAATGGAACTCTTGTTCCATCAAATATCCCAAGCAAGATCATCAACGTAACCAATTCCAAAAGATCAGGCCTGTTTGTAAACAACGCCAAAATTGTAACTCCAGATGTGTGTGGAAGCTCCACAATTAGGTGTCATGGTATTAGCACAGCTATGAGATTTGAGAATTTCATGGTTACAACAAAGAAATGTAACAGATTTGATCCACCTACCGACCTACAGATGAACCCAACACAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

20.43

Weight (kDa)

8.51

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26730
malus_domestica MD09G1122000.v1.1
prunus_persica Prupe.3G201600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0156681
rosa_laevigata RLG00000020931
rosa_multiflora Rmu_sc0001130.1_g000004
rosa_roxburghii Rroxscaffold_2G00092840
rosa_samantha Rh2BG534200 Rh2DG543000
rosa_wichuraiana Rw2G042990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 506
AcsI RAATTY 3 cut(s) 175, 251, 475
AcuI CTGAAG 3 cut(s) 158, 219, 244
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 1 cut(s) 270
AloI GAACNNNNNNTCC 4 cut(s) 309, 310, 341, 342
AluBI AGCT 3 cut(s) 224, 429, 461
AluI AGCT 3 cut(s) 224, 429, 461
AlwI GGATC 1 cut(s) 506
AoxI GGCC 1 cut(s) 379
ApoI RAATTY 3 cut(s) 175, 251, 475
BbvCI CCTCAGC 1 cut(s) 170
BccI CCATC 3 cut(s) 236, 249, 337
BfmI CTRYAG 2 cut(s) 80, 527
BmsI GCATC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 90, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 90, 118
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 122
BsgI GTGCAG 2 cut(s) 264, 269
BshFI GGCC 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 438
BsnI GGCC 1 cut(s) 381
Bsp143I GATC 4 cut(s) 141, 348, 374, 511
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 84
BspPI GGATC 1 cut(s) 506
BssECI CCNNGG 2 cut(s) 90, 118
BssMI GATC 4 cut(s) 141, 348, 374, 511
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 48, 170
BstDSI CCRYGG 2 cut(s) 90, 118
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 4 cut(s) 144, 351, 377, 514
BstMBI GATC 4 cut(s) 141, 348, 374, 511
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSFI CTRYAG 2 cut(s) 80, 527
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 2 cut(s) 90, 118
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 54
CviAII CATG 5 cut(s) 91, 100, 196, 446, 481
CviJI RGCY 8 cut(s) 5, 52, 89, 224, 264, 381, 429, 461
CviKI_1 RGCY 8 cut(s) 5, 52, 89, 224, 264, 381, 429, 461
DdeI CTNAG 2 cut(s) 48, 170
DpnI GATC 4 cut(s) 143, 350, 376, 513
DpnII GATC 4 cut(s) 141, 348, 374, 511
Eco130I CCWWGG 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 381
Eco57I CTGAAG 3 cut(s) 158, 219, 244
EcoRI GAATTC 2 cut(s) 175, 251
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 5 cut(s) 94, 103, 199, 449, 484
FaiI YATR 8 cut(s) 92, 101, 146, 185, 197, 447, 464, 482
FatI CATG 5 cut(s) 90, 99, 195, 445, 480
FokI GGATG 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 1 cut(s) 381
Hin1II CATG 5 cut(s) 94, 103, 199, 449, 484
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 2 cut(s) 44, 164
Hpy166II GTNNAC 2 cut(s) 97, 391
Hpy188I TCNGA 3 cut(s) 181, 220, 238
Hpy188III TCNNGA 2 cut(s) 136, 413
Hpy8I GTNNAC 2 cut(s) 97, 391
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 5 cut(s) 35, 56, 82, 281, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 48, 170
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 5 cut(s) 94, 103, 199, 449, 484
Kzo9I GATC 4 cut(s) 141, 348, 374, 511
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 6 cut(s) 66, 149, 261, 363, 395, 426
LweI GCATC 1 cut(s) 165
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 5 cut(s) 300, 358, 406, 484, 500
MalI GATC 4 cut(s) 143, 350, 376, 513
MboI GATC 4 cut(s) 141, 348, 374, 511
MboII GAAGA 3 cut(s) 151, 184, 250
MluCI AATT 7 cut(s) 175, 212, 251, 364, 402, 435, 475
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 143, 165, 299
MslI CAYNNNNRTG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 292
NcoI CCATGG 1 cut(s) 90
NdeII GATC 4 cut(s) 141, 348, 374, 511
NlaIII CATG 5 cut(s) 94, 103, 199, 449, 484
PceI AGGCCT 1 cut(s) 381
PfeI GAWTC 1 cut(s) 44
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PstI CTGCAG 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 461
Sau3AI GATC 4 cut(s) 141, 348, 374, 511
SchI GAGTC 1 cut(s) 158
SetI ASST 8 cut(s) 226, 291, 360, 431, 443, 463, 520, 528
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 2 cut(s) 80, 527
SmiMI CAYNNNNRTG 1 cut(s) 461
Sse9I AATT 7 cut(s) 175, 212, 251, 364, 402, 435, 475
SseBI AGGCCT 1 cut(s) 381
StuI AGGCCT 1 cut(s) 381
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 360
TasI AATT 7 cut(s) 175, 212, 251, 364, 402, 435, 475
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 1 cut(s) 288
TspDTI ATGAA 4 cut(s) 184, 244, 469, 548
TspRI CASTG 1 cut(s) 288
XapI RAATTY 3 cut(s) 175, 251, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.